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SpecieshumanProduct IDFXC11940Cloning SiteSgfI-PmeIGeneKIBB5045SymbolLRRC4
Alias : NAG14, NGL-2Descriptionleucine rich repeat containing 4Original Clone IDcs03075
Length: 1959 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 653 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS5799.1 8.9e-177 100.0 LRRC4 CCDS31464.1 1e-90 55.3 LRRC4C CCDS42595.1 1.6e-78 58.4 LRRC4B CCDS73766.1 8.2e-16 27.6 LINGO1 CCDS45313.1 8.2e-16 27.6 LINGO1
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition HMMPfam IPR001611 148 167 PF00560 Leucine-rich repeat IPR001611 267 287 PF00560 Leucine-rich repeat IPR013098 355 441 PF07679 Immunoglobulin I-set HMMSmart IPR000372 45 79 SM00013 Leucine-rich repeat-containing N-terminal IPR003591 73 97 SM00369 Leucine-rich repeat IPR003591 98 121 SM00369 Leucine-rich repeat IPR003591 122 145 SM00369 Leucine-rich repeat IPR003591 146 169 SM00369 Leucine-rich repeat IPR003591 217 240 SM00369 Leucine-rich repeat IPR003591 241 264 SM00369 Leucine-rich repeat IPR003591 265 288 SM00369 Leucine-rich repeat IPR000483 300 351 SM00082 Cysteine-rich flanking region IPR003599 359 442 SM00409 Immunoglobulin subtype IPR003598 365 431 SM00408 Immunoglobulin subtype 2 ProfileScan IPR001611 76 97 PS51450 Leucine-rich repeat IPR001611 100 121 PS51450 Leucine-rich repeat IPR001611 124 145 PS51450 Leucine-rich repeat IPR001611 148 169 PS51450 Leucine-rich repeat IPR001611 197 218 PS51450 Leucine-rich repeat IPR001611 219 240 PS51450 Leucine-rich repeat IPR001611 267 288 PS51450 Leucine-rich repeat IPR007110 353 442 PS50835 Immunoglobulin-like
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 17 ILLPFVYLTAQVWILCAAIAAAA 39 PRIMARY 23 2 526 TKIIIGCFVAVTLLAAAMLIVFY 548 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) XP_011514763 653 610486 100.0 100.0 NP_071426 653 610486 100.0 100.0 XP_016867994 653 610486 100.0 100.0 XP_011518540 640 608817 55.3 99.2 XP_016873561 640 608817 55.3 99.2 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KB5045 Download>KIBB5045 1959 bp ATGAAGCTCTTGTGGCAGGTAACTGTGCACCACCACACCTGGAATGCCATCCTGCTCCCG TTCGTCTACCTCACGGCGCAAGTGTGGATTCTGTGTGCAGCCATCGCTGCTGCCGCCTCA GCCGGGCCCCAGAACTGCCCCTCCGTCTGCTCGTGCAGTAACCAGTTCAGCAAGGTGGTG TGCACGCGCCGGGGCCTCTCCGAGGTCCCGCAGGGTATTCCCTCGAACACCCGGTACCTC AACCTCATGGAGAACAACATCCAGATGATCCAGGCCGACACCTTCCGCCACCTCCACCAC CTGGAGGTCCTGCAGTTGGGCAGGAACTCCATCCGGCAGATTGAGGTGGGGGCCTTCAAC GGCCTGGCCAGCCTCAACACCCTGGAGCTGTTCGACAACTGGCTGACAGTCATCCCTAGC GGGGCCTTTGAATACCTGTCCAAGCTGCGGGAGCTCTGGCTTCGCAACAACCCCATCGAA AGCATCCCCTCTTACGCCTTCAACCGGGTGCCCTCCCTCATGCGCCTGGACTTGGGGGAG CTCAAGAAGCTGGAGTATATCTCTGAGGGAGCTTTTGAGGGGCTGTTCAACCTCAAGTAT CTGAACTTGGGCATGTGCAACATTAAAGACATGCCCAATCTCACCCCCCTGGTGGGGCTG GAGGAGCTGGAGATGTCAGGGAACCACTTCCCTGAGATCAGGCCTGGCTCCTTCCATGGC CTGAGCTCCCTCAAGAAGCTCTGGGTCATGAACTCACAGGTCAGCCTGATTGAGCGGAAT GCTTTTGACGGGCTGGCTTCACTTGTGGAACTCAACTTGGCCCACAATAACCTCTCTTCT TTGCCCCATGACCTCTTTACCCCGCTGAGGTACCTGGTGGAGTTGCATCTACACCACAAC CCTTGGAACTGTGATTGTGACATTCTGTGGCTAGCCTGGTGGCTTCGAGAGTATATACCC ACCAATTCCACCTGCTGTGGCCGCTGTCATGCTCCCATGCACATGCGAGGCCGCTACCTC GTGGAGGTGGACCAGGCCTCCTTCCAGTGCTCTGCCCCCTTCATCATGGACGCACCTCGA GACCTCAACATTTCTGAGGGTCGGATGGCAGAACTTAAGTGTCGGACTCCCCCTATGTCC TCCGTGAAGTGGTTGCTGCCCAATGGGACAGTGCTCAGCCACGCCTCCCGCCACCCAAGG ATCTCTGTCCTCAACGACGGCACCTTGAACTTTTCCCACGTGCTGCTTTCAGACACTGGG GTGTACACATGCATGGTGACCAATGTTGCAGGCAACTCCAACGCCTCGGCCTACCTCAAT GTGAGCACGGCTGAGCTTAACACCTCCAACTACAGCTTCTTCACCACAGTAACAGTGGAG ACCACGGAGATCTCGCCTGAGGACACAACGCGAAAGTACAAGCCTGTTCCTACCACGTCC ACTGGTTACCAGCCGGCATATACCACCTCTACCACGGTGCTCATTCAGACTACCCGTGTG CCCAAGCAGGTGGCAGTACCCGCGACAGACACCACTGACAAGATGCAGACCAGCCTGGAT GAAGTCATGAAGACCACCAAGATCATCATTGGCTGCTTTGTGGCAGTGACTCTGCTAGCT GCCGCCATGTTGATTGTCTTCTATAAACTTCGTAAGCGGCACCAGCAGCGGAGTACAGTC ACAGCCGCCCGGACTGTTGAGATAATCCAGGTGGACGAAGACATCCCAGCAGCAACATCC GCAGCAGCAACAGCAGCTCCGTCCGGTGTATCAGGTGAGGGGGCAGTAGTGCTGCCCACA ATTCATGACCATATTAACTACAACACCTACAAACCAGCACATGGGGCCCACTGGACAGAA AACAGCCTGGGGAACTCTCTGCACCCCACAGTCACCACTATCTCTGAACCTTATATAATT CAGACCCATACCAAGGACAAGGTACAGGAAACTCAAATA
Cloned ORF protein sequence for pF1KB5045 Download>KIBB5045 653 aa MKLLWQVTVHHHTWNAILLPFVYLTAQVWILCAAIAAAASAGPQNCPSVCSCSNQFSKVV CTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE LKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHG LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN PWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQCSAPFIMDAPR DLNISEGRMAELKCRTPPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTG VYTCMVTNVAGNSNASAYLNVSTAELNTSNYSFFTTVTVETTEISPEDTTRKYKPVPTTS TGYQPAYTTSTTVLIQTTRVPKQVAVPATDTTDKMQTSLDEVMKTTKIIIGCFVAVTLLA AAMLIVFYKLRKRHQQRSTVTAARTVEIIQVDEDIPAATSAAATAAPSGVSGEGAVVLPT IHDHINYNTYKPAHGAHWTENSLGNSLHPTVTTISEPYIIQTHTKDKVQETQI
Nucleotide Sequence (with vector) for pF1KB5045 Download>pF1KB5045 5072 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGAAGCTCTTG TGGCAGGTAACTGTGCACCACCACACCTGGAATGCCATCCTGCTCCCGTTCGTCTACCTC ACGGCGCAAGTGTGGATTCTGTGTGCAGCCATCGCTGCTGCCGCCTCAGCCGGGCCCCAG AACTGCCCCTCCGTCTGCTCGTGCAGTAACCAGTTCAGCAAGGTGGTGTGCACGCGCCGG GGCCTCTCCGAGGTCCCGCAGGGTATTCCCTCGAACACCCGGTACCTCAACCTCATGGAG AACAACATCCAGATGATCCAGGCCGACACCTTCCGCCACCTCCACCACCTGGAGGTCCTG CAGTTGGGCAGGAACTCCATCCGGCAGATTGAGGTGGGGGCCTTCAACGGCCTGGCCAGC CTCAACACCCTGGAGCTGTTCGACAACTGGCTGACAGTCATCCCTAGCGGGGCCTTTGAA TACCTGTCCAAGCTGCGGGAGCTCTGGCTTCGCAACAACCCCATCGAAAGCATCCCCTCT TACGCCTTCAACCGGGTGCCCTCCCTCATGCGCCTGGACTTGGGGGAGCTCAAGAAGCTG GAGTATATCTCTGAGGGAGCTTTTGAGGGGCTGTTCAACCTCAAGTATCTGAACTTGGGC ATGTGCAACATTAAAGACATGCCCAATCTCACCCCCCTGGTGGGGCTGGAGGAGCTGGAG ATGTCAGGGAACCACTTCCCTGAGATCAGGCCTGGCTCCTTCCATGGCCTGAGCTCCCTC AAGAAGCTCTGGGTCATGAACTCACAGGTCAGCCTGATTGAGCGGAATGCTTTTGACGGG CTGGCTTCACTTGTGGAACTCAACTTGGCCCACAATAACCTCTCTTCTTTGCCCCATGAC CTCTTTACCCCGCTGAGGTACCTGGTGGAGTTGCATCTACACCACAACCCTTGGAACTGT GATTGTGACATTCTGTGGCTAGCCTGGTGGCTTCGAGAGTATATACCCACCAATTCCACC TGCTGTGGCCGCTGTCATGCTCCCATGCACATGCGAGGCCGCTACCTCGTGGAGGTGGAC CAGGCCTCCTTCCAGTGCTCTGCCCCCTTCATCATGGACGCACCTCGAGACCTCAACATT TCTGAGGGTCGGATGGCAGAACTTAAGTGTCGGACTCCCCCTATGTCCTCCGTGAAGTGG TTGCTGCCCAATGGGACAGTGCTCAGCCACGCCTCCCGCCACCCAAGGATCTCTGTCCTC AACGACGGCACCTTGAACTTTTCCCACGTGCTGCTTTCAGACACTGGGGTGTACACATGC ATGGTGACCAATGTTGCAGGCAACTCCAACGCCTCGGCCTACCTCAATGTGAGCACGGCT GAGCTTAACACCTCCAACTACAGCTTCTTCACCACAGTAACAGTGGAGACCACGGAGATC TCGCCTGAGGACACAACGCGAAAGTACAAGCCTGTTCCTACCACGTCCACTGGTTACCAG CCGGCATATACCACCTCTACCACGGTGCTCATTCAGACTACCCGTGTGCCCAAGCAGGTG GCAGTACCCGCGACAGACACCACTGACAAGATGCAGACCAGCCTGGATGAAGTCATGAAG ACCACCAAGATCATCATTGGCTGCTTTGTGGCAGTGACTCTGCTAGCTGCCGCCATGTTG ATTGTCTTCTATAAACTTCGTAAGCGGCACCAGCAGCGGAGTACAGTCACAGCCGCCCGG ACTGTTGAGATAATCCAGGTGGACGAAGACATCCCAGCAGCAACATCCGCAGCAGCAACA GCAGCTCCGTCCGGTGTATCAGGTGAGGGGGCAGTAGTGCTGCCCACAATTCATGACCAT ATTAACTACAACACCTACAAACCAGCACATGGGGCCCACTGGACAGAAAACAGCCTGGGG AACTCTCTGCACCCCACAGTCACCACTATCTCTGAACCTTATATAATTCAGACCCATACC AAGGACAAGGTACAGGAAACTCAAATAGTTTAAACGAATTCGAGCTCGGTACCCGGGGAT CCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGA AGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAA ACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCA TAAAACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTT TGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCA CCGTTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGA GTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTT GGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGG GGATCAAGATCTGATCAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGA TTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAA CAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTT CTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGG CTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAA GCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCAC CTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTT GATCCGGCTACCTGCCCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACT CGGATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCG CCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTG ACTCATGGCGATGCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTC ATCGACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGT GATATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATC GCCGCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCG GGACTCTGGGGTTCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAA GGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAA AGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCT CCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGAC AGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCC GACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTC TCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTG TGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGA GTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAG CAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTA CACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAG AGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTG CAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTAC GGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATC AAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATG GCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGT AATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCG ATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCG CTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTG CCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGA TCGAGATCTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACA GAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGT GAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCA GGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTT TGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGA AGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTA AGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTT TTCTAAATACATTCAAATATGTATCCGCTCAT
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