HUGE |
Gene/Protein Characteristic Table for KIAA1562 |
Link to :
Rouge |
GTOP | SWISS-PROT/TrEMBL | GeneCards| RefDIC | |
Features : DNA sequence | Protein sequence | Expression | Mapping | |
Product ID : | ORK00864 |
---|---|
Accession No. : | AB046782 |
Description : | Protocadherin-18 precursor. |
HUGO Gene Name : | protocadherin 18 (PCDH18) |
Clone Name : | fh20205 [Vector Info] |
Flexi ORF Clone : | pF1KSDA1562
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Source : | Human fetal brain |
Features of the cloned DNA sequence |
Description | |
---|---|---|
Length: 5119 bp
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cloned DNA seq. | |
Warning for N-terminal truncation: | YES |
Warning for coding interruption: | YES |
Length of 3'UTR 1324 bp Genome contig ID gi89161207r_138560310 PolyA signal sequence
(AATAAA,-20) +----*----+----*----+----*----+----
TTTTCTGTCAGTGAAAATAAAAGAAAAATTAAAGTFlanking genome sequence
(100000 - 99951) ----+----*----+----*----+----*----+----*----+----*
AAAGCTAAGGAACTGTCTATAAGTCAGAGTCCTGTTCCTACATATTTGTT
Chr f/r start end exon identity class ContigView(URL based/DAS) 4 r 138660310 138673079 4 99.6 Perfect prediction
Features of the protein sequence |
Description | |
---|---|---|
Length: 1136 aa
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The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
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The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Search method | interpro_ID | From | To | Entry | Definition |
---|---|---|---|---|---|
FPrintScan | IPR002126 | 76 | 95 | PR00205 | Cadherin |
IPR002126 | 247 | 276 | PR00205 | Cadherin | |
IPR002126 | 320 | 332 | PR00205 | Cadherin | |
IPR002126 | 445 | 464 | PR00205 | Cadherin | |
IPR002126 | 464 | 477 | PR00205 | Cadherin | |
IPR002126 | 524 | 550 | PR00205 | Cadherin | |
IPR002126 | 559 | 576 | PR00205 | Cadherin | |
HMMPfam | IPR013164 | 29 | 115 | PF08266 | Cadherin |
IPR002126 | 143 | 238 | PF00028 | Cadherin | |
IPR002126 | 252 | 346 | PF00028 | Cadherin | |
IPR002126 | 372 | 457 | PF00028 | Cadherin | |
IPR002126 | 471 | 568 | PF00028 | Cadherin | |
IPR002126 | 587 | 667 | PF00028 | Cadherin | |
HMMSmart | IPR002126 | 52 | 136 | SM00112 | Cadherin |
IPR002126 | 160 | 245 | SM00112 | Cadherin | |
IPR002126 | 269 | 353 | SM00112 | Cadherin | |
IPR002126 | 383 | 464 | SM00112 | Cadherin | |
IPR002126 | 488 | 575 | SM00112 | Cadherin | |
IPR002126 | 604 | 685 | SM00112 | Cadherin | |
ProfileScan | IPR002126 | 27 | 138 | PS50268 | Cadherin |
IPR002126 | 139 | 247 | PS50268 | Cadherin | |
IPR002126 | 248 | 355 | PS50268 | Cadherin | |
IPR002126 | 370 | 466 | PS50268 | Cadherin | |
IPR002126 | 467 | 577 | PS50268 | Cadherin | |
IPR002126 | 583 | 689 | PS50268 | Cadherin | |
ScanRegExp | IPR002126 | 126 | 136 | PS00232 | Cadherin |
IPR002126 | 235 | 245 | PS00232 | Cadherin | |
IPR002126 | 343 | 353 | PS00232 | Cadherin | |
IPR002126 | 454 | 464 | PS00232 | Cadherin | |
IPR002126 | 565 | 575 | PS00232 | Cadherin |
Method | No. | N terminal | transmembrane region | C terminal | type | length |
---|---|---|---|---|---|---|
SOSUI2 | 1 | 9 | MHFRFVFALLIVSFNHDVLGKNL | 31 | SECONDARY | 23 |
2 | 675 | CMIFEYAESVTSTAMTSVSQASL | 697 | SECONDARY | 23 | |
3 | 700 | SMIIIISLGAICAVLLVIMVLFA | 722 | PRIMARY | 23 |
Expression profile |
Description | |
---|---|---|
RT-PCR-ELISA | Description |
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Experimental conditions
: AATGATGGGAAACACGAACTC | |
: GCAATGCCAGTTCTTTCAGGG | |
: 95 °C |
RH mapping information |
Description | |
---|---|---|
: 4 |
: unigene | |
: - | |
: - | |
: - | |
: - |
How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage ![]() | |