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SpecieshumanProduct IDFXC10097Cloning SiteSgfI-PmeIGeneKIBB6254SymbolLRCH4
Alias : LRN, LRRN1, LRRN4, PP14183Descriptionleucine-rich repeats and calponin homology (CH) domain containing 4, transcript variant 1Original Clone IDcs00854
Length: 2049 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 683 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS34706.1 5.8e-144 100.0 LRCH4 CCDS3330.1 3.4e-36 42.5 LRCH3 CCDS59175.1 1.5e-28 41.3 LRCH2 CCDS48155.1 1.5e-28 40.3 LRCH2 CCDS53866.1 2.5e-28 43.2 LRCH1
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition HMMPfam IPR001611 116 135 PF00560 Leucine-rich repeat IPR001611 160 181 PF00560 Leucine-rich repeat IPR001611 183 204 PF00560 Leucine-rich repeat IPR001611 206 226 PF00560 Leucine-rich repeat IPR001715 537 630 PF00307 Calponin homology domain HMMSmart IPR003591 90 112 SM00369 Leucine-rich repeat IPR003591 113 136 SM00369 Leucine-rich repeat NULL 113 132 SM00364 NULL NULL 135 154 SM00364 NULL IPR003591 158 180 SM00369 Leucine-rich repeat NULL 158 177 SM00364 NULL IPR003591 181 204 SM00369 Leucine-rich repeat NULL 181 200 SM00364 NULL IPR003591 226 249 SM00369 Leucine-rich repeat IPR001715 540 645 SM00033 Calponin homology domain ProfileScan IPR001611 92 114 PS51450 Leucine-rich repeat IPR001611 115 136 PS51450 Leucine-rich repeat IPR001611 137 158 PS51450 Leucine-rich repeat IPR001611 160 182 PS51450 Leucine-rich repeat IPR001611 183 205 PS51450 Leucine-rich repeat IPR001611 206 226 PS51450 Leucine-rich repeat IPR001611 228 249 PS51450 Leucine-rich repeat IPR001715 534 630 PS50021 Calponin homology domain
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 659 LGGFVVFYVVLMLLLYVTYTRLL 681 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_001157685 696 610368 43.4 92.1 NP_055931 728 610368 43.1 98.2 NP_001157683 763 610368 43.0 94.6 XP_016875972 731 610368 42.3 92.1 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KB6254 Download>KIBB6254 2049 bp ATGGCGGCGGCCGTAGCGGCTCCACTCGCCGCCGGGGGTGAGGAGGCGGCAGCCACGACC TCCGTGCCCGGGTCTCCAGGTCTGCCGGGGAGACGCAGTGCAGAGCGGGCCCTAGAGGAG GCCGTGGCCACCGGGACCCTGAACCTGTCTAACCGGCGCTTGAAGCACTTCCCCCGGGGC GCGGCCCGTAGCTACGACCTGTCAGACATCACCCAGGCTGACCTGTCCCGGAACCGGTTT CCCGAGGTGCCCGAGGCGGCGTGCCAGCTGGTGTCCCTGGAGGGCCTGAGCCTCTACCAC AATTGCCTGAGATGCCTGAACCCAGCCTTGGGGAATCTCACAGCCCTCACCTACCTCAAC CTCAGCCGAAACCAGCTGTCGCTGCTGCCACCCTACATCTGCCAGCTGCCCCTGAGGGTC CTCATCGTCAGCAACAACAAGCTGGGAGCCCTGCCCCCTGACATCGGCACCCTGGGAAGC CTGCGACAGCTTGACGTGAGCAGCAACGAGCTCCAATCCCTGCCCTCGGAACTGTGTGGC CTCTCTTCCCTGCGGGACCTCAATGTCCGGAGGAACCAGCTCAGTACGCTGCCCGAAGAG CTGGGGGACCTCCCTCTGGTCCGCCTGGATTTCTCCTGTAACCGCGTCTCCCGAATCCCA GTCTCCTTCTGCCGCCTGAGGCACCTGCAGGTCATTCTGCTGGACAGCAACCCTCTGCAG AGTCCACCTGCCCAGGTCTGCCTGAAGGGGAAACTTCACATCTTCAAGTATTTGTCCACA GAGGCCGGGCAGCGTGGGTCGGCCCTGGGGGACCTGGCCCCTTCTCGGCCCCCGAGTTTC AGTCCCTGCCCTGCAGAGGATCTATTTCCGGGACATCGGTACGATGGTGGGCTGGACTCA GGCTTCCACAGCGTTGATAGTGGCAGCAAGAGGTGGTCTGGAAATGAGTCAACAGATGAA TTTTCAGAGCTGTCATTCCGGATCTCAGAGCTGGCCCGGGAGCCCCGGGGGCCCAGAGAA CGCAAGGAGGATGGCTCAGCGGACGGAGACCCTGTGCAGATTGACTTCATCGACAGCCAT GTCCCCGGGGAGGATGAAGAGCGAGGCACTGTGGAGGAGCAGCGACCACCCGAATTAAGC CCTGGGGCAGGGGACAGGGAGAGGGCACCAAGCAGCAGGCGGGAGGAGCCGGCAGGGGAG GAGCGGCGGCGCCCGGACACCTTGCAGCTGTGGCAGGAGCGGGAACGGCGGCAGCAGCAG CAGAGCGGGGCGTGGGGGGCCCCGAGGAAGGATAGCCTCTTGAAGCCAGGGCTCAGGGCT GTTGTGGGAGGGGCCGCCGCCGTGTCCACTCAAGCCATGCACAACGGCTCGCCTAAGTCC AGTGCCTCCCAAGCAGGGGCTGCAGCGGGGCAGGGAGCCCCCGCCCCTGCCCCTGCCTCC CAAGAGCCCCTTCCCATAGCTGGACCAGCGACAGCACCTGCTCCACGGCCACTTGGCTCC ATTCAGAGACCAAACAGCTTCCTCTTCCGTTCCTCCTCTCAGAGTGGCTCAGGCCCTTCC TCACCAGACTCTGTCCTGAGACCTCGGCGGTACCCCCAGGTTCCAGATGAGAAGGACTTA ATGACTCAGCTGCGCCAGGTCCTTGAGTCCCGGCTGCAGCGGCCCCTGCCTGAGGACCTG GCCGAGGCTCTGGCCAGTGGGGTCATCCTGTGCCAGCTGGCCAACCAGCTACGGCCGCGC TCCGTGCCCTTCATCCATGTGCCCTCCCCTGCTGTGCCAAAACTCAGTGCCCTCAAGGCT CGGAAGAATGTGGAGAGTTTTCTAGAAGCCTGTCGAAAAATGGGGGTGCCTGAGGCTGAC CTGTGCTCGCCCTCGGATCTCCTCCAGGGCACTGCCCGGGGGCTGCGGACCGCGCTGGAG GCCGTGAAGCGGGTGGGGGGCAAGGCCCTACCGCCCCTCTGGCCCCCCTCTGGTCTGGGC GGCTTCGTCGTCTTCTACGTGGTCCTCATGCTGCTGCTCTATGTCACCTACACTCGGCTC CTGGGTTCC
Cloned ORF protein sequence for pF1KB6254 Download>KIBB6254 683 aa MAAAVAAPLAAGGEEAAATTSVPGSPGLPGRRSAERALEEAVATGTLNLSNRRLKHFPRG AARSYDLSDITQADLSRNRFPEVPEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLN LSRNQLSLLPPYICQLPLRVLIVSNNKLGALPPDIGTLGSLRQLDVSSNELQSLPSELCG LSSLRDLNVRRNQLSTLPEELGDLPLVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQ SPPAQVCLKGKLHIFKYLSTEAGQRGSALGDLAPSRPPSFSPCPAEDLFPGHRYDGGLDS GFHSVDSGSKRWSGNESTDEFSELSFRISELAREPRGPRERKEDGSADGDPVQIDFIDSH VPGEDEERGTVEEQRPPELSPGAGDRERAPSSRREEPAGEERRRPDTLQLWQERERRQQQ QSGAWGAPRKDSLLKPGLRAVVGGAAAVSTQAMHNGSPKSSASQAGAAAGQGAPAPAPAS QEPLPIAGPATAPAPRPLGSIQRPNSFLFRSSSQSGSGPSSPDSVLRPRRYPQVPDEKDL MTQLRQVLESRLQRPLPEDLAEALASGVILCQLANQLRPRSVPFIHVPSPAVPKLSALKA RKNVESFLEACRKMGVPEADLCSPSDLLQGTARGLRTALEAVKRVGGKALPPLWPPSGLG GFVVFYVVLMLLLYVTYTRLLGS
Nucleotide Sequence (with vector) for pF1KB6254 Download>pF1KB6254 5162 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGCGGCGGCC GTAGCGGCTCCACTCGCCGCCGGGGGTGAGGAGGCGGCAGCCACGACCTCCGTGCCCGGG TCTCCAGGTCTGCCGGGGAGACGCAGTGCAGAGCGGGCCCTAGAGGAGGCCGTGGCCACC GGGACCCTGAACCTGTCTAACCGGCGCTTGAAGCACTTCCCCCGGGGCGCGGCCCGTAGC TACGACCTGTCAGACATCACCCAGGCTGACCTGTCCCGGAACCGGTTTCCCGAGGTGCCC GAGGCGGCGTGCCAGCTGGTGTCCCTGGAGGGCCTGAGCCTCTACCACAATTGCCTGAGA TGCCTGAACCCAGCCTTGGGGAATCTCACAGCCCTCACCTACCTCAACCTCAGCCGAAAC CAGCTGTCGCTGCTGCCACCCTACATCTGCCAGCTGCCCCTGAGGGTCCTCATCGTCAGC AACAACAAGCTGGGAGCCCTGCCCCCTGACATCGGCACCCTGGGAAGCCTGCGACAGCTT GACGTGAGCAGCAACGAGCTCCAATCCCTGCCCTCGGAACTGTGTGGCCTCTCTTCCCTG CGGGACCTCAATGTCCGGAGGAACCAGCTCAGTACGCTGCCCGAAGAGCTGGGGGACCTC CCTCTGGTCCGCCTGGATTTCTCCTGTAACCGCGTCTCCCGAATCCCAGTCTCCTTCTGC CGCCTGAGGCACCTGCAGGTCATTCTGCTGGACAGCAACCCTCTGCAGAGTCCACCTGCC CAGGTCTGCCTGAAGGGGAAACTTCACATCTTCAAGTATTTGTCCACAGAGGCCGGGCAG CGTGGGTCGGCCCTGGGGGACCTGGCCCCTTCTCGGCCCCCGAGTTTCAGTCCCTGCCCT GCAGAGGATCTATTTCCGGGACATCGGTACGATGGTGGGCTGGACTCAGGCTTCCACAGC GTTGATAGTGGCAGCAAGAGGTGGTCTGGAAATGAGTCAACAGATGAATTTTCAGAGCTG TCATTCCGGATCTCAGAGCTGGCCCGGGAGCCCCGGGGGCCCAGAGAACGCAAGGAGGAT GGCTCAGCGGACGGAGACCCTGTGCAGATTGACTTCATCGACAGCCATGTCCCCGGGGAG GATGAAGAGCGAGGCACTGTGGAGGAGCAGCGACCACCCGAATTAAGCCCTGGGGCAGGG GACAGGGAGAGGGCACCAAGCAGCAGGCGGGAGGAGCCGGCAGGGGAGGAGCGGCGGCGC CCGGACACCTTGCAGCTGTGGCAGGAGCGGGAACGGCGGCAGCAGCAGCAGAGCGGGGCG TGGGGGGCCCCGAGGAAGGATAGCCTCTTGAAGCCAGGGCTCAGGGCTGTTGTGGGAGGG GCCGCCGCCGTGTCCACTCAAGCCATGCACAACGGCTCGCCTAAGTCCAGTGCCTCCCAA GCAGGGGCTGCAGCGGGGCAGGGAGCCCCCGCCCCTGCCCCTGCCTCCCAAGAGCCCCTT CCCATAGCTGGACCAGCGACAGCACCTGCTCCACGGCCACTTGGCTCCATTCAGAGACCA AACAGCTTCCTCTTCCGTTCCTCCTCTCAGAGTGGCTCAGGCCCTTCCTCACCAGACTCT GTCCTGAGACCTCGGCGGTACCCCCAGGTTCCAGATGAGAAGGACTTAATGACTCAGCTG CGCCAGGTCCTTGAGTCCCGGCTGCAGCGGCCCCTGCCTGAGGACCTGGCCGAGGCTCTG GCCAGTGGGGTCATCCTGTGCCAGCTGGCCAACCAGCTACGGCCGCGCTCCGTGCCCTTC ATCCATGTGCCCTCCCCTGCTGTGCCAAAACTCAGTGCCCTCAAGGCTCGGAAGAATGTG GAGAGTTTTCTAGAAGCCTGTCGAAAAATGGGGGTGCCTGAGGCTGACCTGTGCTCGCCC TCGGATCTCCTCCAGGGCACTGCCCGGGGGCTGCGGACCGCGCTGGAGGCCGTGAAGCGG GTGGGGGGCAAGGCCCTACCGCCCCTCTGGCCCCCCTCTGGTCTGGGCGGCTTCGTCGTC TTCTACGTGGTCCTCATGCTGCTGCTCTATGTCACCTACACTCGGCTCCTGGGTTCCGTT TAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGC TGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCA ATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAAAGG AGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTATCGCCATGT AAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGC CCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTGTT CCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAAGAA TTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGGATGGCT TTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAGACAGGATGA CGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCCGCTTGGGTG GAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGATGCCGCCGTG TTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTGTCCGGTGCC CTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACGGGCGTTCCT TGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTATTGGGCGAA GTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTATCCATCATG GCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCATTCGACCACCAA GCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTCGATCAGGAT GATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAGGCG CGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTGCCGAATATC ATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGTGTGGCGGAC CGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGCGGCGAATGG GCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGCATCGCCTTC TATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAATGACCGACCAAG CGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGG GGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAA GGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCG ACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCC TGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGC CTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTC GGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCG CTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCC ACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGA GTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGC TCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAAC CACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGG ATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTC ACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTATA GTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAA AATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGG TATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGC CATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTA AGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTA CTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGATACAGATTAA ATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGT CCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGG GTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGA AAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAA ATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGAC GCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTT TTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTC AT
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