HUGE

Gene/Protein Characteristic Table for KIAA0345

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK05594
Accession No. :	AB002343
Description :	Protocadherin alpha 9 precursor.
HUGO Gene Name :	protocadherin alpha 9 (PCDHA9)
Clone Name :	hg01491 [Vector Info]
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 6387 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 3134 bp

Genome contig ID gi51511721f_140107541
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
GCATTTCAGCCCGGGTGACAGCGAGATTCTGTCTC
Flanking genome sequence
(106389 - 106438)
----+----*----+----*----+----*----+----*----+----*
AAAAAAAAAAAAAAAAAGAGTAGTTTAACTACTCCCTACTTTTTATTCAA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 5 f 140207541 140213928 1 99.0 Perfect prediction

Features of the protein sequence	Description

Length: 845 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
EAW62007	99.6	hCG1982192, iso...	Homo sapiens
Q9Y5H5	100.0	Protocadherin a...	Homo sapiens
EAW61994	99.6	hCG1982192, iso...	Homo sapiens
Q5DRE3	99.0	Protocadherin a...	Pan troglodytes
XP_001088201	95.1	protocadherin a...	Macaca mulatta

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB011160	3.7e-113	41.5	KIAA0588
AB002325	4.5e-110	43.6	KIAA0327
AB046841	2.5e-105	41.0	KIAA1621
AB046782	3e-89	34.5	KIAA1562
AB037821	2.6e-76	41.9	KIAA1400

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

FPrintScan IPR002126 76 95 PR00205 Cadherin

IPR002126 245 274 PR00205 Cadherin

IPR002126 423 435 PR00205 Cadherin

IPR002126 437 456 PR00205 Cadherin

IPR002126 456 469 PR00205 Cadherin

IPR002126 516 542 PR00205 Cadherin

IPR002126 550 567 PR00205 Cadherin

HMMPfam IPR013164 32 115 PF08266 Cadherin

IPR002126 141 236 PF00028 Cadherin

IPR002126 250 344 PF00028 Cadherin

IPR002126 358 449 PF00028 Cadherin

IPR002126 463 559 PF00028 Cadherin

IPR002126 591 673 PF00028 Cadherin

HMMSmart IPR002126 48 134 SM00112 Cadherin

IPR002126 158 243 SM00112 Cadherin

IPR002126 267 351 SM00112 Cadherin

IPR002126 375 456 SM00112 Cadherin

IPR002126 480 566 SM00112 Cadherin

IPR002126 597 679 SM00112 Cadherin

ProfileScan IPR002126 11 136 PS50268 Cadherin

IPR002126 137 245 PS50268 Cadherin

IPR002126 246 353 PS50268 Cadherin

IPR002126 354 458 PS50268 Cadherin

IPR002126 459 568 PS50268 Cadherin

IPR002126 591 681 PS50268 Cadherin

ScanRegExp IPR002126 124 134 PS00232 Cadherin

IPR002126 233 243 PS00232 Cadherin

IPR002126 341 351 PS00232 Cadherin

IPR002126 446 456 PS00232 Cadherin

IPR002126 556 566 PS00232 Cadherin

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR002126	76	95	PR00205	Cadherin
IPR002126	245	274	PR00205	Cadherin
IPR002126	423	435	PR00205	Cadherin
IPR002126	437	456	PR00205	Cadherin
IPR002126	456	469	PR00205	Cadherin
IPR002126	516	542	PR00205	Cadherin
IPR002126	550	567	PR00205	Cadherin
HMMPfam	IPR013164	32	115	PF08266	Cadherin
IPR002126	141	236	PF00028	Cadherin
IPR002126	250	344	PF00028	Cadherin
IPR002126	358	449	PF00028	Cadherin
IPR002126	463	559	PF00028	Cadherin
IPR002126	591	673	PF00028	Cadherin
HMMSmart	IPR002126	48	134	SM00112	Cadherin
IPR002126	158	243	SM00112	Cadherin
IPR002126	267	351	SM00112	Cadherin
IPR002126	375	456	SM00112	Cadherin
IPR002126	480	566	SM00112	Cadherin
IPR002126	597	679	SM00112	Cadherin
ProfileScan	IPR002126	11	136	PS50268	Cadherin
IPR002126	137	245	PS50268	Cadherin
IPR002126	246	353	PS50268	Cadherin
IPR002126	354	458	PS50268	Cadherin
IPR002126	459	568	PS50268	Cadherin
IPR002126	591	681	PS50268	Cadherin
ScanRegExp	IPR002126	124	134	PS00232	Cadherin
IPR002126	233	243	PS00232	Cadherin
IPR002126	341	351	PS00232	Cadherin
IPR002126	446	456	PS00232	Cadherin
IPR002126	556	566	PS00232	Cadherin

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 15 QPLLLSLLILAMWVVGSGQLHYS 37 PRIMARY 23

2 701 VYLIIAICAVSSLLVLTLLLYTV 723 PRIMARY 23

3 812 IIFFLERYYRLLPGAVQIVLFIF 834 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	15	QPLLLSLLILAMWVVGSGQLHYS	37	PRIMARY	23
2	701	VYLIIAICAVSSLLVLTLLLYTV	723	PRIMARY	23
3	812	IIFFLERYYRLLPGAVQIVLFIF	834	PRIMARY	23

Expression profile	Description

: RT-PCR Description

Experimental conditions

Primer_f
: TGCTCTTACTACCCATTTCAG

Primer_r
: CGCATTAGCATTAGCAGCACC

PCR conditions
: 95 °C15 sec62 °C60 sec30 cycles

RT-PCR	Description

RH mapping information	Description

Chromosome No.

: 5

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: TGCTCTTACTACCCATTTCAG
Primer_r	: CGCATTAGCATTAGCAGCACC
PCR product length	: 88 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	3134 bp
Genome contig ID	gi51511721f_140107541
PolyA signal sequence (None)	+--------+--------+----*----+---- GCATTTCAGCCCGGGTGACAGCGAGATTCTGTCTC
Flanking genome sequence (106389 - 106438)	----+--------+--------+--------+--------+----* AAAAAAAAAAAAAAAAAGAGTAGTTTAACTACTCCCTACTTTTTATTCAA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	5	f	140207541	140213928	1	99.0	Perfect prediction

Gene/Protein Characteristic Table for KIAA0345

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information