FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0108.ptfa, 273 aa
 vs ./tmplib.26680 library

1768744 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.5773+/-0.00422; mu= 13.6843+/- 0.283
 mean_var=81.3750+/-18.835, 0's: 0 Z-trim: 1  B-trim: 43 in 1/35
 Lambda= 0.1422

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0085  ( 263 res)   msk07136                   ( 263)  140   38 0.00073


>>mKIAA0085  ( 263 res)   msk07136                        (263 aa)
 initn: 226 init1: 110 opt: 140  Z-score: 161.8  bits: 37.6 E(): 0.00073
Smith-Waterman score: 202;  28.682% identity (31.356% ungapped) in 129 aa overlap (150-270:135-260)

     120       130       140       150       160       170         
mKIAA0 ACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKE
                                     .:..  .:.:: :: :.  ::   .:   .
mKIAA0 FLLCLLTLLGSYIELPAYLKLARPRPGPSKVPLMTLQLLDFCLSILTLCSSYMEVPTYLN
          110       120       130       140       150       160    

     180         190       200       210       220       230       
mKIAA0 Y--LDQLPDFPYKDDLLALDSSCLLFIVLVFFVVFIIFKAYLINCVWNCYKYINNRN-VP
       .  ....  .: .. .   .   ...:  : :.. .:.:.:...::..:::.... : . 
mKIAA0 FKSMNHMNYLPSQEGVPHSQFINMMLIFSVAFITVLILKVYMFKCVYTCYKFLKHMNSAM
          170       180       190       200       210       220    

        240       250       260            270   
mKIAA0 EIAVYPAFETPPQYVLPTYEMAVKIPEKEP-----PPPYLPA
       : .    :    . .::.:: :...: : :     ::::   
mKIAA0 EDSSSKMFL---KVALPSYEEALSLPPKTPEGDPAPPPYSEV
          230          240       250       260   




273 residues in 1 query   sequences
1768744 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:12:23 2006 done: Mon Mar 27 10:12:24 2006
 Scan time:  0.470 Display time:  0.000

Function used was FASTA [version 3.4t11 Apr 17, 2002]