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SpecieshumanProduct IDFXC11383Cloning SiteSgfI-PmeIGeneKIBB6634SymbolHTR6
Alias : 5-HT6, 5-HT6RDescription5-hydroxytryptamine (serotonin) receptor 6, G protein-coupledOriginal Clone IDcs01234
Length: 1320 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 440 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS197.1 8.5e-119 100.0 HTR6 CCDS7410.1 6.2e-20 32.1 HTR7 CCDS7409.1 6.4e-20 32.3 HTR7 CCDS7408.1 6.7e-20 32.2 HTR7 CCDS6052.1 1.3e-19 31.8 ADRA1A
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition FPrintScan IPR002232 2 20 PR01102 5-Hydroxytryptamine 6 receptor IPR002232 20 37 PR01102 5-Hydroxytryptamine 6 receptor IPR000276 28 52 PR00237 GPCR IPR002232 50 64 PR01102 5-Hydroxytryptamine 6 receptor IPR000276 61 82 PR00237 GPCR IPR002232 81 99 PR01102 5-Hydroxytryptamine 6 receptor IPR000276 106 128 PR00237 GPCR IPR002232 125 138 PR01102 5-Hydroxytryptamine 6 receptor IPR000276 142 163 PR00237 GPCR IPR002232 161 179 PR01102 5-Hydroxytryptamine 6 receptor IPR002232 181 197 PR01102 5-Hydroxytryptamine 6 receptor IPR000276 189 212 PR00237 GPCR IPR002232 205 226 PR01102 5-Hydroxytryptamine 6 receptor IPR002232 227 248 PR01102 5-Hydroxytryptamine 6 receptor IPR002232 248 265 PR01102 5-Hydroxytryptamine 6 receptor IPR000276 266 290 PR00237 GPCR IPR002232 288 305 PR01102 5-Hydroxytryptamine 6 receptor IPR000276 302 328 PR00237 GPCR IPR002232 327 341 PR01102 5-Hydroxytryptamine 6 receptor IPR002232 389 411 PR01102 5-Hydroxytryptamine 6 receptor HMMPfam IPR000276 44 320 PF00001 GPCR ProfileScan IPR017452 43 320 PS50262 GPCR
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 29 VAAALCVVIALTAAANSLLIALI 51 PRIMARY 23 2 64 FLVSLFTSDLMVGLVVMPPAMLN 86 SECONDARY 23 3 102 WTAFDVMCCSASILNLCLISLDR 124 PRIMARY 23 4 142 RALALVLGAWSLAALASFLPLLL 164 PRIMARY 23 5 184 ASLPFVLVASGLTFFLPSGAICF 206 PRIMARY 23 6 211 ILLAARKQAVQVASLTTGMASQA 233 SECONDARY 23 7 275 GMFFVTWLPFFVANIVQAVCDCI 297 PRIMARY 23 8 303 DVLTWLGYCNSTMNPIIYPLFMR 325 SECONDARY 23
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_000862 440 601109 100.0 100.0 NP_062874 432 182137 32.1 81.6 NP_000863 445 182137 32.3 81.8 NP_062873 479 182137 32.2 84.3 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KB6634 Download>KIBB6634 1320 bp ATGGTCCCAGAGCCGGGCCCAACCGCCAATAGCACCCCGGCCTGGGGGGCAGGGCCGCCG TCGGCCCCGGGGGGCAGCGGCTGGGTGGCGGCCGCGCTGTGCGTGGTCATCGCGCTGACG GCGGCGGCCAACTCGCTGCTGATCGCGCTCATCTGCACTCAGCCCGCGCTGCGCAACACG TCCAACTTCTTCCTGGTGTCGCTCTTCACGTCTGACCTGATGGTGGGGCTGGTGGTGATG CCGCCGGCCATGCTGAACGCGCTGTACGGGCGCTGGGTGCTGGCGCGCGGCCTCTGCCTG CTCTGGACCGCCTTCGACGTGATGTGCTGCAGCGCCTCCATCCTCAACCTCTGCCTCATC AGCCTGGACCGCTACCTGCTCATCCTCTCGCCGCTGCGCTACAAGCTGCGCATGACGCCC CTGCGTGCCCTGGCCCTAGTCCTGGGCGCCTGGAGCCTCGCCGCTCTCGCCTCCTTCCTG CCCCTGCTGCTGGGCTGGCACGAGCTGGGCCACGCACGGCCACCCGTCCCTGGCCAGTGC CGCCTGCTGGCCAGCCTGCCTTTTGTCCTTGTGGCGTCGGGCCTCACCTTCTTCCTGCCC TCGGGTGCCATATGCTTCACCTACTGCAGGATCCTGCTAGCTGCCCGCAAGCAGGCCGTG CAGGTGGCCTCCCTCACCACCGGCATGGCCAGTCAGGCCTCGGAGACGCTGCAGGTGCCC AGGACCCCACGCCCAGGGGTGGAGTCTGCTGACAGCAGGCGTCTAGCCACGAAGCACAGC AGGAAGGCCCTGAAGGCCAGCCTGACGCTGGGCATCCTGCTGGGCATGTTCTTTGTGACC TGGTTGCCCTTCTTTGTGGCCAACATAGTCCAGGCCGTGTGCGACTGCATCTCCCCAGGC CTCTTCGATGTCCTCACATGGCTGGGTTACTGTAACAGCACCATGAACCCCATCATCTAC CCACTCTTCATGCGGGACTTCAAGCGGGCGCTGGGCAGGTTCCTGCCATGTCCACGCTGT CCCCGGGAGCGCCAGGCCAGCCTGGCCTCGCCATCACTGCGCACCTCTCACAGCGGCCCC CGGCCCGGCCTTAGCCTACAGCAGGTGCTGCCGCTGCCCCTGCCGCCGGACTCAGATTCG GACTCAGACGCAGGCTCAGGCGGCTCCTCGGGCCTGCGGCTCACGGCCCAGCTGCTGCTT CCTGGCGAGGCCACCCAGGACCCCCCGCTGCCCACCAGGGCCGCTGCCGCCGTCAATTTC TTCAACATCGACCCCGCGGAGCCCGAGCTGCGGCCGCATCCACTTGGCATCCCCACGAAC
Cloned ORF protein sequence for pF1KB6634 Download>KIBB6634 440 aa MVPEPGPTANSTPAWGAGPPSAPGGSGWVAAALCVVIALTAAANSLLIALICTQPALRNT SNFFLVSLFTSDLMVGLVVMPPAMLNALYGRWVLARGLCLLWTAFDVMCCSASILNLCLI SLDRYLLILSPLRYKLRMTPLRALALVLGAWSLAALASFLPLLLGWHELGHARPPVPGQC RLLASLPFVLVASGLTFFLPSGAICFTYCRILLAARKQAVQVASLTTGMASQASETLQVP RTPRPGVESADSRRLATKHSRKALKASLTLGILLGMFFVTWLPFFVANIVQAVCDCISPG LFDVLTWLGYCNSTMNPIIYPLFMRDFKRALGRFLPCPRCPRERQASLASPSLRTSHSGP RPGLSLQQVLPLPLPPDSDSDSDAGSGGSSGLRLTAQLLLPGEATQDPPLPTRAAAAVNF FNIDPAEPELRPHPLGIPTN
Nucleotide Sequence (with vector) for pF1KB6634 Download>pF1KB6634 4433 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGTCCCAGAG CCGGGCCCAACCGCCAATAGCACCCCGGCCTGGGGGGCAGGGCCGCCGTCGGCCCCGGGG GGCAGCGGCTGGGTGGCGGCCGCGCTGTGCGTGGTCATCGCGCTGACGGCGGCGGCCAAC TCGCTGCTGATCGCGCTCATCTGCACTCAGCCCGCGCTGCGCAACACGTCCAACTTCTTC CTGGTGTCGCTCTTCACGTCTGACCTGATGGTGGGGCTGGTGGTGATGCCGCCGGCCATG CTGAACGCGCTGTACGGGCGCTGGGTGCTGGCGCGCGGCCTCTGCCTGCTCTGGACCGCC TTCGACGTGATGTGCTGCAGCGCCTCCATCCTCAACCTCTGCCTCATCAGCCTGGACCGC TACCTGCTCATCCTCTCGCCGCTGCGCTACAAGCTGCGCATGACGCCCCTGCGTGCCCTG GCCCTAGTCCTGGGCGCCTGGAGCCTCGCCGCTCTCGCCTCCTTCCTGCCCCTGCTGCTG GGCTGGCACGAGCTGGGCCACGCACGGCCACCCGTCCCTGGCCAGTGCCGCCTGCTGGCC AGCCTGCCTTTTGTCCTTGTGGCGTCGGGCCTCACCTTCTTCCTGCCCTCGGGTGCCATA TGCTTCACCTACTGCAGGATCCTGCTAGCTGCCCGCAAGCAGGCCGTGCAGGTGGCCTCC CTCACCACCGGCATGGCCAGTCAGGCCTCGGAGACGCTGCAGGTGCCCAGGACCCCACGC CCAGGGGTGGAGTCTGCTGACAGCAGGCGTCTAGCCACGAAGCACAGCAGGAAGGCCCTG AAGGCCAGCCTGACGCTGGGCATCCTGCTGGGCATGTTCTTTGTGACCTGGTTGCCCTTC TTTGTGGCCAACATAGTCCAGGCCGTGTGCGACTGCATCTCCCCAGGCCTCTTCGATGTC CTCACATGGCTGGGTTACTGTAACAGCACCATGAACCCCATCATCTACCCACTCTTCATG CGGGACTTCAAGCGGGCGCTGGGCAGGTTCCTGCCATGTCCACGCTGTCCCCGGGAGCGC CAGGCCAGCCTGGCCTCGCCATCACTGCGCACCTCTCACAGCGGCCCCCGGCCCGGCCTT AGCCTACAGCAGGTGCTGCCGCTGCCCCTGCCGCCGGACTCAGATTCGGACTCAGACGCA GGCTCAGGCGGCTCCTCGGGCCTGCGGCTCACGGCCCAGCTGCTGCTTCCTGGCGAGGCC ACCCAGGACCCCCCGCTGCCCACCAGGGCCGCTGCCGCCGTCAATTTCTTCAACATCGAC CCCGCGGAGCCCGAGCTGCGGCCGCATCCACTTGGCATCCCCACGAACGTTTAAACGAAT TCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGC TGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGC ATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTAT ATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACT GCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCT GACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCT TTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCT GGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCG CCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAGACAGGATGACGGTCGTTT CGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTA TTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTG TCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAA CTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCT GTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGG CAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCA ATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCATTCGACCACCAAGCGAAACAT CGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGAC GAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCG GATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTGCCGAATATCATGGTGGAA AATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAG GACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGC TTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTT CTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAATGACCGACCAAGCGACGCCCA ACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGC AGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTT GCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAG TCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTC CCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCC TTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGT CGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTT ATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGC AGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAA GTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAA GCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGG TAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGA AGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGG GATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAA TACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGC TTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATAC GGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTAC CTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTAT GGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCA CGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGATACAGATTAAATCAGAACG CAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGA CCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCA TGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGG CCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGG GAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCAT AAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTC TACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCAT
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