Result of FASTA (omim) for
pFN21AB6663
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6663, 424 aa
1>>>pF1KB6663 424 - 424 aa - 424 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 14.5805+/-0.000544; mu= -18.6243+/- 0.034
mean_var=990.6158+/-207.122, 0's: 0 Z-trim(125.9): 234 B-trim: 909 in 1/59
Lambda= 0.040749
statistics sampled from 50225 (50603) to 50225 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.823), E-opt: 0.2 (0.593), width: 16
Scan time: 11.610
The best scores are: opt bits E(85289)
NP_005841 (OMIM: 154400,605593) splicing factor 3B ( 424) 3164 201.0 4.9e-51
XP_016857329 (OMIM: 606373,616193) PREDICTED: form (1102) 515 45.8 0.00066
XP_016857330 (OMIM: 606373,616193) PREDICTED: form (1102) 515 45.8 0.00066
XP_016857328 (OMIM: 606373,616193) PREDICTED: form (1159) 515 45.8 0.00068
XP_011542539 (OMIM: 606373,616193) PREDICTED: form (1360) 515 45.9 0.00074
XP_016857327 (OMIM: 606373,616193) PREDICTED: form (1384) 515 45.9 0.00075
XP_016857326 (OMIM: 606373,616193) PREDICTED: form (1417) 515 45.9 0.00076
NP_064450 (OMIM: 606373,616193) formin-2 isoform 2 (1722) 515 46.0 0.00086
NP_001292353 (OMIM: 606373,616193) formin-2 isofor (1726) 515 46.0 0.00086
NP_006240 (OMIM: 168840) basic salivary proline-ri ( 309) 449 41.2 0.0045
NP_005030 (OMIM: 180989) basic salivary proline-ri ( 331) 442 40.8 0.0063
NP_061939 (OMIM: 176270,605283,615547) MAGE-like p (1249) 461 42.7 0.0064
>>NP_005841 (OMIM: 154400,605593) splicing factor 3B sub (424 aa)
initn: 3164 init1: 3164 opt: 3164 Z-score: 1037.2 bits: 201.0 E(85289): 4.9e-51
Smith-Waterman score: 3164; 100.0% identity (100.0% similar) in 424 aa overlap (1-424:1-424)
10 20 30 40 50 60
pF1KB6 MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 FLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 FLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 DSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 DSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 GSFPPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPGHGHSHPHPFPPGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GSFPPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPGHGHSHPHPFPPGG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 MPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGMPPRGPPFGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGMPPRGPPFGS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB6 PMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRPTPRPPVPPRGPLRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRPTPRPPVPPRGPLRG
370 380 390 400 410 420
pF1KB6 PLPQ
::::
NP_005 PLPQ
>>XP_016857329 (OMIM: 606373,616193) PREDICTED: formin-2 (1102 aa)
initn: 1060 init1: 321 opt: 515 Z-score: 191.2 bits: 45.8 E(85289): 0.00066
Smith-Waterman score: 542; 42.1% identity (52.1% similar) in 240 aa overlap (212-424:298-528)
190 200 210 220 230
pF1KB6 SKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSL----GSGLPPPGM
: :::: :. . : :.:.:::
XP_016 VPTLPSTAIPQPPPLQGTEMLPPPPPPLPGAGIPPPPPLPGAGILPLPPLPGAGIPPP--
270 280 290 300 310 320
240 250 260 270 280
pF1KB6 PP-PGS-FPPPVPPPGA---LPPGIPPA-MPPPPMPPGAAGHGPPSAGTPGAG------H
:: ::. .::: : ::: ::: .: : .:::: :::. :: ::::
XP_016 PPLPGAAIPPPPPLPGAGIPLPPPLPGAGIPPPPPLPGAG--IPPPPPLPGAGIPPPPPL
330 340 350 360 370 380
290 300 310 320 330 340
pF1KB6 PGHGHSHPHPFPPGGMPHPG-MSQMQLAHHGP-HGLGHPHAGP-PGSGGQPPPRPPPGMP
:: : : :.: .:.: : . . : : : : : ::.: ::: : ::
XP_016 PGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPP-PLPGAG
390 400 410 420 430 440
350 360 370 380 390
pF1KB6 HPGPPPM---GMPPRGPPFGSPMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRG
: :::. :.:: : :. . : :.: :. ::: :: .: : :::
XP_016 IPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGI--PPP--PPLPGVGIPPPPPLPGAGI
450 460 470 480 490
400 410 420
pF1KB6 PLPPPRP----TPRPPVPPRG-PLRGPLPQ
: ::: : : ::.: : : :::.
XP_016 PPPPPLPGAGIPPPPPLPGAGIPPPPPLPRVGIPPPPPLPGAGIPPPPPLPGAGIPPPPP
500 510 520 530 540 550
>>XP_016857330 (OMIM: 606373,616193) PREDICTED: formin-2 (1102 aa)
initn: 1060 init1: 321 opt: 515 Z-score: 191.2 bits: 45.8 E(85289): 0.00066
Smith-Waterman score: 542; 42.1% identity (52.1% similar) in 240 aa overlap (212-424:298-528)
190 200 210 220 230
pF1KB6 SKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSL----GSGLPPPGM
: :::: :. . : :.:.:::
XP_016 VPTLPSTAIPQPPPLQGTEMLPPPPPPLPGAGIPPPPPLPGAGILPLPPLPGAGIPPP--
270 280 290 300 310 320
240 250 260 270 280
pF1KB6 PP-PGS-FPPPVPPPGA---LPPGIPPA-MPPPPMPPGAAGHGPPSAGTPGAG------H
:: ::. .::: : ::: ::: .: : .:::: :::. :: ::::
XP_016 PPLPGAAIPPPPPLPGAGIPLPPPLPGAGIPPPPPLPGAG--IPPPPPLPGAGIPPPPPL
330 340 350 360 370 380
290 300 310 320 330 340
pF1KB6 PGHGHSHPHPFPPGGMPHPG-MSQMQLAHHGP-HGLGHPHAGP-PGSGGQPPPRPPPGMP
:: : : :.: .:.: : . . : : : : : ::.: ::: : ::
XP_016 PGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPP-PLPGAG
390 400 410 420 430 440
350 360 370 380 390
pF1KB6 HPGPPPM---GMPPRGPPFGSPMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRG
: :::. :.:: : :. . : :.: :. ::: :: .: : :::
XP_016 IPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGI--PPP--PPLPGVGIPPPPPLPGAGI
450 460 470 480 490
400 410 420
pF1KB6 PLPPPRP----TPRPPVPPRG-PLRGPLPQ
: ::: : : ::.: : : :::.
XP_016 PPPPPLPGAGIPPPPPLPGAGIPPPPPLPRVGIPPPPPLPGAGIPPPPPLPGAGIPPPPP
500 510 520 530 540 550
>>XP_016857328 (OMIM: 606373,616193) PREDICTED: formin-2 (1159 aa)
initn: 1060 init1: 321 opt: 515 Z-score: 190.9 bits: 45.8 E(85289): 0.00068
Smith-Waterman score: 542; 42.1% identity (52.1% similar) in 240 aa overlap (212-424:355-585)
190 200 210 220 230
pF1KB6 SKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSL----GSGLPPPGM
: :::: :. . : :.:.:::
XP_016 VPTLPSTAIPQPPPLQGTEMLPPPPPPLPGAGIPPPPPLPGAGILPLPPLPGAGIPPP--
330 340 350 360 370 380
240 250 260 270 280
pF1KB6 PP-PGS-FPPPVPPPGA---LPPGIPPA-MPPPPMPPGAAGHGPPSAGTPGAG------H
:: ::. .::: : ::: ::: .: : .:::: :::. :: ::::
XP_016 PPLPGAAIPPPPPLPGAGIPLPPPLPGAGIPPPPPLPGAG--IPPPPPLPGAGIPPPPPL
390 400 410 420 430 440
290 300 310 320 330 340
pF1KB6 PGHGHSHPHPFPPGGMPHPG-MSQMQLAHHGP-HGLGHPHAGP-PGSGGQPPPRPPPGMP
:: : : :.: .:.: : . . : : : : : ::.: ::: : ::
XP_016 PGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPP-PLPGAG
450 460 470 480 490
350 360 370 380 390
pF1KB6 HPGPPPM---GMPPRGPPFGSPMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRG
: :::. :.:: : :. . : :.: :. ::: :: .: : :::
XP_016 IPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGI--PPP--PPLPGVGIPPPPPLPGAGI
500 510 520 530 540 550
400 410 420
pF1KB6 PLPPPRP----TPRPPVPPRG-PLRGPLPQ
: ::: : : ::.: : : :::.
XP_016 PPPPPLPGAGIPPPPPLPGAGIPPPPPLPRVGIPPPPPLPGAGIPPPPPLPGAGIPPPPP
560 570 580 590 600 610
>>XP_011542539 (OMIM: 606373,616193) PREDICTED: formin-2 (1360 aa)
initn: 1060 init1: 321 opt: 515 Z-score: 190.2 bits: 45.9 E(85289): 0.00074
Smith-Waterman score: 542; 42.1% identity (52.1% similar) in 240 aa overlap (212-424:922-1152)
190 200 210 220 230
pF1KB6 SKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSL----GSGLPPPGM
: :::: :. . : :.:.:::
XP_011 VPTLPSTAIPQPPPLQGTEMLPPPPPPLPGAGIPPPPPLPGAGILPLPPLPGAGIPPP--
900 910 920 930 940
240 250 260 270 280
pF1KB6 PP-PGS-FPPPVPPPGA---LPPGIPPA-MPPPPMPPGAAGHGPPSAGTPGAG------H
:: ::. .::: : ::: ::: .: : .:::: :::. :: ::::
XP_011 PPLPGAAIPPPPPLPGAGIPLPPPLPGAGIPPPPPLPGAG--IPPPPPLPGAGIPPPPPL
950 960 970 980 990 1000
290 300 310 320 330 340
pF1KB6 PGHGHSHPHPFPPGGMPHPG-MSQMQLAHHGP-HGLGHPHAGP-PGSGGQPPPRPPPGMP
:: : : :.: .:.: : . . : : : : : ::.: ::: : ::
XP_011 PGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPP-PLPGAG
1010 1020 1030 1040 1050 1060
350 360 370 380 390
pF1KB6 HPGPPPM---GMPPRGPPFGSPMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRG
: :::. :.:: : :. . : :.: :. ::: :: .: : :::
XP_011 IPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGI--PPP--PPLPGVGIPPPPPLPGAGI
1070 1080 1090 1100 1110 1120
400 410 420
pF1KB6 PLPPPRP----TPRPPVPPRG-PLRGPLPQ
: ::: : : ::.: : : :::.
XP_011 PPPPPLPGAGIPPPPPLPGAGIPPPPPLPRVGIPPPPPLPGAGIPPPPPLPGAGIPPPPP
1130 1140 1150 1160 1170 1180
>>XP_016857327 (OMIM: 606373,616193) PREDICTED: formin-2 (1384 aa)
initn: 1060 init1: 321 opt: 515 Z-score: 190.1 bits: 45.9 E(85289): 0.00075
Smith-Waterman score: 542; 42.1% identity (52.1% similar) in 240 aa overlap (212-424:922-1152)
190 200 210 220 230
pF1KB6 SKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSL----GSGLPPPGM
: :::: :. . : :.:.:::
XP_016 VPTLPSTAIPQPPPLQGTEMLPPPPPPLPGAGIPPPPPLPGAGILPLPPLPGAGIPPP--
900 910 920 930 940
240 250 260 270 280
pF1KB6 PP-PGS-FPPPVPPPGA---LPPGIPPA-MPPPPMPPGAAGHGPPSAGTPGAG------H
:: ::. .::: : ::: ::: .: : .:::: :::. :: ::::
XP_016 PPLPGAAIPPPPPLPGAGIPLPPPLPGAGIPPPPPLPGAG--IPPPPPLPGAGIPPPPPL
950 960 970 980 990 1000
290 300 310 320 330 340
pF1KB6 PGHGHSHPHPFPPGGMPHPG-MSQMQLAHHGP-HGLGHPHAGP-PGSGGQPPPRPPPGMP
:: : : :.: .:.: : . . : : : : : ::.: ::: : ::
XP_016 PGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPP-PLPGAG
1010 1020 1030 1040 1050 1060
350 360 370 380 390
pF1KB6 HPGPPPM---GMPPRGPPFGSPMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRG
: :::. :.:: : :. . : :.: :. ::: :: .: : :::
XP_016 IPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGI--PPP--PPLPGVGIPPPPPLPGAGI
1070 1080 1090 1100 1110 1120
400 410 420
pF1KB6 PLPPPRP----TPRPPVPPRG-PLRGPLPQ
: ::: : : ::.: : : :::.
XP_016 PPPPPLPGAGIPPPPPLPGAGIPPPPPLPRVGIPPPPPLPGAGIPPPPPLPGAGIPPPPP
1130 1140 1150 1160 1170 1180
>>XP_016857326 (OMIM: 606373,616193) PREDICTED: formin-2 (1417 aa)
initn: 1060 init1: 321 opt: 515 Z-score: 190.0 bits: 45.9 E(85289): 0.00076
Smith-Waterman score: 542; 42.1% identity (52.1% similar) in 240 aa overlap (212-424:922-1152)
190 200 210 220 230
pF1KB6 SKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSL----GSGLPPPGM
: :::: :. . : :.:.:::
XP_016 VPTLPSTAIPQPPPLQGTEMLPPPPPPLPGAGIPPPPPLPGAGILPLPPLPGAGIPPP--
900 910 920 930 940
240 250 260 270 280
pF1KB6 PP-PGS-FPPPVPPPGA---LPPGIPPA-MPPPPMPPGAAGHGPPSAGTPGAG------H
:: ::. .::: : ::: ::: .: : .:::: :::. :: ::::
XP_016 PPLPGAAIPPPPPLPGAGIPLPPPLPGAGIPPPPPLPGAG--IPPPPPLPGAGIPPPPPL
950 960 970 980 990 1000
290 300 310 320 330 340
pF1KB6 PGHGHSHPHPFPPGGMPHPG-MSQMQLAHHGP-HGLGHPHAGP-PGSGGQPPPRPPPGMP
:: : : :.: .:.: : . . : : : : : ::.: ::: : ::
XP_016 PGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPP-PLPGAG
1010 1020 1030 1040 1050 1060
350 360 370 380 390
pF1KB6 HPGPPPM---GMPPRGPPFGSPMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRG
: :::. :.:: : :. . : :.: :. ::: :: .: : :::
XP_016 IPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGI--PPP--PPLPGVGIPPPPPLPGAGI
1070 1080 1090 1100 1110 1120
400 410 420
pF1KB6 PLPPPRP----TPRPPVPPRG-PLRGPLPQ
: ::: : : ::.: : : :::.
XP_016 PPPPPLPGAGIPPPPPLPGAGIPPPPPLPRVGIPPPPPLPGAGIPPPPPLPGAGIPPPPP
1130 1140 1150 1160 1170 1180
>>NP_064450 (OMIM: 606373,616193) formin-2 isoform 2 [Ho (1722 aa)
initn: 1060 init1: 321 opt: 515 Z-score: 189.1 bits: 46.0 E(85289): 0.00086
Smith-Waterman score: 542; 42.1% identity (52.1% similar) in 240 aa overlap (212-424:918-1148)
190 200 210 220 230
pF1KB6 SKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSL----GSGLPPPGM
: :::: :. . : :.:.:::
NP_064 VPTLPSTAIPQPPPLQGTEMLPPPPPPLPGAGIPPPPPLPGAGILPLPPLPGAGIPPP--
890 900 910 920 930 940
240 250 260 270 280
pF1KB6 PP-PGS-FPPPVPPPGA---LPPGIPPA-MPPPPMPPGAAGHGPPSAGTPGAG------H
:: ::. .::: : ::: ::: .: : .:::: :::. :: ::::
NP_064 PPLPGAAIPPPPPLPGAGIPLPPPLPGAGIPPPPPLPGAG--IPPPPPLPGAGIPPPPPL
950 960 970 980 990 1000
290 300 310 320 330 340
pF1KB6 PGHGHSHPHPFPPGGMPHPG-MSQMQLAHHGP-HGLGHPHAGP-PGSGGQPPPRPPPGMP
:: : : :.: .:.: : . . : : : : : ::.: ::: : ::
NP_064 PGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPP-PLPGAG
1010 1020 1030 1040 1050 1060
350 360 370 380 390
pF1KB6 HPGPPPM---GMPPRGPPFGSPMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRG
: :::. :.:: : :. . : :.: :. ::: :: .: : :::
NP_064 IPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGI--PPP--PPLPGVGIPPPPPLPGAGI
1070 1080 1090 1100 1110
400 410 420
pF1KB6 PLPPPRP----TPRPPVPPRG-PLRGPLPQ
: ::: : : ::.: : : :::.
NP_064 PPPPPLPGAGIPPPPPLPGAGIPPPPPLPRVGIPPPPPLPGAGIPPPPPLPGAGIPPPPP
1120 1130 1140 1150 1160 1170
>>NP_001292353 (OMIM: 606373,616193) formin-2 isoform 1 (1726 aa)
initn: 1060 init1: 321 opt: 515 Z-score: 189.1 bits: 46.0 E(85289): 0.00086
Smith-Waterman score: 542; 42.1% identity (52.1% similar) in 240 aa overlap (212-424:922-1152)
190 200 210 220 230
pF1KB6 SKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSL----GSGLPPPGM
: :::: :. . : :.:.:::
NP_001 VPTLPSTAIPQPPPLQGTEMLPPPPPPLPGAGIPPPPPLPGAGILPLPPLPGAGIPPP--
900 910 920 930 940
240 250 260 270 280
pF1KB6 PP-PGS-FPPPVPPPGA---LPPGIPPA-MPPPPMPPGAAGHGPPSAGTPGAG------H
:: ::. .::: : ::: ::: .: : .:::: :::. :: ::::
NP_001 PPLPGAAIPPPPPLPGAGIPLPPPLPGAGIPPPPPLPGAG--IPPPPPLPGAGIPPPPPL
950 960 970 980 990 1000
290 300 310 320 330 340
pF1KB6 PGHGHSHPHPFPPGGMPHPG-MSQMQLAHHGP-HGLGHPHAGP-PGSGGQPPPRPPPGMP
:: : : :.: .:.: : . . : : : : : ::.: ::: : ::
NP_001 PGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPP-PLPGAG
1010 1020 1030 1040 1050 1060
350 360 370 380 390
pF1KB6 HPGPPPM---GMPPRGPPFGSPMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRG
: :::. :.:: : :. . : :.: :. ::: :: .: : :::
NP_001 IPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGI--PPP--PPLPGVGIPPPPPLPGAGI
1070 1080 1090 1100 1110 1120
400 410 420
pF1KB6 PLPPPRP----TPRPPVPPRG-PLRGPLPQ
: ::: : : ::.: : : :::.
NP_001 PPPPPLPGAGIPPPPPLPGAGIPPPPPLPRVGIPPPPPLPGAGIPPPPPLPGAGIPPPPP
1130 1140 1150 1160 1170 1180
>>NP_006240 (OMIM: 168840) basic salivary proline-rich p (309 aa)
initn: 748 init1: 269 opt: 449 Z-score: 176.1 bits: 41.2 E(85289): 0.0045
Smith-Waterman score: 483; 36.1% identity (50.7% similar) in 274 aa overlap (179-423:35-292)
150 160 170 180 190 200
pF1KB6 FASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPH
: ... . :. .: . : . ::
NP_006 LLSVALLALSSAQSLNEDVSQEESPSVISGKPEGRRPQGGNQPQR--TPPPPGKPEGRPP
10 20 30 40 50 60
210 220 230 240 250
pF1KB6 QLF--ADAPPP----PSAPNPVVSSLGSGLPP-PGMP---PP-----GSFPPPVP--PPG
: ...::: : .: : .. ..: :: :: : :: .. ::: : : :
NP_006 QGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGQPPQGGNQSQGPPPRPGKPEG
70 80 90 100 110 120
260 270 280 290 300 310
pF1KB6 ALPPGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPGHGHSHPHPFPPGGMPHPGMSQMQL
: : .. ::: : : ::..:. . : : :.: : : : : .: :
NP_006 PPPQGGNQSQGPPPRPGKPEGP-PPQGGNQSQGPP------PRPGKPEGPPPQGGNQSQ-
130 140 150 160 170
320 330 340 350 360
pF1KB6 AHHGPHGLGHPHAGPPGSGGQ---PPPRP-----PP---GMPHPGPPPMGMPPRGPPFGS
:: :.:.. :: .:.: ::::: :: : :::: :.::: .
NP_006 -GPPPHP-GKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPSQG
180 190 200 210 220 230
370 380 390 400 410
pF1KB6 PMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRPTPRPPVPP-RGPLR
:: ::: : : ::. . : :::: : .:: ::: .:. :.:: : .
NP_006 GNKPQGP-PPHP--GKPQGPPPQEGNKPQRPPPPGRPQGP-PPPGGNPQQPLPPPAGKPQ
240 250 260 270 280
420
pF1KB6 GPLPQ
:: :
NP_006 GPPPPPQGGRPHRPPQGQPPQ
290 300
424 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 11:40:24 2016 done: Sat Nov 5 11:40:26 2016
Total Scan time: 11.610 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]