Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000077A_C02 KMC000077A_c02
(608 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564480.1| expressed protein; protein id: At1g42440.1, sup... 34 1.7
ref|NP_798095.1| conserved hypothetical protein [Vibrio parahaem... 32 5.0
>ref|NP_564480.1| expressed protein; protein id: At1g42440.1, supported by cDNA:
gi_13605689 [Arabidopsis thaliana]
gi|13605690|gb|AAK32838.1|AF361826_1 At1g42440/F7F22_7
[Arabidopsis thaliana] gi|22137072|gb|AAM91381.1|
At1g42440/F7F22_7 [Arabidopsis thaliana]
gi|23397226|gb|AAN31895.1| unknown protein [Arabidopsis
thaliana]
Length = 793
Score = 33.9 bits (76), Expect = 1.7
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = -3
Query: 489 KVERLKVSHWRTQRSYLIA*KVSVV 415
K +RL V HWR+QRSY++A K ++
Sbjct: 237 KAQRLTVPHWRSQRSYIVARKAGML 261
>ref|NP_798095.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
2210633] gi|28806708|dbj|BAC59979.1| conserved
hypothetical protein [Vibrio parahaemolyticus]
Length = 388
Score = 32.3 bits (72), Expect = 5.0
Identities = 13/41 (31%), Positives = 28/41 (67%), Gaps = 1/41 (2%)
Frame = -2
Query: 166 FWFQILSVFPPK-SIILILRCKIKTLMSCIICNLFIFFLAL 47
+WF +L +P + S++++L ++ T+++CII FFL++
Sbjct: 249 YWFYVLLDWPMEGSLVVMLLAQLVTVVACIIMGALFFFLSM 289
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 463,200,469
Number of Sequences: 1393205
Number of extensions: 9230429
Number of successful extensions: 14887
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14885
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
