Miyakogusa Predicted Gene

chr1.CM0178.110.nd
Related links:
Predicted Sequence Links:
Genome Sequence: CM0178
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7QPB4_VITVI 679 66.6 78.7 (tr|A7QPB4) Chromosome chr18 scaffold_137, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00002877001 PE=4 SV=1
TAIR_pep AT1G42440.1 638 63.0 77.0 | Symbols: | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G06720.1); similar to hypothetical protein OsJ_032357 [Oryza sativa (japonica cultivar-group)] (GB:EAZ18148.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66232.1); similar to hypothetical protein OsI_034649 [Oryza sativa (indica cultivar-group)] (GB:EAY80690.1); contains InterPro domain AARP2CN; (InterPro:IPR012948); contains InterPro domain Protein of unknown function DUF663 (InterPro:IPR007034) | chr1:15897968-15902379 REVERSE
Medicago IMGA|AC137825_61.4 71.6 21.9 50.0 AARP2CN chr04_pseudomolecule_IMGAG_V2 17961085-17970479 H EGN_Mt071002 20080227
Soybean Glyma06g02090.1 852 84.9 88.7  
Lotus Consensus KMC000077A_C02 60.0 92.9 92.9 KMC000077A_c02
3' Unigene BP062717 165 88.0 88.0 GENLf007e01
5' Unigene AV420082 65.9 91.8 91.8 MWM177c01_r
A list of protein families, domains and functional sites (searches in InterPro)
chr1.CM0178.110.nd length: 692 aa.
IPR007034 Protein of unknown function DUF663
method AccNumber shortName E-value location
HMMPfam PF04950 DUF663 2.6e-117 422-692
IPR012948 AARP2CN
HMMPfam PF08142 AARP2CN 6.9e-14 209-247
HMMSmart SM00785 no description 2.9e-05 160-247
no_ID  
HMMPanther PTHR12858 RIBOSOME 6.6e-133 421-692
HMMPanther PTHR12858:SF1 RIBOSOME 6.6e-133 421-692
Seg seg seg NA 119-132
175-190
333-358
Putative transmembrane regions
  From To
TM segments
SOSUI		 20 42
109 131
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr1.CM0178.110.nd 692 0.017 0.091 0.258 0.919 _ 2
Wolf-PSORT
chr1.CM0178.110.nd	cyto 7, plas 5, nucl 1, mito 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr1.CM0178.110.nd Not targeted -51.299 -0.231 -3.502 76.73% -47.566