BLASTX alignment cluster 12    (33209..45210)

Local alignments in this cluster

gi|3377816[fasta] (AF076275) contains similarity to Arabidopsis thaliana retrotransposon Athila (GB:X81801) [Arabidopsis thaliana]
Length 940 aa
position (link: detail on the area) subject position direction score
13989..13666 (617..724) - 260
14447..14235 (364..434) - 78
15302..14937 (163..284) - 258
15451..15305 (113..161) - 108
17538..18053 (113..284) + 214
33326..33475 (1..50) + 210
33459..33629 (50..106) + 182
33752..33844 (110..140) + 133
33840..34439 (140..339) + 835
34619..34885 (348..436) + 407
39075..39022 (910..927) - 74
42120..41635 (579..740) - 357
42243..42094 (517..566) - 59
42360..42232 (476..518) - 64
42749..42600 (342..391) - 156
43222..42770 (151..301) - 280
43201..43269 (51..73) + 85
43446..43508 (445..465) + 62
43507..43866 (466..585) + 477
43855..44793 (587..899) + 1240
44758..44874 (889..927) + 105
57209..57274 (899..920) + 58
121011..120577 (584..728) - 309
121400..121188 (364..434) - 77
122045..121890 (233..284) - 87
122406..122047 (113..232) - 256
123731..123943 (364..434) + 87
124168..124533 (607..728) + 297

gi|4557068|gb|AAD22507.1|AC007045_7[fasta] (AC007045) putative pol polyprotein [Arabidopsis thaliana]
Length 976 aa
position (link: detail on the area) subject position direction score
37494..37255 (893..972) - 224
37820..37566 (781..865) - 409
39577..39308 (685..774) - 440
39875..39648 (606..681) - 323
40060..39857 (544..611) - 316
40152..40081 (514..537) - 72
40460..40254 (431..499) - 314
40639..40463 (371..429) - 238
40740..40639 (337..370) - 143
40927..40838 (50..79) - 136
41160..41068 (3..33) - 77
99011..99646 (79..290) + 503
99718..99804 (316..344) + 52

gi|4263545|gb|AAD15359|[fasta] (AC006250) putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
Length 532 aa
position (link: detail on the area) subject position direction score
13818..13636 (371..431) - 149
15050..14937 (280..317) - 82
15275..15072 (220..287) - 155
15535..15368 (152..207) - 117
17454..17621 (152..207) + 315
17715..17918 (220..287) + 144
17940..18053 (280..317) + 81
33209..33475 (10..98) + 357
33525..33749 (101..175) + 301
33752..33883 (177..220) + 168
33879..34139 (201..287) + 302
34143..34439 (274..372) + 329
39075..39025 (474..490) - 70
41835..41671 (371..425) - 166
42931..42818 (281..318) - 79
43156..42956 (221..287) - 159
44119..44280 (372..425) + 236
44675..44806 (424..467) + 137
44803..44871 (468..490) + 103
70228..70341 (491..528) + 64
70421..70290 (489..532) - 119
120741..120544 (371..436) - 162
122229..121924 (220..321) - 149
122490..122323 (152..207) - 107
124369..124551 (371..431) + 156

gi|4388724|gb|AAD19762|[fasta] (AC006413) putative Athila ORF1 protein [Arabidopsis thaliana]
Length 616 aa
position (link: detail on the area) subject position direction score
14447..14235 (384..454) - 81
15320..15102 (181..253) - 145
15511..15314 (117..182) - 139
17478..17888 (117..253) + 226
33326..33475 (1..50) + 204
33510..33641 (60..103) + 181
33752..33844 (134..164) + 120
33840..34109 (164..253) + 386
34228..34323 (254..285) + 109
34359..34508 (284..333) + 169
34512..34613 (332..365) + 144
34619..34885 (368..456) + 379
42303..42100 (510..577) - 64
42360..42232 (489..531) - 65
42761..42600 (358..411) - 147
43222..42983 (175..254) - 192
43510..43866 (480..598) + 461
43855..43905 (600..616) + 69
122466..122017 (117..266) - 274
123731..123943 (384..454) + 90

gi|4263654|gb|AAD15376|[fasta] (AC006136) putative reverse transcriptase [Arabidopsis thaliana]
Length 962 aa
position (link: detail on the area) subject position direction score
13800..13663 (513..558) - 122
15047..14937 (163..199) - 79
15535..15353 (92..152) - 138
17454..17630 (92..150) + 93
17943..18053 (163..199) + 78
33326..33400 (1..25) + 94
33492..33749 (30..115) + 329
33752..33844 (117..147) + 126
34128..34463 (151..262) + 390
34444..34614 (256..312) + 186
34619..34726 (313..348) + 107
34767..34823 (337..355) + 70
34826..34885 (357..376) + 108
39075..39016 (681..700) - 68
39785..39672 (883..920) - 58
41814..41641 (514..571) - 165
42752..42624 (306..348) - 85
42958..42770 (154..216) - 82
43213..43281 (24..46) + 65
43675..43866 (400..463) + 243
43855..43974 (465..504) + 150
44134..44415 (513..606) + 310
44384..44509 (593..634) + 153
44675..44794 (633..672) + 132
44803..44874 (675..698) + 92
45097..45210 (702..739) + 170
120723..120577 (513..561) - 132
122015..121890 (158..199) - 73
122490..122314 (92..150) - 134
124387..124533 (513..561) + 137

gi|4388825|gb|AAD19780|[fasta] (AC006528) putative pol polyprotein with reverse transcriptase domain (Pfam: PF00078) [Arabidopsis thaliana]
Length 841 aa
position (link: detail on the area) subject position direction score
13989..13663 (76..184) - 284
40394..40287 (795..830) - 108
40740..40639 (729..762) - 108
41154..40786 (367..489) - 414
41408..41163 (282..363) - 233
42075..41602 (53..210) - 344
43918..44310 (67..197) + 281
98960..99112 (510..560) + 113
99296..99610 (594..698) + 107
120957..120577 (61..187) - 317
124153..124533 (61..187) + 335
124543..124623 (190..216) + 42

gi|4263654|gb|AAD15376|[fasta] (AC006136) putative reverse transcriptase [Arabidopsis thaliana]
Length 962 aa
position (link: detail on the area) subject position direction score
13800..13663 (513..558) - 122
15047..14937 (163..199) - 79
15535..15353 (92..152) - 138
17454..17630 (92..150) + 93
17943..18053 (163..199) + 78
33326..33400 (1..25) + 94
33492..33749 (30..115) + 329
33752..33844 (117..147) + 126
34128..34463 (151..262) + 390
34444..34614 (256..312) + 186
34619..34726 (313..348) + 107
34767..34823 (337..355) + 70
34826..34885 (357..376) + 108
39075..39016 (681..700) - 68
39785..39672 (883..920) - 58
41814..41641 (514..571) - 165
42752..42624 (306..348) - 85
42958..42770 (154..216) - 82
43213..43281 (24..46) + 65
43675..43866 (400..463) + 243
43855..43974 (465..504) + 150
44134..44415 (513..606) + 310
44384..44509 (593..634) + 153
44675..44794 (633..672) + 132
44803..44874 (675..698) + 92
45097..45210 (702..739) + 170
120723..120577 (513..561) - 132
122015..121890 (158..199) - 73
122490..122314 (92..150) - 134
124387..124533 (513..561) + 137

gi|4309705|gb|AAD15489|[fasta] (AC006266) putative Athila-like protein [Arabidopsis thaliana]
Length 285 aa
position (link: detail on the area) subject position direction score
13962..13663 (6..105) - 251
41979..41641 (6..118) - 346
43957..44805 (1..283) + 295
120885..120577 (6..108) - 246
124225..124533 (6..108) + 259

gi|4567293|gb|AAD23705.1|AC006918_3[fasta] (AC006918) putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
Length 333 aa
position (link: detail on the area) subject position direction score
14447..14232 (200..271) - 78
15191..14937 (4..88) - 173
17799..18053 (4..88) + 103
34017..34439 (3..143) + 514
34503..34676 (145..202) + 137
34619..34879 (184..270) + 337
42761..42600 (174..227) - 167
43078..42770 (3..105) - 175
43309..43232 (307..332) - 65
43446..43511 (277..298) + 61
121400..121185 (200..271) - 78
122045..121890 (37..88) - 86
122145..122047 (4..36) - 86
123731..123946 (200..271) + 87

gi|4567294|gb|AAD23706.1|AC006918_4[fasta] (AC006918) putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
Length 733 aa
position (link: detail on the area) subject position direction score
13842..13636 (508..576) - 229
14471..14265 (305..373) - 222
14966..14793 (158..215) - 188
15305..15141 (103..157) - 245
15580..15245 (11..122) - 373
17409..17849 (11..157) + 97
18024..18194 (158..214) + 181
18519..18725 (305..373) + 190
33678..33749 (26..49) + 56
33770..33844 (57..81) + 39
33840..34067 (81..156) + 148
41166..41023 (686..733) - 161
41402..41166 (607..685) - 261
41859..41668 (508..571) - 183
43180..43025 (106..157) - 95
44092..44280 (508..570) + 182
120765..120559 (508..576) - 243
121541..121218 (266..373) - 319
121919..121746 (158..215) - 197
122514..122095 (18..157) - 591
123707..123913 (305..373) + 202
124345..124551 (508..576) + 253

gi|4388724|gb|AAD19762|[fasta] (AC006413) putative Athila ORF1 protein [Arabidopsis thaliana]
Length 616 aa
position (link: detail on the area) subject position direction score
14447..14235 (384..454) - 81
15320..15102 (181..253) - 145
15511..15314 (117..182) - 139
17478..17888 (117..253) + 226
33326..33475 (1..50) + 204
33510..33641 (60..103) + 181
33752..33844 (134..164) + 120
33840..34109 (164..253) + 386
34228..34323 (254..285) + 109
34359..34508 (284..333) + 169
34512..34613 (332..365) + 144
34619..34885 (368..456) + 379
42303..42100 (510..577) - 64
42360..42232 (489..531) - 65
42761..42600 (358..411) - 147
43222..42983 (175..254) - 192
43510..43866 (480..598) + 461
43855..43905 (600..616) + 69
122466..122017 (117..266) - 274
123731..123943 (384..454) + 90

gi|4263543|gb|AAD15357|[fasta] (AC006250) putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
Length 929 aa
position (link: detail on the area) subject position direction score
12898..12803 (880..911) - 62
13432..13340 (810..840) - 80
13968..13609 (586..705) - 407
14471..14190 (391..484) - 215
15305..14760 (135..316) - 693
15586..15287 (41..140) - 396
17403..18230 (41..316) + 402
18378..18413 (344..355) + 60
18519..18800 (391..484) + 185
19067..19186 (681..720) + 92
19319..19453 (810..854) + 67
33840..34274 (113..257) + 297
41667..41599 (693..715) - 58
41979..41665 (588..692) - 287
43180..42788 (138..268) - 185
43972..44280 (588..690) + 274
120891..120487 (586..720) - 408
121565..121182 (344..471) - 344
122045..121701 (206..320) - 393
122514..122047 (50..205) - 677
123707..123961 (391..475) + 189
124219..124623 (586..720) + 445
124756..124848 (810..840) + 67

gi|4325357|gb|AAD17354|[fasta] (AF128395) contains similarity to Arabidopsis thaliana retrotransposon Athila hypothetical protein 1 (GB:X81801) [Arabidopsis thaliana]
Length 446 aa
position (link: detail on the area) subject position direction score
13621..13517 (412..446) - 93
13989..13615 (289..413) - 537
14090..13977 (252..289) - 143
14186..14070 (215..253) - 178
15305..14991 (111..215) - 493
15634..15290 (1..115) - 539
17364..17999 (4..215) + 91
18812..19069 (217..302) + 383
19073..19234 (393..446) + 132
33840..34190 (89..205) + 220
42042..41671 (277..400) - 262
43222..42884 (100..212) - 142
43915..44280 (279..400) + 319
121128..120439 (217..446) - 944
122060..121944 (177..215) - 151
122514..122047 (26..181) - 747
123994..124098 (216..250) + 163
124087..124671 (252..446) + 780

gi|4263544|gb|AAD15358|[fasta] (AC006250) putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
Length 1303 aa
position (link: detail on the area) subject position direction score
10962..10390 (996..1186) - 233
11635..11390 (850..931) - 127
12907..12803 (631..665) - 126
13989..13648 (436..549) - 343
14303..14220 (258..285) - 77
15062..14886 (163..221) - 211
15214..15074 (117..163) - 87
15583..15368 (42..113) - 300
17406..17621 (42..113) + 343
17776..17916 (117..163) + 69
17928..18104 (163..221) + 212
18069..18230 (196..249) + 66
18687..18770 (258..285) + 68
18890..19069 (390..449) + 134
19211..19345 (567..611) + 60
19847..19948 (632..665) + 117
21035..21301 (843..931) + 137
21553..21717 (932..986) + 78
21736..21981 (996..1077) + 140
22068..22307 (1107..1186) + 89
33678..33755 (58..83) + 63
34131..34274 (157..204) + 89
42054..41656 (420..552) - 313
43915..44364 (426..575) + 336
118021..117659 (932..1052) - 169
118528..118313 (845..916) - 126
119828..119724 (631..665) - 119
121023..120571 (399..549) - 438
121256..121182 (258..282) - 79
121895..121695 (189..255) - 121
122015..121839 (163..221) - 208
122523..122323 (47..113) - 294
123878..123964 (259..287) + 69
124087..124539 (399..549) + 428
124648..124782 (567..611) + 66

gi|3695399[fasta] (AF096372) contains similarity to Arabidopsis thaliana retrotransposon Athila (GB:X81801) [Arabidopsis thaliana]
Length 1064 aa
position (link: detail on the area) subject position direction score
10578..10402 (834..892) - 127
11262..11044 (712..784) - 105
12907..12845 (580..600) - 76
13989..13639 (416..532) - 343
14090..13977 (379..416) - 61
14309..14229 (236..262) - 96
14471..14322 (183..232) - 165
15580..15233 (11..126) - 418
17409..17741 (11..121) + 118
18519..18668 (183..232) + 141
18681..18761 (236..262) + 87
18890..19060 (370..426) + 129
19718..19789 (536..559) + 60
19847..19906 (581..600) + 67
21439..21666 (713..788) + 144
22119..22295 (834..892) + 97
33669..33749 (23..49) + 58
33770..33844 (57..81) + 44
33840..33941 (81..114) + 73
42042..41668 (404..528) - 302
42198..42103 (350..381) - 48
42352..42305 (321..336) - 43
43915..44280 (406..527) + 313
118141..117920 (711..784) - 110
119828..119766 (580..600) - 65
121050..120562 (370..532) - 446
121262..121182 (236..262) - 94
121535..121275 (146..232) - 268
122514..122203 (18..121) - 423
123707..123856 (183..232) + 167
123878..123949 (239..262) + 75
124087..124548 (379..532) + 429

gi|3319360[fasta] (AF077408) contains similarity to Vicia faba retrotransposon-like gene (GB:AB007467) [Arabidopsis thaliana]
Length 1120 aa
position (link: detail on the area) subject position direction score
10578..10402 (945..1003) - 109
11394..10981 (764..901) - 251
11635..11537 (720..752) - 61
11806..11708 (668..700) - 62
12904..12845 (402..421) - 70
13989..13594 (196..327) - 375
14471..14322 (13..62) - 160
18519..18668 (13..62) + 81
18890..19069 (150..209) + 128
19067..19132 (298..319) + 61
19682..19789 (345..380) + 65
19847..19906 (402..421) + 62
20912..20983 (677..700) + 60
21035..21154 (713..752) + 67
21305..21460 (764..815) + 117
21439..21717 (809..901) + 189
22119..22295 (945..1003) + 78
42042..41668 (184..308) - 294
42198..42103 (130..161) - 42
43915..44280 (186..307) + 318
118273..117851 (763..903) - 227
118519..118415 (718..752) - 71
119825..119703 (402..442) - 60
121050..120526 (150..324) - 473
121460..121275 (1..62) - 198
123707..123856 (13..62) + 162
124123..124608 (171..332) + 453

gi|2522227|dbj|BAA22786|[fasta] (AB007466) retrotransposon-like gene; the first amino acid was determined to be glycine [Vicia faba]
Length 298 aa
position (link: detail on the area) subject position direction score
13989..13663 (5..113) - 216
41351..41163 (221..283) - 118
42018..41629 (1..130) - 222
43933..44298 (1..122) + 84
120924..120577 (1..116) - 219
124186..124533 (1..116) + 253

gi|3047067[fasta] (AF058825) similar to Arabidopsis thaliana retrotransposon Athila (GB:X81801) [Arabidopsis thaliana]
Length 360 aa
position (link: detail on the area) subject position direction score
13989..13618 (206..329) - 367
14309..14220 (26..55) - 102
14384..14322 (2..22) - 74
18606..18668 (2..22) + 192
18681..18770 (26..55) + 93
18890..19069 (160..219) + 125
19067..19132 (308..329) + 60
42042..41668 (194..318) - 288
42198..42103 (140..171) - 40
42352..42305 (111..126) - 43
43915..44280 (196..317) + 301
121050..120523 (160..335) - 472
121262..121182 (26..52) - 94
121337..121275 (2..22) - 79
123794..123856 (2..22) + 79
123878..123961 (29..56) + 82
124123..124602 (181..340) + 447

gi|3319352[fasta] (AF077407) No definition line found [Arabidopsis thaliana]
Length 850 aa
position (link: detail on the area) subject position direction score
13989..13666 (552..659) - 217
14465..14364 (320..353) - 64
14705..14652 (244..261) - 81
15068..14805 (120..207) - 258
15571..15314 (32..117) - 283
17418..17675 (32..117) + 249
17922..18185 (120..207) + 254
18288..18338 (245..261) + 69
33770..33844 (75..99) + 58
34149..34274 (122..163) + 81
42033..41677 (543..661) - 184
42662..42528 (333..377) - 81
43918..44274 (543..661) + 225
120939..120583 (543..661) - 253
121451..121326 (309..350) - 76
121658..121608 (244..260) - 65
122021..121758 (120..207) - 254
122514..122278 (36..114) - 291
123713..123805 (320..350) + 61
124171..124527 (543..661) + 264

gi|2522230|dbj|BAA22788|[fasta] (AB007467) retrotransposon-like gene; the first amino acid was determined to be leucine [Vicia faba]
Length 238 aa
position (link: detail on the area) subject position direction score
13983..13666 (88..193) - 200
42045..41629 (73..211) - 236
43918..44316 (77..209) + 174
121086..120577 (28..197) - 223
124162..124533 (74..197) + 250

gi|3047073[fasta] (AF058825) contains similarity to retrotransposon-like proteins [Arabidopsis thaliana]
Length 589 aa
position (link: detail on the area) subject position direction score
13173..13090 (562..589) - 81
13576..13163 (438..575) - 548
13989..13648 (333..446) - 471
14039..13977 (313..333) - 80
14516..14280 (241..319) - 266
14705..14598 (178..213) - 193
14854..14759 (129..160) - 149
15634..15227 (1..136) - 548
17364..17750 (4..132) + 140
18139..18228 (130..159) + 122
18288..18692 (179..313) + 459
18968..19096 (313..355) + 168
19175..19546 (438..561) + 534
33678..33749 (34..57) + 57
33840..33965 (89..130) + 69
34667..34783 (264..302) + 68
42042..41671 (321..444) - 222
43915..44280 (323..444) + 273
99089..99175 (506..534) + 59
120058..120011 (574..589) - 82
120248..120126 (521..561) - 184
120492..120253 (440..519) - 322
120972..120571 (313..446) - 572
121721..121233 (157..319) - 628
121807..121718 (129..158) - 127
122514..122194 (26..132) - 548
123662..123898 (241..319) + 259
124138..124539 (313..446) + 564
124612..124983 (438..561) + 504
125024..125098 (565..589) + 79

gi|4567293|gb|AAD23705.1|AC006918_3[fasta] (AC006918) putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
Length 333 aa
position (link: detail on the area) subject position direction score
14447..14232 (200..271) - 78
15191..14937 (4..88) - 173
17799..18053 (4..88) + 103
34017..34439 (3..143) + 514
34503..34676 (145..202) + 137
34619..34879 (184..270) + 337
42761..42600 (174..227) - 167
43078..42770 (3..105) - 175
43309..43232 (307..332) - 65
43446..43511 (277..298) + 61
121400..121185 (200..271) - 78
122045..121890 (37..88) - 86
122145..122047 (4..36) - 86
123731..123946 (200..271) + 87

gi|4378066|gb|AAD19359|[fasta] (AF098806) polyprotein [Sorghum bicolor]
Length 1877 aa
position (link: detail on the area) subject position direction score
22527..22598 (40..63) + 114
39271..39197 (1832..1856) - 48
39418..39302 (1784..1822) - 61
39631..39476 (1719..1770) - 94
39848..39663 (1646..1707) - 99
39934..39887 (1617..1632) - 48
40078..39947 (1568..1611) - 47
40304..40074 (1493..1569) - 106
94963..95313 (184..300) + 130
98329..98484 (651..702) + 104
98515..98721 (717..785) + 105
98821..98958 (816..861) + 72
98960..99397 (995..1140) + 391
99389..99553 (1137..1191) + 111
99631..99852 (1222..1295) + 186
99886..100059 (1308..1365) + 100
100370..100804 (1471..1615) + 224
100817..101050 (1618..1695) + 151
101092..101256 (1713..1767) + 88
101467..101544 (1830..1855) + 60
115217..115366 (1091..1140) + 95
115393..115521 (1149..1191) + 82
115537..115647 (1201..1237) + 67

gi|2129618|pir||S66306[fasta] hypothetical protein 1 - Arabidopsis thaliana retrotransposon Athila
gi|806535|emb|CAA57397| (X81801) Athila ORF 1 [Arabidopsis thaliana]
Length 935 aa
position (link: detail on the area) subject position direction score
12907..12803 (882..916) - 115
13441..13238 (823..890) - 85
13989..13579 (652..788) - 402
14471..14169 (418..518) - 235
14651..14613 (356..368) - 59
15305..14640 (135..356) - 795
15586..15245 (41..154) - 407
15724..15677 (11..26) - 53
17403..18350 (41..356) + 965
18378..18413 (371..382) + 60
18519..18812 (418..515) + 205
18890..19069 (606..665) + 127
19067..19132 (754..775) + 61
19310..19513 (823..890) + 82
19847..19948 (883..916) + 103
33669..33749 (55..81) + 64
33840..34274 (113..257) + 301
42042..41668 (640..764) - 312
43180..42788 (138..268) - 199
43915..44280 (642..763) + 321
94957..95262 (93..194) + 77
119726..119658 (912..934) - 48
119828..119724 (882..916) - 116
119999..119874 (823..864) - 42
121050..120541 (606..775) - 489
121565..121131 (371..515) - 367
122096..121602 (189..353) - 488
122514..122047 (50..205) - 694
122807..122917 (793..829) + 61
123707..124000 (418..515) + 202
124153..124632 (637..796) + 483
124747..124872 (823..864) + 67

gi|4263543|gb|AAD15357|[fasta] (AC006250) putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
Length 929 aa
position (link: detail on the area) subject position direction score
12898..12803 (880..911) - 62
13432..13340 (810..840) - 80
13968..13609 (586..705) - 407
14471..14190 (391..484) - 215
15305..14760 (135..316) - 693
15586..15287 (41..140) - 396
17403..18230 (41..316) + 402
18378..18413 (344..355) + 60
18519..18800 (391..484) + 185
19067..19186 (681..720) + 92
19319..19453 (810..854) + 67
33840..34274 (113..257) + 297
41667..41599 (693..715) - 58
41979..41665 (588..692) - 287
43180..42788 (138..268) - 185
43972..44280 (588..690) + 274
120891..120487 (586..720) - 408
121565..121182 (344..471) - 344
122045..121701 (206..320) - 393
122514..122047 (50..205) - 677
123707..123961 (391..475) + 189
124219..124623 (586..720) + 445
124756..124848 (810..840) + 67

gi|4115365[fasta] (AC005957) reverse transcriptase-like protein [Arabidopsis thaliana]
Length 1329 aa
position (link: detail on the area) subject position direction score
39652..39476 (1156..1214) - 91
39830..39663 (1097..1152) - 77
40256..40086 (968..1024) - 63
40923..40789 (484..528) - 107
94675..95235 (89..275) + 152
98449..98637 (348..410) + 203
98960..98998 (550..562) + 64
99395..99586 (627..690) + 200
99631..99825 (699..763) + 245
100092..100220 (821..863) + 106
100370..100798 (930..1072) + 423
100844..101053 (1072..1141) + 239
101056..101553 (1145..1310) + 481
115333..115554 (617..690) + 115
115585..115647 (694..714) + 75
122385..122191 (183..247) - 59

gi|4388721|gb|AAD19759|[fasta] (AC006413) putative Athila retroelement ORF 1 protein [Arabidopsis thaliana]
Length 750 aa
position (link: detail on the area) subject position direction score
13989..13579 (613..749) - 374
14390..14169 (406..479) - 141
15305..14631 (103..327) - 795
15586..15287 (9..108) - 380
17403..18344 (9..322) + 59
18372..18413 (336..349) + 60
18597..18830 (405..482) + 124
18890..19069 (567..626) + 124
33840..34274 (81..225) + 273
42042..41668 (601..725) - 297
43180..42788 (106..236) - 179
43915..44280 (603..724) + 315
95080..95262 (102..162) + 68
121050..120520 (567..743) - 478
121343..121188 (406..457) - 131
121571..121368 (336..403) - 188
122096..121584 (157..327) - 497
122517..122047 (17..173) - 680
123788..124000 (406..476) + 120
124153..124611 (598..750) + 450

gi|4263541|gb|AAD15355|[fasta] (AC006250) putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
Length 277 aa
position (link: detail on the area) subject position direction score
15305..14937 (155..277) - 625
15712..15245 (19..174) - 691
15757..15659 (1..33) - 86
17231..17293 (1..21) + 131
17276..17371 (19..50) + 133
17364..18053 (48..277) + 1136
33678..33749 (78..101) + 59
33785..33817 (114..124) + 36
33840..34274 (133..277) + 271
43180..42821 (158..277) - 173
122096..121890 (209..277) - 246
122514..122047 (70..225) - 797

gi|4309767|gb|AAD15536|[fasta] (AC006217) putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
Length 1012 aa
position (link: detail on the area) subject position direction score
11647..11396 (910..993) - 137
13102..12788 (682..786) - 262
13755..13609 (592..640) - 151
13989..13915 (572..596) - 82
14471..14265 (367..435) - 226
14651..14598 (316..333) - 63
14705..14634 (296..319) - 98
15068..14760 (174..276) - 353
15305..15114 (98..161) - 288
15574..15290 (8..102) - 417
17415..17876 (8..161) + 176
17922..18230 (174..276) + 309
18288..18356 (297..319) + 86
18339..18401 (316..336) + 64
18519..18725 (367..435) + 197
18980..19069 (556..585) + 105
19076..19132 (619..637) + 59
19625..19972 (674..789) + 299
21044..21289 (910..991) + 146
33840..34097 (76..161) + 169
34149..34274 (176..217) + 81
34667..34783 (375..413) + 63
41766..41668 (594..626) - 107
42042..41929 (560..597) - 85
43156..42998 (109..161) - 114
43915..44019 (562..596) + 100
44182..44280 (593..625) + 96
118546..118217 (903..1012) - 370
119999..119706 (690..787) - 272
120678..120505 (592..649) - 174
120960..120838 (556..596) - 150
121538..121218 (329..435) - 294
121658..121602 (296..314) - 79
122021..121695 (174..282) - 368
122514..122068 (13..161) - 674
123707..123913 (367..435) + 209
124150..124272 (556..596) + 150
124432..124635 (592..659) + 175
125086..125403 (682..787) + 174

gi|2995405|emb|CAA73042|[fasta] (Y12432) polyprotein [Ananas comosus]
Length 871 aa
position (link: detail on the area) subject position direction score
39619..39509 (720..756) - 72
39815..39651 (655..709) - 72
40923..40789 (68..112) - 89
98960..99556 (134..332) + 42
100883..101050 (638..693) + 67

gi|4325357|gb|AAD17354|[fasta] (AF128395) contains similarity to Arabidopsis thaliana retrotransposon Athila hypothetical protein 1 (GB:X81801) [Arabidopsis thaliana]
Length 446 aa
position (link: detail on the area) subject position direction score
13621..13517 (412..446) - 93
13989..13615 (289..413) - 537
14090..13977 (252..289) - 143
14186..14070 (215..253) - 178
15305..14991 (111..215) - 493
15634..15290 (1..115) - 539
17364..17999 (4..215) + 91
18812..19069 (217..302) + 383
19073..19234 (393..446) + 132
33840..34190 (89..205) + 220
42042..41671 (277..400) - 262
43222..42884 (100..212) - 142
43915..44280 (279..400) + 319
121128..120439 (217..446) - 944
122060..121944 (177..215) - 151
122514..122047 (26..181) - 747
123994..124098 (216..250) + 163
124087..124671 (252..446) + 780

gi|4263831|gb|AAD15474|[fasta] (AC006067) putative reverse transcriptase [Arabidopsis thaliana]
Length 1466 aa
position (link: detail on the area) subject position direction score
17553..17753 (168..234) + 137
33846..34067 (192..265) + 93
39652..39503 (1113..1162) - 102
40923..40789 (516..560) - 104
43936..44049 (426..463) + 59
94780..95313 (111..288) + 369
98150..98329 (380..439) + 89
98329..98424 (440..471) + 70
98960..99586 (582..790) + 786
100092..100214 (824..864) + 126
100484..100798 (953..1057) + 331
100823..100870 (1064..1079) + 64
101056..101544 (1102..1264) + 504
114584..114631 (309..324) + 68
114641..114757 (326..364) + 72
115147..115254 (655..690) + 115
115217..115378 (678..731) + 177
115378..115554 (732..790) + 192
122391..122095 (168..266) - 82

gi|4417306|gb|AAD20430|[fasta] (AC006446) putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
Length 622 aa
position (link: detail on the area) subject position direction score
13989..13909 (423..449) - 71
14465..14364 (214..247) - 64
15305..15081 (121..195) - 297
15571..15287 (32..126) - 305
17418..17909 (32..195) + 48
33770..33844 (75..99) + 61
33840..34121 (99..192) + 197
34778..34882 (251..285) + 65
42033..41935 (414..446) - 70
42662..42528 (227..271) - 78
43222..42974 (110..192) - 136
43915..44016 (413..446) + 94
120945..120832 (412..449) - 123
121451..121326 (203..244) - 76
122514..122029 (36..197) - 588
124165..124278 (412..449) + 122

gi|522302[fasta] (L35053) endonuclease [Magnaporthe grisea]
Length 1199 aa
position (link: detail on the area) subject position direction score
39845..39651 (885..949) - 92
40929..40789 (291..337) - 95
98972..99565 (363..560) + 71
100931..101050 (894..933) + 66

gi|1666236[fasta] (U76261) unknown [Hordeum vulgare]
Length 337 aa
position (link: detail on the area) subject position direction score
15299..14976 (98..205) - 194
15523..15284 (23..102) - 165
17466..18014 (23..205) + 89
33840..34235 (74..205) + 181
43222..42827 (85..216) - 142
122003..121929 (181..205) - 38
122478..122065 (23..160) - 297

gi|4432807|gb|AAD20658|[fasta] (AC006570) putative polyprotein [Arabidopsis thaliana]
Length 1611 aa
position (link: detail on the area) subject position direction score
39619..39509 (1357..1393) - 75
40923..40789 (710..754) - 93
70970..70899 (427..450) - 59
98966..99553 (778..973) + 266
100913..101050 (1285..1330) + 78

gi|2791289|emb|CAA04050|[fasta] (AJ000387) protease [Drosophila melanogaster]
Length 1217 aa
position (link: detail on the area) subject position direction score
39827..39654 (974..1031) - 76
40923..40789 (372..416) - 92
98960..99646 (438..666) + 75
99697..99798 (685..718) + 54
115168..115251 (518..545) + 72
115354..115650 (580..678) + 88

gi|3810595[fasta] (AC005398) putative reverse-transcriptase [Arabidopsis thaliana]
Length 1328 aa
position (link: detail on the area) subject position direction score
39388..39284 (1165..1199) - 48
39619..39422 (1100..1165) - 72
39848..39651 (1024..1089) - 82
39970..39857 (982..1019) - 45
98966..99550 (585..779) + 40
100919..101050 (1030..1073) + 68

gi|3327397[fasta] (AC004483) Athila retroelement ORF1-like protein [Arabidopsis thaliana]
Length 181 aa
position (link: detail on the area) subject position direction score
15215..15117 (114..146) - 142
15305..15264 (99..112) - 49
15370..15299 (77..100) - 87
15580..15446 (29..73) - 196
17409..17543 (29..73) + 123
17619..17726 (77..112) + 134
17775..17873 (114..146) + 134
33678..33749 (44..67) + 55
33840..33956 (77..115) + 72
33999..34094 (115..146) + 72
122169..122071 (114..146) - 139
122325..122218 (77..112) - 132
122520..122401 (34..73) - 160

gi|4309768|gb|AAD15537|[fasta] (AC006217) putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
Length 281 aa
position (link: detail on the area) subject position direction score
14651..14601 (214..230) - 68
14843..14640 (147..214) - 149
15215..14988 (71..146) - 315
15580..15395 (11..72) - 253
17409..17591 (11..71) + 45
17775..18002 (71..146) + 283
18147..18350 (147..214) + 125
18339..18413 (214..238) + 83
33999..34199 (72..138) + 149
121535..121410 (236..277) - 98
121655..121494 (197..250) - 123
121796..121608 (147..209) - 171
122060..121941 (107..146) - 149
122169..122047 (71..111) - 158
122514..122350 (18..72) - 230

gi|4567294|gb|AAD23706.1|AC006918_4[fasta] (AC006918) putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
Length 733 aa
position (link: detail on the area) subject position direction score
13842..13636 (508..576) - 229
14471..14265 (305..373) - 222
14966..14793 (158..215) - 188
15305..15141 (103..157) - 245
15580..15245 (11..122) - 373
17409..17849 (11..157) + 97
18024..18194 (158..214) + 181
18519..18725 (305..373) + 190
33678..33749 (26..49) + 56
33770..33844 (57..81) + 39
33840..34067 (81..156) + 148
41166..41023 (686..733) - 161
41402..41166 (607..685) - 261
41859..41668 (508..571) - 183
43180..43025 (106..157) - 95
44092..44280 (508..570) + 182
120765..120559 (508..576) - 243
121541..121218 (266..373) - 319
121919..121746 (158..215) - 197
122514..122095 (18..157) - 591
123707..123913 (305..373) + 202
124345..124551 (508..576) + 253

gi|1666236[fasta] (U76261) unknown [Hordeum vulgare]
Length 337 aa
position (link: detail on the area) subject position direction score
15299..14976 (98..205) - 194
15523..15284 (23..102) - 165
17466..18014 (23..205) + 89
33840..34235 (74..205) + 181
43222..42827 (85..216) - 142
122003..121929 (181..205) - 38
122478..122065 (23..160) - 297

gi|4539021|emb|CAB39733.1|[fasta] (AJ133521) protease, reverse transcriptase, ribonuclease H, integrase [Drosophila buzzatii]
Length 1147 aa
position (link: detail on the area) subject position direction score
39860..39699 (898..951) - 112
39934..39887 (873..888) - 43
40075..40046 (825..834) - 39
40112..40086 (813..821) - 36
40298..40125 (752..809) - 44
98966..99646 (415..641) + 432
99688..99804 (657..695) + 83
100628..100798 (813..869) + 89
100823..101050 (876..951) + 116

gi|4406792|gb|AAD20101|[fasta] (AC006304) putative reverse transcriptase [Arabidopsis thaliana]
Length 764 aa
position (link: detail on the area) subject position direction score
40923..40789 (549..593) - 103
41115..41020 (503..534) - 58
94780..94992 (96..166) + 156
97736..97810 (183..207) + 75
98108..98176 (288..310) + 57
98183..98329 (312..360) + 61
98329..98661 (361..471) + 262
98960..99400 (615..761) + 555
115150..115251 (689..722) + 100
115238..115357 (718..757) + 105

gi|84801|pir||S08405[fasta] hypothetical protein 2 - silkworm transposon mag
Length 1178 aa
position (link: detail on the area) subject position direction score
39595..39524 (945..968) - 38
39830..39681 (868..917) - 102
39922..39881 (838..851) - 47
98966..99034 (361..383) + 39
99056..99550 (389..553) + 204
99566..99646 (560..586) + 40
99748..99798 (627..643) + 53

gi|2832245[fasta] (AF031569) hypothetical protein [Zea mays]
Length 224 aa
position (link: detail on the area) subject position direction score
40063..39947 (184..222) - 56
40286..40095 (110..173) - 99
100370..100789 (82..221) + 60

gi|85056|pir||S02021[fasta] micropia polyprotein - fruit fly (Drosophila melanogaster) (fragment)
Length 1291 aa
position (link: detail on the area) subject position direction score
40923..40789 (508..552) - 93
41151..41044 (451..486) - 51
98975..99646 (568..791) + 200

gi|4263831|gb|AAD15474|[fasta] (AC006067) putative reverse transcriptase [Arabidopsis thaliana]
Length 1466 aa
position (link: detail on the area) subject position direction score
17553..17753 (168..234) + 137
33846..34067 (192..265) + 93
39652..39503 (1113..1162) - 102
40923..40789 (516..560) - 104
43936..44049 (426..463) + 59
94780..95313 (111..288) + 369
98150..98329 (380..439) + 89
98329..98424 (440..471) + 70
98960..99586 (582..790) + 786
100092..100214 (824..864) + 126
100484..100798 (953..1057) + 331
100823..100870 (1064..1079) + 64
101056..101544 (1102..1264) + 504
114584..114631 (309..324) + 68
114641..114757 (326..364) + 72
115147..115254 (655..690) + 115
115217..115378 (678..731) + 177
115378..115554 (732..790) + 192
122391..122095 (168..266) - 82

gi|1402848[fasta] (U60529) pol-like protein [Ceratitis capitata]
Length 1060 aa
position (link: detail on the area) subject position direction score
40926..40789 (250..295) - 91
41094..41044 (208..224) - 44
41262..41203 (148..167) - 40
98960..99397 (317..462) + 81
99452..99556 (493..527) + 41
99569..99646 (528..553) + 56
99712..99804 (578..608) + 44

gi|2133292|pir||S60179[fasta] pol polyprotein homolog - fungus (Fusarium oxysporum) retrotransposon skippy
gi|510697 (L34658) pol polyprotein [Fusarium oxysporum]
Length 1295 aa
position (link: detail on the area) subject position direction score
39457..39335 (1107..1147) - 41
39661..39530 (1051..1094) - 55
39815..39651 (1000..1054) - 90
98966..99565 (441..640) + 66
99548..99646 (636..668) + 47

gi|4263544|gb|AAD15358|[fasta] (AC006250) putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
Length 1303 aa
position (link: detail on the area) subject position direction score
10962..10390 (996..1186) - 233
11635..11390 (850..931) - 127
12907..12803 (631..665) - 126
13989..13648 (436..549) - 343
14303..14220 (258..285) - 77
15062..14886 (163..221) - 211
15214..15074 (117..163) - 87
15583..15368 (42..113) - 300
17406..17621 (42..113) + 343
17776..17916 (117..163) + 69
17928..18104 (163..221) + 212
18069..18230 (196..249) + 66
18687..18770 (258..285) + 68
18890..19069 (390..449) + 134
19211..19345 (567..611) + 60
19847..19948 (632..665) + 117
21035..21301 (843..931) + 137
21553..21717 (932..986) + 78
21736..21981 (996..1077) + 140
22068..22307 (1107..1186) + 89
33678..33755 (58..83) + 63
34131..34274 (157..204) + 89
42054..41656 (420..552) - 313
43915..44364 (426..575) + 336
118021..117659 (932..1052) - 169
118528..118313 (845..916) - 126
119828..119724 (631..665) - 119
121023..120571 (399..549) - 438
121256..121182 (258..282) - 79
121895..121695 (189..255) - 121
122015..121839 (163..221) - 208
122523..122323 (47..113) - 294
123878..123964 (259..287) + 69
124087..124539 (399..549) + 428
124648..124782 (567..611) + 66

gi|3510505[fasta] (AF030881) pol polyprotein [Fugu rubripes]
Length 1187 aa
position (link: detail on the area) subject position direction score
39848..39651 (872..937) - 81
39970..39857 (830..867) - 61
98966..99571 (396..597) + 92
100892..101050 (869..921) + 76

gi|3319352[fasta] (AF077407) No definition line found [Arabidopsis thaliana]
Length 850 aa
position (link: detail on the area) subject position direction score
13989..13666 (552..659) - 217
14465..14364 (320..353) - 64
14705..14652 (244..261) - 81
15068..14805 (120..207) - 258
15571..15314 (32..117) - 283
17418..17675 (32..117) + 249
17922..18185 (120..207) + 254
18288..18338 (245..261) + 69
33770..33844 (75..99) + 58
34149..34274 (122..163) + 81
42033..41677 (543..661) - 184
42662..42528 (333..377) - 81
43918..44274 (543..661) + 225
120939..120583 (543..661) - 253
121451..121326 (309..350) - 76
121658..121608 (244..260) - 65
122021..121758 (120..207) - 254
122514..122278 (36..114) - 291
123713..123805 (320..350) + 61
124171..124527 (543..661) + 264

gi|3319351[fasta] (AF077407) contains similarity to reverse transcriptases (PFam: rvt.hmm, score: 116.22) [Arabidopsis thaliana]
Length 1322 aa
position (link: detail on the area) subject position direction score
39388..39284 (1156..1190) - 48
39619..39422 (1091..1156) - 75
39743..39651 (1050..1080) - 51
98966..99550 (642..836) + 91

gi|3695399[fasta] (AF096372) contains similarity to Arabidopsis thaliana retrotransposon Athila (GB:X81801) [Arabidopsis thaliana]
Length 1064 aa
position (link: detail on the area) subject position direction score
10578..10402 (834..892) - 127
11262..11044 (712..784) - 105
12907..12845 (580..600) - 76
13989..13639 (416..532) - 343
14090..13977 (379..416) - 61
14309..14229 (236..262) - 96
14471..14322 (183..232) - 165
15580..15233 (11..126) - 418
17409..17741 (11..121) + 118
18519..18668 (183..232) + 141
18681..18761 (236..262) + 87
18890..19060 (370..426) + 129
19718..19789 (536..559) + 60
19847..19906 (581..600) + 67
21439..21666 (713..788) + 144
22119..22295 (834..892) + 97
33669..33749 (23..49) + 58
33770..33844 (57..81) + 44
33840..33941 (81..114) + 73
42042..41668 (404..528) - 302
42198..42103 (350..381) - 48
42352..42305 (321..336) - 43
43915..44280 (406..527) + 313
118141..117920 (711..784) - 110
119828..119766 (580..600) - 65
121050..120562 (370..532) - 446
121262..121182 (236..262) - 94
121535..121275 (146..232) - 268
122514..122203 (18..121) - 423
123707..123856 (183..232) + 167
123878..123949 (239..262) + 75
124087..124548 (379..532) + 429

gi|4544372|gb|AAD22283.1|AC006920_7[fasta] (AC006920) putative reverse transcriptase [Arabidopsis thaliana]
Length 1787 aa
position (link: detail on the area) subject position direction score
33861..34073 (290..360) + 531
39271..39242 (1742..1751) - 40
39436..39302 (1685..1729) - 46
39652..39506 (1614..1662) - 101
39815..39648 (1560..1615) - 69
39985..39887 (1503..1535) - 92
40078..40049 (1472..1481) - 44
40304..40086 (1397..1469) - 73
40923..40789 (834..878) - 104
41115..41020 (788..819) - 58
94780..95268 (204..366) + 355
97742..97810 (464..486) + 72
98093..98191 (563..595) + 70
98413..98559 (653..701) + 102
98806..98955 (716..765) + 128
98945..99427 (895..1055) + 631
99476..99646 (1052..1108) + 190
99631..99825 (1104..1168) + 223
100006..100068 (1192..1212) + 78
100092..100220 (1259..1301) + 122
100385..100810 (1380..1521) + 335
100808..101050 (1518..1598) + 296
101056..101547 (1603..1766) + 494
115147..115251 (973..1007) + 105
115220..115378 (997..1049) + 160
115444..115647 (1052..1119) + 157

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Entrance