LHX5 ORF clone FHC11357

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KOP HaloTag ORF List Flexi search

Halotag ORF Clone FHC11357

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Clone info.

Species

human

Clone Name

pFN21AB7668 Sequence (with vector) Restriction Map

Product ID

FHC11357

Flexi Clone PID

FXC11357

ORF Sequence

DNA sequence (1206 bp)
Protein sequence (402 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB528952]

Gene

KIBB7668

Symbol

LHX5

Description

LIM homeobox 5

Original Clone ID

cs00168

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

Cell image

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 1206 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 402 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS9171.1 2.6e-79 100.0 LHX5 CCDS11316.1 1e-58 74.6 LHX1 CCDS1338.1 2.7e-13 37.1 LHX4 CCDS6994.1 1e-11 38.7 LHX3 CCDS6995.1 1e-11 38.7 LHX3 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR001781 5 60 PF00412 Zinc finger IPR001781 64 121 PF00412 Zinc finger IPR001356 181 237 PF00046 Homeobox HMMSmart IPR001781 4 55 SM00132 Zinc finger IPR001781 63 118 SM00132 Zinc finger IPR001356 180 242 SM00389 Homeobox ProfileScan IPR001781 3 62 PS50023 Zinc finger IPR001781 63 125 PS50023 Zinc finger IPR001356 178 238 PS50071 Homeobox
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_071758 402 605992 100.0 100.0 NP_005559 406 601999 74.6 99.8 NP_203129 390 262700,602146 37.1 98.3 XP_016870657 373 221750,600577 38.7 98.0 XP_005263467 386 221750,600577 38.7 98.0 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AB7668 Download

>KIBB7668  1206 bp
ATGATGGTGCACTGCGCCGGTTGCGAGCGGCCCATCCTCGACCGCTTTCTGCTGAACGTG
CTGGACCGCGCGTGGCACATCAAATGTGTTCAGTGCTGCGAGTGCAAAACCAACCTCTCG
GAGAAGTGCTTCTCGCGCGAGGGCAAGCTCTACTGCAAAAATGACTTTTTCAGGCGCTTT
GGCACGAAATGCGCCGGCTGCGCGCAAGGCATCTCGCCCAGCGACCTGGTGCGCAAGGCC
CGGAGCAAAGTCTTTCACCTCAACTGTTTCACCTGCATGGTGTGTAACAAGCAGCTGTCC
ACCGGCGAGGAGCTCTACGTCATCGACGAGAACAAGTTCGTGTGCAAAGACGACTACCTG
AGCTCATCCAGCCTCAAGGAGGGCAGCCTCAACTCAGTGTCATCCTGTACGGACCGCAGT
TTGTCCCCGGACCTCCAGGACGCACTGCAGGACGACCCCAAAGAGACGGACAACTCGACC
TCGTCGGACAAGGAGACGGCCAACAACGAGAACGAGGAGCAGAACTCGGGCACCAAGCGG
CGCGGCCCCCGCACCACCATCAAGGCCAAGCAGCTGGAGACGCTCAAGGCTGCCTTCGCC
GCCACGCCCAAGCCCACGCGCCACATCCGCGAGCAGCTGGCGCAGGAGACCGGCCTCAAC
ATGCGCGTCATCCAGGTGTGGTTTCAGAACCGACGGTCCAAAGAACGCCGGATGAAACAG
CTGAGCGCCCTAGGCGCCCGGAGGCACGCCTTCTTCCGGAGTCCGCGGCGCATGCGTCCG
CTGGGCGGCCGCTTGGACGAGTCTGAGATGTTGGGGTCCACCCCGTACACCTACTACGGA
GACTACCAAGGCGACTACTACGCGCCGGGAAGCAACTACGACTTCTTCGCGCACGGCCCG
CCTTCGCAGGCGCAGTCCCCGGCCGACTCCAGCTTCCTGGCGGCCTCTGGCCCCGGCTCG
ACGCCGCTGGGAGCGCTGGAACCGCCGCTCGCCGGCCCGCACGCCGCGGACAACCCCAGG
TTCACCGACATGATCTCGCACCCGGACACACCGAGCCCCGAGCCAGGCCTGCCGGGCACG
CTGCACCCCATGCCCGGCGAGGTATTCAGCGGCGGGCCCAGCCCGCCCTTCCCAATGAGC
GGCACCAGCGGCTACAGCGGACCCCTGTCGCATCCCAACCCCGAGCTCAACGAAGCCGCC
GTGTGG

ORF Protein

Cloned ORF protein sequence for pFN21AB7668 Download

>KIBB7668  402 aa
MMVHCAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRF
GTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYL
SSSSLKEGSLNSVSSCTDRSLSPDLQDALQDDPKETDNSTSSDKETANNENEEQNSGTKR
RGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQ
LSALGARRHAFFRSPRRMRPLGGRLDESEMLGSTPYTYYGDYQGDYYAPGSNYDFFAHGP
PSQAQSPADSSFLAASGPGSTPLGALEPPLAGPHAADNPRFTDMISHPDTPSPEPGLPGT
LHPMPGEVFSGGPSPPFPMSGTSGYSGPLSHPNPELNEAAVW

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AB7668 Download

>pFN21AB7668  5911 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGATGGTGCACTGCGCCGGTTGCGAGCGGCCCAT
CCTCGACCGCTTTCTGCTGAACGTGCTGGACCGCGCGTGGCACATCAAATGTGTTCAGTG
CTGCGAGTGCAAAACCAACCTCTCGGAGAAGTGCTTCTCGCGCGAGGGCAAGCTCTACTG
CAAAAATGACTTTTTCAGGCGCTTTGGCACGAAATGCGCCGGCTGCGCGCAAGGCATCTC
GCCCAGCGACCTGGTGCGCAAGGCCCGGAGCAAAGTCTTTCACCTCAACTGTTTCACCTG
CATGGTGTGTAACAAGCAGCTGTCCACCGGCGAGGAGCTCTACGTCATCGACGAGAACAA
GTTCGTGTGCAAAGACGACTACCTGAGCTCATCCAGCCTCAAGGAGGGCAGCCTCAACTC
AGTGTCATCCTGTACGGACCGCAGTTTGTCCCCGGACCTCCAGGACGCACTGCAGGACGA
CCCCAAAGAGACGGACAACTCGACCTCGTCGGACAAGGAGACGGCCAACAACGAGAACGA
GGAGCAGAACTCGGGCACCAAGCGGCGCGGCCCCCGCACCACCATCAAGGCCAAGCAGCT
GGAGACGCTCAAGGCTGCCTTCGCCGCCACGCCCAAGCCCACGCGCCACATCCGCGAGCA
GCTGGCGCAGGAGACCGGCCTCAACATGCGCGTCATCCAGGTGTGGTTTCAGAACCGACG
GTCCAAAGAACGCCGGATGAAACAGCTGAGCGCCCTAGGCGCCCGGAGGCACGCCTTCTT
CCGGAGTCCGCGGCGCATGCGTCCGCTGGGCGGCCGCTTGGACGAGTCTGAGATGTTGGG
GTCCACCCCGTACACCTACTACGGAGACTACCAAGGCGACTACTACGCGCCGGGAAGCAA
CTACGACTTCTTCGCGCACGGCCCGCCTTCGCAGGCGCAGTCCCCGGCCGACTCCAGCTT
CCTGGCGGCCTCTGGCCCCGGCTCGACGCCGCTGGGAGCGCTGGAACCGCCGCTCGCCGG
CCCGCACGCCGCGGACAACCCCAGGTTCACCGACATGATCTCGCACCCGGACACACCGAG
CCCCGAGCCAGGCCTGCCGGGCACGCTGCACCCCATGCCCGGCGAGGTATTCAGCGGCGG
GCCCAGCCCGCCCTTCCCAATGAGCGGCACCAGCGGCTACAGCGGACCCCTGTCGCATCC
CAACCCCGAGCTCAACGAAGCCGCCGTGTGGGTTTAAACGAATTCGGGCTCGGTACCCGG
GGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAA
AGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCGG
CCGCTTCGAGCAGACATGATAAGATACATTGATGAGTTTGGACAAACCACAACTAGAATG
CAGTGAAAAAAATGCTTTATTTGTGAAATTTGTGATGCTATTGCTTTATTTGTAACCATT
ATAAGCTGCAATAAACAAGTTAACAACAACAATTGCATTCATTTTATGTTTCAGGTTCAG
GGGGAGATGTGGGAGGTTTTTTTAAGCAAGTAAAACCTCTACAAATGTGGTAAAATCGAA
TTCTAATGGATCCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACA
TTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTAATGGTTTCTTAGACG
TCAGGTGGCACTTTTCGGGGAAATGTGCGCGGAACCCCTATTTGTTTATTTTTCTAAATA
CATTCAAATATGTATCCGCTCATGAGACAATAACCCTGATAAATGCTTCAATAATATTGA
AAAAGGAAGAGTATGAGTATTCAACATTTCCGTGTCGCCCTTATTCCCTTTTTTGCGGCA
TTTTGCCTTCCTGTTTTTGCTCACCCAGAAACGCTGGTGAAAGTAAAAGATGCTGAAGAT
CAGTTGGGTGCACGAGTGGGTTACATCGAACTGGATCTCAACAGCGGTAAGATCCTTGAG
AGTTTTCGCCCCGAAGAACGTTTTCCAATGATGAGCACTTTCAAAGTTCTGCTATGTGGC
GCGGTATTATCCCGTATTGACGCCGGGCAAGAGCAACTCGGTCGCCGCATACACTATTCT
CAGAATGACTTGGTTGAGTACTCACCAGTCACAGAAAAGCATCTTACGGATGGCATGACA
GTAAGAGAATTATGCAGTGCTGCCATAACCATGAGTGATAACACTGCGGCCAACTTACTT
CTGACAACTATCGGAGGACCGAAGGAGCTAACCGCTTTTTTGCACAACATGGGGGATCAT
GTAACTCGCCTTGATCGTTGGGAACCGGAGCTGAATGAAGCCATACCAAACGACGAGCGT
GACACCACGATGCCTGTAGCAATGGCAACAACGTTGCGCAAACTATTAACTGGCGAACTA
CTTACTCTAGCTTCCCGGCAACAATTAATAGACTGGATGGAGGCGGATAAAGTTGCAGGA
CCACTTCTGCGCTCGGCCCTTCCGGCTGGCTGGTTTATTGCTGATAAATCTGGAGCCGGT
GAGCGTGGGTCTCGCGGTATCATTGCAGCACTGGGGCCAGATGGTAAGCCCTCCCGTATC
GTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCT
GAGATAGGTGCCTCACTGATTAAGCATTGGTAATTCGAAATGACCGACCAAGCGACGCCC
AACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACG
CAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGT
TGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAA
GTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCT
CCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCC
CTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGG
TCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCT
TATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAG
CAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGA
AGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGA
AGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTG
GTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAG
AAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAG
GGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAA
ATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAG
CTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATA
CGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTA
CCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTA
TGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCC
ACGATGCGTCCGGCGTAGAGGATCGAGATCT