HUGE

Gene/Protein Characteristic Table for KIAA1201

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00764
Accession No. :	AB033027
Description :	GRAM domain-containing protein 1B.
HUGO Gene Name :	GRAM domain containing 1B (GRAMD1B)
Clone Name :	fg03153 [Vector Info]
Flexi ORF Clone :	pF1KSDA1201
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 6225 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 3832 bp

Genome contig ID gi51511727f_122836247
PolyA signal sequence
(AATGAA,-18)
+----*----+----*----+----*----+----
AACTATACCTTCTGCATAATGAATTAACTAGAAAT
Flanking genome sequence None

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 11 f 122936247 123002319 19 99.2 Terminal No-hit

Features of the protein sequence	Description

Length: 761 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q3KR37	100.0	GRAM domain-con...	Homo sapiens
XP_001108370	99.5	similar to CG33...	Macaca mulatta
BAG54507	98.9	unnamed protein...	Homo sapiens
XP_001503463	98.9	similar to GRAM...	Equus caballus
AAH70451	97.3	Gramd1b protein...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB040966	1.2e-75	47.5	KIAA1533
AB020689	1.3e-05	35.7	KIAA0882
AB014576	0.00051	33.9	KIAA0676

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR004182 119 186 PF02893 GRAM

HMMSmart IPR004182 119 186 SM00568 GRAM

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR004182	119	186	PF02893	GRAM
HMMSmart	IPR004182	119	186	SM00568	GRAM

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 646 LLLVISCVICFSLVLLVILNMML 668 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	646	LLLVISCVICFSLVLLVILNMML	668	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: AACGGAGAGCACTTATTTGGC

Primer_r
: CCTGCCACATGTTTGATCCTG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 11

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: AACGGAGAGCACTTATTTGGC
Primer_r	: CCTGCCACATGTTTGATCCTG
PCR product length	: 189 bp
PCR conditions	: 95 °C15 sec64 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	3832 bp
Genome contig ID	gi51511727f_122836247
PolyA signal sequence (AATGAA,-18)	+--------+--------+----*----+---- AACTATACCTTCTGCATAATGAATTAACTAGAAAT
Flanking genome sequence	None

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	11	f	122936247	123002319	19	99.2	Terminal No-hit

Gene/Protein Characteristic Table for KIAA1201

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information