hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/TIGRFAMs_HMM.LIB
Sequence file:            /cdna4/rodent/full/goal/mpk/mpk01802/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0108  ( 273 res)   mpk01802

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
mtp      mtp: Golgi 4-transmembrane spanning transpor   542.8   2.4e-159   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
mtp        1/1      50   273 .]     1   263 []   542.8 2.4e-159

Alignments of top-scoring domains:
mtp: domain 1 of 1, from 50 to 273: score 542.8, E = 2.4e-159
                   *->RsdrvrqTRCCGCfnvRvaTiaLaiyyvvvsvLlfIeltVEVahGkn
                      Rsdr+++TRCCGC++vR++Ti+L+++y+vv++L++I+ltVEV+h +n
   mKIAA0108    50    RSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTH-PN 95   

                   ScklvniqYlriadllSSefllinalvlisvSlLmgvvknREkyllpflS
                   S+++vniqY++i++++SSe++++na+vl++vS+Lm+++++  +++++++S
   mKIAA0108    96 SMPAVNIQYEVIGNYYSSERMADNACVLFAVSVLMFIISS--MLVYGAIS 143  

                   lQimDyLLCLLTLLGSYiELPAYLKLARsRassskiPlmtlqLlDFvLSi
                   +Q++                             ++iP+++++L+DFvLS+
   mKIAA0108   144 YQVG-----------------------------WLIPFFCYRLFDFVLSC 164  

                   LvliSSymevPTYlnfkslnhlnylPskedllhlqfiklllIvsvaFitv
                   Lv+iSS++++P  +++++l++l+++P+k+dll+l++++ll+Iv+v+F+++
   mKIAA0108   165 LVAISSLTYLP--RIKEYLDQLPDFPYKDDLLALDSSCLLFIVLVFFVVF 212  

                   lIfKvYlfkCVwnCYkyiknmNsPeiaekpaskmlpkvvLPsYEeAlslP
                   +IfK+Yl++CVwnCYkyi+n+N+Peia++pa++++p++vLP+YE+A+++P
   mKIAA0108   213 IIFKAYLINCVWNCYKYINNRNVPEIAVYPAFETPPQYVLPTYEMAVKIP 262  

                   eKtPEGdPAPPPYsev<-*
                   eK+P     PPPY+++   
   mKIAA0108   263 EKEP-----PPPYLPA    273  

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