SF3B4 ORF clone FHC08175

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KOP HaloTag ORF List Flexi search

Halotag ORF Clone FHC08175

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Clone info.

Species

human

Clone Name

pFN21AB6663 Sequence (with vector) Restriction Map

Product ID

FHC08175

Flexi Clone PID

FXC08175

ORF Sequence

DNA sequence (1272 bp)
Protein sequence (424 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB528332]

Gene

KIBB6663

Symbol

SF3B4

Alias : AFD1, Hsh49, SAP49, SF3b49

Description

splicing factor 3b, subunit 4, 49kDa

Original Clone ID

cs01263

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

Cell image

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 1272 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 424 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS72900.1 2.8e-56 100.0 SF3B4 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition FPrintScan NULL 215 227 PR01217 NULL NULL 233 249 PR01217 NULL NULL 256 268 PR01217 NULL NULL 291 307 PR01217 NULL NULL 326 351 PR01217 NULL HMMPfam IPR000504 15 85 PF00076 RNA recognition motif domain IPR000504 102 173 PF00076 RNA recognition motif domain HMMSmart IPR000504 14 87 SM00360 RNA recognition motif domain IPR000504 101 175 SM00360 RNA recognition motif domain ProfileScan IPR000504 13 91 PS50102 RNA recognition motif domain IPR000504 100 179 PS50102 RNA recognition motif domain
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_005841 424 154400,605593 100.0 100.0 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AB6663 Download

>KIBB6663  1272 bp
ATGGCTGCCGGGCCGATCTCCGAGCGGAATCAGGATGCCACTGTGTACGTGGGGGGCCTG
GATGAGAAGGTTAGTGAACCGCTGCTGTGGGAACTGTTTCTCCAGGCTGGACCAGTAGTC
AACACCCACATGCCAAAGGATAGAGTCACTGGCCAGCACCAAGGCTATGGCTTTGTGGAA
TTCTTGAGTGAGGAAGATGCTGACTATGCCATTAAGATCATGAACATGATCAAACTCTAT
GGGAAGCCAATACGGGTGAACAAAGCATCAGCTCACAACAAAAACCTGGATGTAGGGGCC
AACATTTTCATTGGGAACCTGGACCCTGAGATTGATGAGAAGTTGCTTTATGATACTTTC
AGCGCCTTTGGGGTCATCTTACAAACCCCCAAAATTATGCGGGACCCTGACACAGGCAAC
TCCAAAGGTTATGCCTTTATTAATTTTGCTTCATTTGATGCTTCGGATGCAGCAATTGAA
GCCATGAATGGGCAGTACCTCTGTAACCGTCCTATCACCGTATCTTATGCCTTCAAGAAG
GACTCCAAGGGTGAGCGCCATGGCTCAGCAGCCGAACGACTTCTGGCAGCTCAGAACCCG
CTCTCCCAGGCTGATCGCCCTCATCAGCTGTTTGCAGATGCACCTCCTCCACCCTCTGCT
CCCAATCCTGTGGTATCATCATTGGGGTCTGGGCTTCCTCCACCAGGCATGCCTCCTCCT
GGCTCCTTCCCACCCCCAGTGCCACCTCCTGGAGCCCTCCCACCTGGGATACCCCCAGCC
ATGCCCCCACCACCTATGCCTCCTGGGGCTGCAGGACATGGCCCCCCATCGGCAGGAACC
CCAGGGGCAGGACATCCTGGTCATGGACACTCACATCCTCACCCATTCCCACCGGGTGGG
ATGCCCCATCCAGGGATGTCTCAGATGCAGCTTGCACACCATGGCCCTCATGGCTTAGGA
CATCCCCACGCTGGACCCCCAGGCTCTGGGGGCCAGCCACCGCCCCGACCACCACCTGGA
ATGCCTCATCCTGGACCTCCTCCAATGGGCATGCCCCCCCGAGGGCCTCCATTCGGATCT
CCCATGGGTCACCCAGGTCCTATGCCTCCGCATGGTATGCGTGGACCTCCTCCACTGATG
CCCCCCCATGGATACACTGGCCCTCCACGACCCCCACCCTATGGCTACCAGCGGGGGCCT
CTCCCTCCACCCAGACCCACTCCCCGGCCACCAGTTCCCCCTCGAGGCCCACTTCGAGGC
CCTCTCCCTCAG

ORF Protein

Cloned ORF protein sequence for pFN21AB6663 Download

>KIBB6663  424 aa
MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVE
FLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTF
SAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK
DSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPP
GSFPPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPGHGHSHPHPFPPGG
MPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGMPPRGPPFGS
PMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRPTPRPPVPPRGPLRG
PLPQ

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AB6663 Download

>pFN21AB6663  5977 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGGCTGCCGGGCCGATCTCCGAGCGGAATCAGGA
TGCCACTGTGTACGTGGGGGGCCTGGATGAGAAGGTTAGTGAACCGCTGCTGTGGGAACT
GTTTCTCCAGGCTGGACCAGTAGTCAACACCCACATGCCAAAGGATAGAGTCACTGGCCA
GCACCAAGGCTATGGCTTTGTGGAATTCTTGAGTGAGGAAGATGCTGACTATGCCATTAA
GATCATGAACATGATCAAACTCTATGGGAAGCCAATACGGGTGAACAAAGCATCAGCTCA
CAACAAAAACCTGGATGTAGGGGCCAACATTTTCATTGGGAACCTGGACCCTGAGATTGA
TGAGAAGTTGCTTTATGATACTTTCAGCGCCTTTGGGGTCATCTTACAAACCCCCAAAAT
TATGCGGGACCCTGACACAGGCAACTCCAAAGGTTATGCCTTTATTAATTTTGCTTCATT
TGATGCTTCGGATGCAGCAATTGAAGCCATGAATGGGCAGTACCTCTGTAACCGTCCTAT
CACCGTATCTTATGCCTTCAAGAAGGACTCCAAGGGTGAGCGCCATGGCTCAGCAGCCGA
ACGACTTCTGGCAGCTCAGAACCCGCTCTCCCAGGCTGATCGCCCTCATCAGCTGTTTGC
AGATGCACCTCCTCCACCCTCTGCTCCCAATCCTGTGGTATCATCATTGGGGTCTGGGCT
TCCTCCACCAGGCATGCCTCCTCCTGGCTCCTTCCCACCCCCAGTGCCACCTCCTGGAGC
CCTCCCACCTGGGATACCCCCAGCCATGCCCCCACCACCTATGCCTCCTGGGGCTGCAGG
ACATGGCCCCCCATCGGCAGGAACCCCAGGGGCAGGACATCCTGGTCATGGACACTCACA
TCCTCACCCATTCCCACCGGGTGGGATGCCCCATCCAGGGATGTCTCAGATGCAGCTTGC
ACACCATGGCCCTCATGGCTTAGGACATCCCCACGCTGGACCCCCAGGCTCTGGGGGCCA
GCCACCGCCCCGACCACCACCTGGAATGCCTCATCCTGGACCTCCTCCAATGGGCATGCC
CCCCCGAGGGCCTCCATTCGGATCTCCCATGGGTCACCCAGGTCCTATGCCTCCGCATGG
TATGCGTGGACCTCCTCCACTGATGCCCCCCCATGGATACACTGGCCCTCCACGACCCCC
ACCCTATGGCTACCAGCGGGGGCCTCTCCCTCCACCCAGACCCACTCCCCGGCCACCAGT
TCCCCCTCGAGGCCCACTTCGAGGCCCTCTCCCTCAGGTTTAAACGAATTCGGGCTCGGT
ACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAG
CCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTG
GGGCGGCCGCTTCGAGCAGACATGATAAGATACATTGATGAGTTTGGACAAACCACAACT
AGAATGCAGTGAAAAAAATGCTTTATTTGTGAAATTTGTGATGCTATTGCTTTATTTGTA
ACCATTATAAGCTGCAATAAACAAGTTAACAACAACAATTGCATTCATTTTATGTTTCAG
GTTCAGGGGGAGATGTGGGAGGTTTTTTTAAGCAAGTAAAACCTCTACAAATGTGGTAAA
ATCGAATTCTAATGGATCCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAG
CTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTAATGGTTTCT
TAGACGTCAGGTGGCACTTTTCGGGGAAATGTGCGCGGAACCCCTATTTGTTTATTTTTC
TAAATACATTCAAATATGTATCCGCTCATGAGACAATAACCCTGATAAATGCTTCAATAA
TATTGAAAAAGGAAGAGTATGAGTATTCAACATTTCCGTGTCGCCCTTATTCCCTTTTTT
GCGGCATTTTGCCTTCCTGTTTTTGCTCACCCAGAAACGCTGGTGAAAGTAAAAGATGCT
GAAGATCAGTTGGGTGCACGAGTGGGTTACATCGAACTGGATCTCAACAGCGGTAAGATC
CTTGAGAGTTTTCGCCCCGAAGAACGTTTTCCAATGATGAGCACTTTCAAAGTTCTGCTA
TGTGGCGCGGTATTATCCCGTATTGACGCCGGGCAAGAGCAACTCGGTCGCCGCATACAC
TATTCTCAGAATGACTTGGTTGAGTACTCACCAGTCACAGAAAAGCATCTTACGGATGGC
ATGACAGTAAGAGAATTATGCAGTGCTGCCATAACCATGAGTGATAACACTGCGGCCAAC
TTACTTCTGACAACTATCGGAGGACCGAAGGAGCTAACCGCTTTTTTGCACAACATGGGG
GATCATGTAACTCGCCTTGATCGTTGGGAACCGGAGCTGAATGAAGCCATACCAAACGAC
GAGCGTGACACCACGATGCCTGTAGCAATGGCAACAACGTTGCGCAAACTATTAACTGGC
GAACTACTTACTCTAGCTTCCCGGCAACAATTAATAGACTGGATGGAGGCGGATAAAGTT
GCAGGACCACTTCTGCGCTCGGCCCTTCCGGCTGGCTGGTTTATTGCTGATAAATCTGGA
GCCGGTGAGCGTGGGTCTCGCGGTATCATTGCAGCACTGGGGCCAGATGGTAAGCCCTCC
CGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAG
ATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAATTCGAAATGACCGACCAAGCG
ACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGG
ATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGG
CCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGAC
GCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTG
GAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCT
TTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGG
TGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCT
GCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCAC
TGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGT
TCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGCTC
TGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCA
CCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGAT
TTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTCAC
GTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTATAGT
CCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAA
TGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTA
TTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCA
TTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAG
GGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACT
CCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCT