SCMH1 ORF clone pFN21AB6187

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Halotag ORF Clone pFN21AB6187

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Clone info.

Species

human

Clone Name

pFN21AB6187 Sequence (with vector) Restriction Map

Product ID

FHC09056

Flexi Clone PID

FXC09056

ORF Sequence

DNA sequence (1980 bp)
Protein sequence (660 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB528426]

Gene

KIBB6187

Symbol

SCMH1

Alias : Scml3

Description

sex comb on midleg homolog 1 (Drosophila), transcript variant 1

Original Clone ID

cs00787

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

Cell image

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 1980 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 660 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS30688.1 1.9e-160 100.0 SCMH1 CCDS53302.1 4.3e-144 100.0 SCMH1 CCDS53304.1 5.9e-127 96.5 SCMH1 CCDS461.1 3e-120 96.4 SCMH1 CCDS53301.1 4.3e-117 96.3 SCMH1 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR004092 62 132 PF02820 Mbt repeat IPR004092 171 236 PF02820 Mbt repeat IPR021987 356 469 PF12140 Protein of unknown function DUF3588 IPR021129 591 656 PF00536 Sterile alpha motif HMMSmart IPR004092 28 126 SM00561 Mbt repeat IPR004092 134 235 SM00561 Mbt repeat IPR001660 590 658 SM00454 Sterile alpha motif domain ProfileScan IPR004092 28 126 PS51079 Mbt repeat IPR004092 134 235 PS51079 Mbt repeat IPR001660 593 658 PS50105 Sterile alpha motif domain
Prediction of transmembrane (TM) segments Method No. N terminal transmembrane region C terminal type length SOSUI2 1 1 MLVCYSVLACEILWDLPCSIMGS 23 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) XP_011539335 660 616396 100.0 100.0 NP_001026864 660 616396 100.0 100.0 XP_011539334 670 616396 100.0 96.4 XP_006710525 670 616396 100.0 96.4 XP_011539337 613 616396 100.0 92.7 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AB6187 Download

>KIBB6187  1980 bp
ATGCTGGTTTGCTACAGTGTTTTAGCTTGTGAGATTCTCTGGGACCTTCCCTGCTCCATC
ATGGGGTCACCTCTAGGTCATTTTACCTGGGACAAATACCTAAAAGAAACATGTTCAGTC
CCAGCGCCTGTCCATTGCTTCAAGCAGTCCTACACACCTCCAAGCAACGAGTTCAAGATC
AGTATGAAATTGGAAGCACAGGACCCCAGGAACACCACATCCACCTGTATTGCCACAGTA
GTTGGACTGACAGGTGCCCGCCTTCGCCTGCGCCTTGATGGGAGCGACAACAAAAATGAC
TTCTGGCGGCTGGTTGACTCAGCTGAAATCCAGCCTATTGGGAACTGTGAAAAGAATGGG
GGTATGCTACAGCCACCTCTTGGATTTCGGCTGAATGCGTCTTCTTGGCCCATGTTCCTT
TTGAAGACGCTAAATGGAGCAGAGATGGCTCCCATCAGGATTTTCCACAAGGAGCCACCA
TCGCCTTCCCACAACTTCTTCAAAATGGGAATGAAGCTAGAAGCTGTGGACAGGAAGAAC
CCTCATTTCATTTGCCCAGCCACTATTGGGGAGGTTCGGGGCTCAGAGGTGCTTGTCACT
TTTGATGGGTGGCGAGGGGCCTTTGACTACTGGTGCCGCTTCGACTCCCGAGACATCTTC
CCTGTGGGCTGGTGTTCCTTGACTGGAGACAACCTGCAGCCTCCTGGCACCAAAGTTGTG
ATTCCAAAGAATCCCTATCCTGCCTCCGATGTGAATACTGAGAAGCCCAGCATCCACAGC
AGCACCAAAACTGTCTTGGAACATCAACCAGGGCAGAGGGGGCGTAAACCAGGAAAGAAG
CGGGGCCGGACACCCAAGACCCTAATTTCCCATCCCATCTCTGCCCCATCCAAGACAGCT
GAACCTTTGAAATTCCCAAAGAAGAGAGGTCCCAAACCTGGCAGCAAGAGGAAACCTCGG
ACTTTGCTGAACCCACCACCTGCCTCACCAACAACCAGCACTCCTGAACCGGATACCAGC
ACTGTACCCCAGGATGCTGCCACCATCCCCAGCTCAGCCATGCAGGCCCCAACAGTTTGT
ATCTACTTGAACAAGAATGGCAGCACAGGCCCCCACTTAGATAAGAAGAAGGTCCAGCAA
CTCCCTGACCATTTTGGACCAGCCCGTGCCTCTGTGGTGTTGCAGCAGGCTGTCCAGGCC
TGTATCGACTGTGCTTATCACCAGAAAACCGTCTTCAGCTTCCTCAAGCAAGGCCATGGT
GGTGAGGTTATCTCAGCCGTGTTTGACCGGGAACAGCATACCCTCAACCTCCCAGCAGTC
AACAGCATCACCTACGTCCTCCGCTTCCTGGAGAAACTCTGCCACAACCTTCGTAGTGAC
AATCTGTTTGGCAACCAGCCCTTTACACAGACTCACTTGTCACTCACTGCCATAGAGTAC
AGCCACAGCCACGACAGGTACCTACCAGGTGAAACCTTTGTCCTGGGGAATAGTCTGGCC
CGCTCCTTGGAACCACACTCAGACTCAATGGACTCTGCCTCAAATCCCACCAACCTTGTC
AGCACCTCCCAAAGGCACCGGCCCTTGCTTTCATCCTGTGGCCTCCCACCAAGCACTGCC
TCAGCTGTGCGCAGGCTATGCTCCAGGGGAGTGTTAAAAGGATCAAATGAAAGAAGGGAT
ATGGAATCATTTTGGAAACTAAATCGTTCCCCAGGGTCGGACCGATACCTGGAGAGCCGC
GATGCCTCTCGACTGAGTGGCCGGGACCCCTCCTCATGGACAGTCGAGGATGTGATGCAG
TTTGTCCGGGAAGCTGATCCTCAGCTTGGACCCCACGCTGACCTGTTTCGCAAACACGAG
ATCGATGGCAAGGCCCTGCTGCTGCTGCGCAGTGACATGATGATGAAGTACATGGGCCTG
AAGCTGGGGCCTGCACTCAAGCTCTCCTACCACATTGACCGGCTGAAGCAGGGCAAGTTC

ORF Protein

Cloned ORF protein sequence for pFN21AB6187 Download

>KIBB6187  660 aa
MLVCYSVLACEILWDLPCSIMGSPLGHFTWDKYLKETCSVPAPVHCFKQSYTPPSNEFKI
SMKLEAQDPRNTTSTCIATVVGLTGARLRLRLDGSDNKNDFWRLVDSAEIQPIGNCEKNG
GMLQPPLGFRLNASSWPMFLLKTLNGAEMAPIRIFHKEPPSPSHNFFKMGMKLEAVDRKN
PHFICPATIGEVRGSEVLVTFDGWRGAFDYWCRFDSRDIFPVGWCSLTGDNLQPPGTKVV
IPKNPYPASDVNTEKPSIHSSTKTVLEHQPGQRGRKPGKKRGRTPKTLISHPISAPSKTA
EPLKFPKKRGPKPGSKRKPRTLLNPPPASPTTSTPEPDTSTVPQDAATIPSSAMQAPTVC
IYLNKNGSTGPHLDKKKVQQLPDHFGPARASVVLQQAVQACIDCAYHQKTVFSFLKQGHG
GEVISAVFDREQHTLNLPAVNSITYVLRFLEKLCHNLRSDNLFGNQPFTQTHLSLTAIEY
SHSHDRYLPGETFVLGNSLARSLEPHSDSMDSASNPTNLVSTSQRHRPLLSSCGLPPSTA
SAVRRLCSRGVLKGSNERRDMESFWKLNRSPGSDRYLESRDASRLSGRDPSSWTVEDVMQ
FVREADPQLGPHADLFRKHEIDGKALLLLRSDMMMKYMGLKLGPALKLSYHIDRLKQGKF

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AB6187 Download

>pFN21AB6187  6685 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGCTGGTTTGCTACAGTGTTTTAGCTTGTGAGAT
TCTCTGGGACCTTCCCTGCTCCATCATGGGGTCACCTCTAGGTCATTTTACCTGGGACAA
ATACCTAAAAGAAACATGTTCAGTCCCAGCGCCTGTCCATTGCTTCAAGCAGTCCTACAC
ACCTCCAAGCAACGAGTTCAAGATCAGTATGAAATTGGAAGCACAGGACCCCAGGAACAC
CACATCCACCTGTATTGCCACAGTAGTTGGACTGACAGGTGCCCGCCTTCGCCTGCGCCT
TGATGGGAGCGACAACAAAAATGACTTCTGGCGGCTGGTTGACTCAGCTGAAATCCAGCC
TATTGGGAACTGTGAAAAGAATGGGGGTATGCTACAGCCACCTCTTGGATTTCGGCTGAA
TGCGTCTTCTTGGCCCATGTTCCTTTTGAAGACGCTAAATGGAGCAGAGATGGCTCCCAT
CAGGATTTTCCACAAGGAGCCACCATCGCCTTCCCACAACTTCTTCAAAATGGGAATGAA
GCTAGAAGCTGTGGACAGGAAGAACCCTCATTTCATTTGCCCAGCCACTATTGGGGAGGT
TCGGGGCTCAGAGGTGCTTGTCACTTTTGATGGGTGGCGAGGGGCCTTTGACTACTGGTG
CCGCTTCGACTCCCGAGACATCTTCCCTGTGGGCTGGTGTTCCTTGACTGGAGACAACCT
GCAGCCTCCTGGCACCAAAGTTGTGATTCCAAAGAATCCCTATCCTGCCTCCGATGTGAA
TACTGAGAAGCCCAGCATCCACAGCAGCACCAAAACTGTCTTGGAACATCAACCAGGGCA
GAGGGGGCGTAAACCAGGAAAGAAGCGGGGCCGGACACCCAAGACCCTAATTTCCCATCC
CATCTCTGCCCCATCCAAGACAGCTGAACCTTTGAAATTCCCAAAGAAGAGAGGTCCCAA
ACCTGGCAGCAAGAGGAAACCTCGGACTTTGCTGAACCCACCACCTGCCTCACCAACAAC
CAGCACTCCTGAACCGGATACCAGCACTGTACCCCAGGATGCTGCCACCATCCCCAGCTC
AGCCATGCAGGCCCCAACAGTTTGTATCTACTTGAACAAGAATGGCAGCACAGGCCCCCA
CTTAGATAAGAAGAAGGTCCAGCAACTCCCTGACCATTTTGGACCAGCCCGTGCCTCTGT
GGTGTTGCAGCAGGCTGTCCAGGCCTGTATCGACTGTGCTTATCACCAGAAAACCGTCTT
CAGCTTCCTCAAGCAAGGCCATGGTGGTGAGGTTATCTCAGCCGTGTTTGACCGGGAACA
GCATACCCTCAACCTCCCAGCAGTCAACAGCATCACCTACGTCCTCCGCTTCCTGGAGAA
ACTCTGCCACAACCTTCGTAGTGACAATCTGTTTGGCAACCAGCCCTTTACACAGACTCA
CTTGTCACTCACTGCCATAGAGTACAGCCACAGCCACGACAGGTACCTACCAGGTGAAAC
CTTTGTCCTGGGGAATAGTCTGGCCCGCTCCTTGGAACCACACTCAGACTCAATGGACTC
TGCCTCAAATCCCACCAACCTTGTCAGCACCTCCCAAAGGCACCGGCCCTTGCTTTCATC
CTGTGGCCTCCCACCAAGCACTGCCTCAGCTGTGCGCAGGCTATGCTCCAGGGGAGTGTT
AAAAGGATCAAATGAAAGAAGGGATATGGAATCATTTTGGAAACTAAATCGTTCCCCAGG
GTCGGACCGATACCTGGAGAGCCGCGATGCCTCTCGACTGAGTGGCCGGGACCCCTCCTC
ATGGACAGTCGAGGATGTGATGCAGTTTGTCCGGGAAGCTGATCCTCAGCTTGGACCCCA
CGCTGACCTGTTTCGCAAACACGAGATCGATGGCAAGGCCCTGCTGCTGCTGCGCAGTGA
CATGATGATGAAGTACATGGGCCTGAAGCTGGGGCCTGCACTCAAGCTCTCCTACCACAT
TGACCGGCTGAAGCAGGGCAAGTTCGTTTAAACGAATTCGGGCTCGGTACCCGGGGATCC
TCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAG
CTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCGGCCGCTT
CGAGCAGACATGATAAGATACATTGATGAGTTTGGACAAACCACAACTAGAATGCAGTGA
AAAAAATGCTTTATTTGTGAAATTTGTGATGCTATTGCTTTATTTGTAACCATTATAAGC
TGCAATAAACAAGTTAACAACAACAATTGCATTCATTTTATGTTTCAGGTTCAGGGGGAG
ATGTGGGAGGTTTTTTTAAGCAAGTAAAACCTCTACAAATGTGGTAAAATCGAATTCTAA
TGGATCCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATC
CGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTAATGGTTTCTTAGACGTCAGGT
GGCACTTTTCGGGGAAATGTGCGCGGAACCCCTATTTGTTTATTTTTCTAAATACATTCA
AATATGTATCCGCTCATGAGACAATAACCCTGATAAATGCTTCAATAATATTGAAAAAGG
AAGAGTATGAGTATTCAACATTTCCGTGTCGCCCTTATTCCCTTTTTTGCGGCATTTTGC
CTTCCTGTTTTTGCTCACCCAGAAACGCTGGTGAAAGTAAAAGATGCTGAAGATCAGTTG
GGTGCACGAGTGGGTTACATCGAACTGGATCTCAACAGCGGTAAGATCCTTGAGAGTTTT
CGCCCCGAAGAACGTTTTCCAATGATGAGCACTTTCAAAGTTCTGCTATGTGGCGCGGTA
TTATCCCGTATTGACGCCGGGCAAGAGCAACTCGGTCGCCGCATACACTATTCTCAGAAT
GACTTGGTTGAGTACTCACCAGTCACAGAAAAGCATCTTACGGATGGCATGACAGTAAGA
GAATTATGCAGTGCTGCCATAACCATGAGTGATAACACTGCGGCCAACTTACTTCTGACA
ACTATCGGAGGACCGAAGGAGCTAACCGCTTTTTTGCACAACATGGGGGATCATGTAACT
CGCCTTGATCGTTGGGAACCGGAGCTGAATGAAGCCATACCAAACGACGAGCGTGACACC
ACGATGCCTGTAGCAATGGCAACAACGTTGCGCAAACTATTAACTGGCGAACTACTTACT
CTAGCTTCCCGGCAACAATTAATAGACTGGATGGAGGCGGATAAAGTTGCAGGACCACTT
CTGCGCTCGGCCCTTCCGGCTGGCTGGTTTATTGCTGATAAATCTGGAGCCGGTGAGCGT
GGGTCTCGCGGTATCATTGCAGCACTGGGGCCAGATGGTAAGCCCTCCCGTATCGTAGTT
ATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATA
GGTGCCTCACTGATTAAGCATTGGTAATTCGAAATGACCGACCAAGCGACGCCCAACCGG
TATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAA
AGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGG
CGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGA
GGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCG
TGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGG
GAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTC
GCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCG
GTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCA
CTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGT
GGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAG
TTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCG
GTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATC
CTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTT
TGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATACAG
GAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAG
TGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTA
AAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTC
TGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAA
ATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATG
CGTCCGGCGTAGAGGATCGAGATCT