Miyakogusa Predicted Gene

chr1.CM0178.110.nd
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr1.CM0178.110.nd - phase: 2 /pseudo/partial
         (692 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC137825_61.4 AARP2CN chr04_pseudomolecule_IMGAG_V2 1796108...    72   1e-12

>IMGA|AC137825_61.4 AARP2CN chr04_pseudomolecule_IMGAG_V2
           17961085-17970479 H EGN_Mt071002 20080227
          Length = 1163

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 98/196 (50%), Gaps = 5/196 (2%)

Query: 494 VGSYARLHIKEVPSAVASKLCMLAKTSPVIACGLLKHESKISVLHFSVKKHETYDAPIKS 553
            G+Y RL + +VP  +           P++  G+   E  +  +   +K+H  +   +K+
Sbjct: 761 TGTYLRLEVHDVPCEMVEHF---DPYHPILVGGVGLGEENVGYMQARLKRHRWHKKVLKT 817

Query: 554 KEELIFHVGFRQFVGRPTFSSKFINTDKNKMERFLHAGHFSVASIYAPISFPPLPTIILK 613
           ++ +I  VG+R++   P ++ + +N  +++M ++       +A  + P++ P    + ++
Sbjct: 818 RDPIIVSVGWRRYQTTPVYAIEDLNG-RHRMLKYTPEHMHCLAMFWGPLAPPNTGIVAVQ 876

Query: 614 RDGEDAAP-RVAAVGSLKTVDSDRIILKRVILTGYPQRVSKRKASVKYMFYNPEDVKWFK 672
               + A  R+ A   +   +    I+K++ L GYP ++ K+ A +K MF +  +V  F+
Sbjct: 877 TLSNNQATFRITATAVVVEFNHAARIVKKIKLVGYPCKIFKKTALIKDMFTSDLEVARFE 936

Query: 673 PVELYTKRGLRGRIKE 688
              + T  G+RG++K+
Sbjct: 937 GAAIRTVSGIRGQVKK 952