Miyakogusa Predicted Gene

chr1.CM0178.110.nd

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr1.CM0178.110.nd - phase: 2 /pseudo/partial
         (692 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G42440.1 | Symbols:  | similar to unknown protein [Arabidopsi...   638   0.0  
AT1G06720.1 | Symbols:  | similar to unknown protein [Arabidopsi...    69   1e-11

>AT1G42440.1 | Symbols:  | similar to unknown protein [Arabidopsis
           thaliana] (TAIR:AT1G06720.1); similar to hypothetical
           protein OsJ_032357 [Oryza sativa (japonica
           cultivar-group)] (GB:EAZ18148.1); similar to unnamed
           protein product [Vitis vinifera] (GB:CAO66232.1);
           similar to hypothetical protein OsI_034649 [Oryza sativa
           (indica cultivar-group)] (GB:EAY80690.1); contains
           InterPro domain AARP2CN; (InterPro:IPR012948); contains
           InterPro domain Protein of unknown function DUF663
           (InterPro:IPR007034) | chr1:15897968-15902379 REVERSE
          Length = 793

 Score =  638 bits (1646), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/495 (63%), Positives = 381/495 (76%), Gaps = 2/495 (0%)

Query: 199 VVYDGHSEKSTLLLTGYLRARSLCVNQLVHVSGAGDFQLCKIEVLKDPIPLNSRKNQDLM 258
           +V D  S K TLLL+GYLRAR L VNQLVHVSG GDFQ  KIEVLKDP PLN RKNQ+ M
Sbjct: 261 LVDDESSGKCTLLLSGYLRARKLSVNQLVHVSGVGDFQFSKIEVLKDPFPLNERKNQNSM 320

Query: 259 DSDEMHDVEVTGSLFPDPQNQEALVVENIPDPLAGEQTWPTEAEITKADEDRNQKKIRKR 318
           + D+ HD EV  SL PDP  QE LV+EN PDPLAGEQTWPTE E+ +AD+++ Q +++K+
Sbjct: 321 ELDDSHDEEVLKSLVPDPMKQEPLVIENTPDPLAGEQTWPTEEEMAEADKNQKQGRLKKK 380

Query: 319 KLPQGTSEYQAAWIXXXXXXXXXXXXXXXXXXXXXXXXXXFPGQEGNKYSEFDGDGASLR 378
            LP+GTSEYQAAWI                             QEG    EF+ DG SL 
Sbjct: 381 TLPRGTSEYQAAWIVDETDEEDSDNGDSDDNGMVLDRGED-SNQEGMYDQEFEDDGKSLN 439

Query: 379 FGDSDEETDNDSVMMEVDILTREKIQDELKEIKEAHAADEEFPDEVDTPLDVPARKRFAK 438
             D D ET N+S M++ + LT E+I+DE+K+IKEA+A DEEFPDEV+TP+DVPAR+RFAK
Sbjct: 440 LRDIDTETQNESEMVDDEDLTEEQIKDEIKKIKEAYADDEEFPDEVETPIDVPARRRFAK 499

Query: 439 YRGLKSFRTSSWDPKESLPQDYAKIFEFDNFKRTQKHVLAKALEWEQENREDCIPVGSYA 498
           YRGLKSFRTSSWDP ESLPQDYA+IF FDN  RTQK VL +AL+ E+E+R+DC+P+GSY 
Sbjct: 500 YRGLKSFRTSSWDPNESLPQDYARIFAFDNVARTQKLVLKQALKMEEEDRDDCVPIGSYV 559

Query: 499 RLHIKEVPSAVASKLCMLAKTS-PVIACGLLKHESKISVLHFSVKKHETYDAPIKSKEEL 557
           RLHIKEVP   ASKL  L  T+ P+I  GLL+HESK+SVLHFSVKK++ Y+APIK+KEEL
Sbjct: 560 RLHIKEVPLGAASKLSSLVNTTKPIIGFGLLQHESKMSVLHFSVKKYDGYEAPIKTKEEL 619

Query: 558 IFHVGFRQFVGRPTFSSKFINTDKNKMERFLHAGHFSVASIYAPISFPPLPTIILKRDGE 617
           +FHVGFRQF+ RP F++   ++DK+KMERFLH G FS+ASIY PISFPPLP ++LK    
Sbjct: 620 MFHVGFRQFIARPVFATDNFSSDKHKMERFLHPGCFSLASIYGPISFPPLPLVVLKISEG 679

Query: 618 DAAPRVAAVGSLKTVDSDRIILKRVILTGYPQRVSKRKASVKYMFYNPEDVKWFKPVELY 677
              P +AA+GSLK+V+ ++IILK++ILTGYPQRVSK KASV+YMF+NPEDVKWFKPVE++
Sbjct: 680 SDPPAIAALGSLKSVEPNKIILKKIILTGYPQRVSKMKASVRYMFHNPEDVKWFKPVEVW 739

Query: 678 TKRGLRGRIKEPVGT 692
           +K G RGR+KEPVGT
Sbjct: 740 SKCGRRGRVKEPVGT 754


>AT1G06720.1 | Symbols:  | similar to unknown protein [Arabidopsis
           thaliana] (TAIR:AT1G42440.1); similar to hypothetical
           protein OsJ_010296 [Oryza sativa (japonica
           cultivar-group)] (GB:EAZ26813.1); similar to
           hypothetical protein OsI_011117 [Oryza sativa (indica
           cultivar-group)] (GB:EAY89884.1); similar to
           hypothetical protein CHLREDRAFT_113591 [Chlamydomonas
           reinhardtii] (GB:XP_001698464.1); contains InterPro
           domain AARP2CN; (InterPro:IPR012948); contains InterPro
           domain Protein of unknown function DUF663
           (InterPro:IPR007034) | chr1:2060614-2067280 REVERSE
          Length = 1147

 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 93/196 (47%), Gaps = 5/196 (2%)

Query: 494 VGSYARLHIKEVPSAVASKLCMLAKTSPVIACGLLKHESKISVLHFSVKKHETYDAPIKS 553
            G+Y RL I  VP  +           P++  G+   E  +  +   +KKH  +   +K+
Sbjct: 752 TGTYLRLEIHNVPYEMVE---FFDPCHPILVGGIGFGEDNVGYMQARLKKHRWHKKVLKT 808

Query: 554 KEELIFHVGFRQFVGRPTFSSKFINTDKNKMERFLHAGHFSVASIYAPISFPPLPTIILK 613
           ++ +I  +G+R++   P F+ +  N  +++M ++       +AS + P+  P    +  +
Sbjct: 809 RDPIIVSIGWRRYQTIPVFAIEDRNG-RHRMLKYTPEHMHCLASFWGPLVPPNTGFVAFQ 867

Query: 614 R-DGEDAAPRVAAVGSLKTVDSDRIILKRVILTGYPQRVSKRKASVKYMFYNPEDVKWFK 672
                 A  R+ A   +   +    I+K++ L G P ++ K+ A +K MF +  ++  F+
Sbjct: 868 NLSNNQAGFRITATSVVLEFNHQARIVKKIKLVGTPCKIKKKTAFIKDMFTSDLEIARFE 927

Query: 673 PVELYTKRGLRGRIKE 688
              + T  G+RG++K+
Sbjct: 928 GSSVRTVSGIRGQVKK 943