HUGE |
Gene/Protein Characteristic Table for KIAA0345 |
Link to :
Rouge |
GTOP | SWISS-PROT/TrEMBL | GeneCards| RefDIC | |
Features : DNA sequence | Protein sequence | Expression | Mapping | |
Product ID : | ORK05594 |
---|---|
Accession No. : | AB002343 |
Description : | Protocadherin alpha 9 precursor. |
HUGO Gene Name : | protocadherin alpha 9 (PCDHA9) |
Clone Name : | hg01491 [Vector Info] |
Source : | Human adult brain |
Features of the cloned DNA sequence |
Description | |
---|---|---|
Length: 6387 bp
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cloned DNA seq. | |
Warning for N-terminal truncation: | NO |
Warning for coding interruption: | NO |
Length of 3'UTR 3134 bp Genome contig ID gi51511721f_140107541 PolyA signal sequence
(None) +----*----+----*----+----*----+----
GCATTTCAGCCCGGGTGACAGCGAGATTCTGTCTCFlanking genome sequence
(106389 - 106438) ----+----*----+----*----+----*----+----*----+----*
AAAAAAAAAAAAAAAAAGAGTAGTTTAACTACTCCCTACTTTTTATTCAA
Chr f/r start end exon identity class ContigView(URL based/DAS) 5 f 140207541 140213928 1 99.0 Perfect prediction
Features of the protein sequence |
Description | |
---|---|---|
Length: 845 aa
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The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
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The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Search method | interpro_ID | From | To | Entry | Definition |
---|---|---|---|---|---|
FPrintScan | IPR002126 | 76 | 95 | PR00205 | Cadherin |
IPR002126 | 245 | 274 | PR00205 | Cadherin | |
IPR002126 | 423 | 435 | PR00205 | Cadherin | |
IPR002126 | 437 | 456 | PR00205 | Cadherin | |
IPR002126 | 456 | 469 | PR00205 | Cadherin | |
IPR002126 | 516 | 542 | PR00205 | Cadherin | |
IPR002126 | 550 | 567 | PR00205 | Cadherin | |
HMMPfam | IPR013164 | 32 | 115 | PF08266 | Cadherin |
IPR002126 | 141 | 236 | PF00028 | Cadherin | |
IPR002126 | 250 | 344 | PF00028 | Cadherin | |
IPR002126 | 358 | 449 | PF00028 | Cadherin | |
IPR002126 | 463 | 559 | PF00028 | Cadherin | |
IPR002126 | 591 | 673 | PF00028 | Cadherin | |
HMMSmart | IPR002126 | 48 | 134 | SM00112 | Cadherin |
IPR002126 | 158 | 243 | SM00112 | Cadherin | |
IPR002126 | 267 | 351 | SM00112 | Cadherin | |
IPR002126 | 375 | 456 | SM00112 | Cadherin | |
IPR002126 | 480 | 566 | SM00112 | Cadherin | |
IPR002126 | 597 | 679 | SM00112 | Cadherin | |
ProfileScan | IPR002126 | 11 | 136 | PS50268 | Cadherin |
IPR002126 | 137 | 245 | PS50268 | Cadherin | |
IPR002126 | 246 | 353 | PS50268 | Cadherin | |
IPR002126 | 354 | 458 | PS50268 | Cadherin | |
IPR002126 | 459 | 568 | PS50268 | Cadherin | |
IPR002126 | 591 | 681 | PS50268 | Cadherin | |
ScanRegExp | IPR002126 | 124 | 134 | PS00232 | Cadherin |
IPR002126 | 233 | 243 | PS00232 | Cadherin | |
IPR002126 | 341 | 351 | PS00232 | Cadherin | |
IPR002126 | 446 | 456 | PS00232 | Cadherin | |
IPR002126 | 556 | 566 | PS00232 | Cadherin |
Method | No. | N terminal | transmembrane region | C terminal | type | length |
---|---|---|---|---|---|---|
SOSUI2 | 1 | 15 | QPLLLSLLILAMWVVGSGQLHYS | 37 | PRIMARY | 23 |
2 | 701 | VYLIIAICAVSSLLVLTLLLYTV | 723 | PRIMARY | 23 | |
3 | 812 | IIFFLERYYRLLPGAVQIVLFIF | 834 | PRIMARY | 23 |
Expression profile |
Description | |
---|---|---|
RT-PCR | Description |
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: TGCTCTTACTACCCATTTCAG | |
: CGCATTAGCATTAGCAGCACC | |
: 95 °C |
RH mapping information |
Description | |
---|---|---|
: 5 |
: GeneBridge 4 | |
: TGCTCTTACTACCCATTTCAG | |
: CGCATTAGCATTAGCAGCACC | |
: 88 bp | |
: 95 °C |
How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage ![]() | |