BLASTX alignment cluster 12    (33209..45210)


Local alignments in this cluster

gi|3377816[fasta] (AF076275) contains similarity to Arabidopsis thaliana retrotransposon Athila (GB:X81801) [Arabidopsis thaliana]
Length 940 aa

position (link: detail on the area) subject position direction score

13989..13666 (617..724) - 260
14447..14235 (364..434) - 78
15302..14937 (163..284) - 258
15451..15305 (113..161) - 108
17538..18053 (113..284) + 214
33326..33475 (1..50) + 210
33459..33629 (50..106) + 182
33752..33844 (110..140) + 133
33840..34439 (140..339) + 835
34619..34885 (348..436) + 407
39075..39022 (910..927) - 74
42120..41635 (579..740) - 357
42243..42094 (517..566) - 59
42360..42232 (476..518) - 64
42749..42600 (342..391) - 156
43222..42770 (151..301) - 280
43201..43269 (51..73) + 85
43446..43508 (445..465) + 62
43507..43866 (466..585) + 477
43855..44793 (587..899) + 1240
44758..44874 (889..927) + 105
57209..57274 (899..920) + 58
121011..120577 (584..728) - 309
121400..121188 (364..434) - 77
122045..121890 (233..284) - 87
122406..122047 (113..232) - 256
123731..123943 (364..434) + 87
124168..124533 (607..728) + 297


gi|4557068|gb|AAD22507.1|AC007045_7[fasta] (AC007045) putative pol polyprotein [Arabidopsis thaliana]
Length 976 aa

position (link: detail on the area) subject position direction score

37494..37255 (893..972) - 224
37820..37566 (781..865) - 409
39577..39308 (685..774) - 440
39875..39648 (606..681) - 323
40060..39857 (544..611) - 316
40152..40081 (514..537) - 72
40460..40254 (431..499) - 314
40639..40463 (371..429) - 238
40740..40639 (337..370) - 143
40927..40838 (50..79) - 136
41160..41068 (3..33) - 77
99011..99646 (79..290) + 503
99718..99804 (316..344) + 52


gi|4263545|gb|AAD15359|[fasta] (AC006250) putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
Length 532 aa

position (link: detail on the area) subject position direction score

13818..13636 (371..431) - 149
15050..14937 (280..317) - 82
15275..15072 (220..287) - 155
15535..15368 (152..207) - 117
17454..17621 (152..207) + 315
17715..17918 (220..287) + 144
17940..18053 (280..317) + 81
33209..33475 (10..98) + 357
33525..33749 (101..175) + 301
33752..33883 (177..220) + 168
33879..34139 (201..287) + 302
34143..34439 (274..372) + 329
39075..39025 (474..490) - 70
41835..41671 (371..425) - 166
42931..42818 (281..318) - 79
43156..42956 (221..287) - 159
44119..44280 (372..425) + 236
44675..44806 (424..467) + 137
44803..44871 (468..490) + 103
70228..70341 (491..528) + 64
70421..70290 (489..532) - 119
120741..120544 (371..436) - 162
122229..121924 (220..321) - 149
122490..122323 (152..207) - 107
124369..124551 (371..431) + 156


gi|4388724|gb|AAD19762|[fasta] (AC006413) putative Athila ORF1 protein [Arabidopsis thaliana]
Length 616 aa

position (link: detail on the area) subject position direction score

14447..14235 (384..454) - 81
15320..15102 (181..253) - 145
15511..15314 (117..182) - 139
17478..17888 (117..253) + 226
33326..33475 (1..50) + 204
33510..33641 (60..103) + 181
33752..33844 (134..164) + 120
33840..34109 (164..253) + 386
34228..34323 (254..285) + 109
34359..34508 (284..333) + 169
34512..34613 (332..365) + 144
34619..34885 (368..456) + 379
42303..42100 (510..577) - 64
42360..42232 (489..531) - 65
42761..42600 (358..411) - 147
43222..42983 (175..254) - 192
43510..43866 (480..598) + 461
43855..43905 (600..616) + 69
122466..122017 (117..266) - 274
123731..123943 (384..454) + 90


gi|4263654|gb|AAD15376|[fasta] (AC006136) putative reverse transcriptase [Arabidopsis thaliana]
Length 962 aa

position (link: detail on the area) subject position direction score

13800..13663 (513..558) - 122
15047..14937 (163..199) - 79
15535..15353 (92..152) - 138
17454..17630 (92..150) + 93
17943..18053 (163..199) + 78
33326..33400 (1..25) + 94
33492..33749 (30..115) + 329
33752..33844 (117..147) + 126
34128..34463 (151..262) + 390
34444..34614 (256..312) + 186
34619..34726 (313..348) + 107
34767..34823 (337..355) + 70
34826..34885 (357..376) + 108
39075..39016 (681..700) - 68
39785..39672 (883..920) - 58
41814..41641 (514..571) - 165
42752..42624 (306..348) - 85
42958..42770 (154..216) - 82
43213..43281 (24..46) + 65
43675..43866 (400..463) + 243
43855..43974 (465..504) + 150
44134..44415 (513..606) + 310
44384..44509 (593..634) + 153
44675..44794 (633..672) + 132
44803..44874 (675..698) + 92
45097..45210 (702..739) + 170
120723..120577 (513..561) - 132
122015..121890 (158..199) - 73
122490..122314 (92..150) - 134
124387..124533 (513..561) + 137


show all (56) hits

   gi|4388825|gb|AAD19780|
   gi|4263654|gb|AAD15376|
   gi|4309705|gb|AAD15489|
   gi|4567293|gb|AAD23705.1|AC006918_3
   gi|4567294|gb|AAD23706.1|AC006918_4
   gi|4388724|gb|AAD19762|
   gi|4263543|gb|AAD15357|
   gi|4325357|gb|AAD17354|
   gi|4263544|gb|AAD15358|
   gi|3695399
   gi|3319360
   gi|2522227|dbj|BAA22786|
   gi|3047067
   gi|3319352
   gi|2522230|dbj|BAA22788|
   gi|3047073
   gi|4567293|gb|AAD23705.1|AC006918_3
   gi|4378066|gb|AAD19359|
   gi|2129618|pir||S66306
   gi|4263543|gb|AAD15357|
   gi|4115365
   gi|4388721|gb|AAD19759|
   gi|4263541|gb|AAD15355|
   gi|4309767|gb|AAD15536|
   gi|2995405|emb|CAA73042|
   gi|4325357|gb|AAD17354|
   gi|4263831|gb|AAD15474|
   gi|4417306|gb|AAD20430|
   gi|522302
   gi|1666236
   gi|4432807|gb|AAD20658|
   gi|2791289|emb|CAA04050|
   gi|3810595
   gi|3327397
   gi|4309768|gb|AAD15537|
   gi|4567294|gb|AAD23706.1|AC006918_4
   gi|1666236
   gi|4539021|emb|CAB39733.1|
   gi|4406792|gb|AAD20101|
   gi|84801|pir||S08405
   gi|2832245
   gi|85056|pir||S02021
   gi|4263831|gb|AAD15474|
   gi|1402848
   gi|2133292|pir||S60179
   gi|4263544|gb|AAD15358|
   gi|3510505
   gi|3319352
   gi|3319351
   gi|3695399
   gi|4544372|gb|AAD22283.1|AC006920_7

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