Gene/Protein Characteristic Table for KIAA1900
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Product ID ORK05769
Accession No AB067487
Description kelch-like family member 32
Clone name fk07650
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (3221 bp)
Predicted protein sequence (582 aa)
Source Human fetal brain
Rouge ID mKIAA1900 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 3221 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 1472 bp
Genome contig ID gi89161210f_97430685
PolyA signal sequence
(AATAAA,-27)
+----*----+----*----+----*----+----
CAAAAGTGAATAAAAACGATCTTTTTGTCTTACAG
Flanking genome sequence
(264668 - 264717)
----+----*----+----*----+----*----+----*----+----*
AATTCACTAACTTCATATATCGTTATACACAAAACATTGAAAATACATAA

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 6 f 97530685 97695351 9 100.0 Perfect prediction
Features of the protein sequence
Description

Length: 582 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
XP_518646 0 99.7 similar to RP1-...
Pan troglodytes
BAB70899 0 99.8 unnamed protein...
Homo sapiens
XP_001503889 0 98.6 kelch-like 32 (...
Equus caballus
XP_872392 0 98.3 similar to Kelc...
Bos taurus
CAM14812 0 98.5 kelch-like 32 (...
Mus musculus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB037805 1.3e-33 28.7 KIAA1384
AB037775 6e-26 36.8 KIAA1354
AB037730 1.5e-24 36.7 KIAA1309
AB067508 1.7e-21 24.7 KIAA1921
AB032955 2.1e-21 28.5 KIAA1129
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR013069 2 101 PF00651 BTB/POZ
IPR011705 106 207 PF07707 BTB/Kelch-associated
IPR006652 297 347 PF01344 Kelch repeat type 1
IPR006652 349 395 PF01344 Kelch repeat type 1
IPR006652 397 443 PF01344 Kelch repeat type 1
IPR006652 445 495 PF01344 Kelch repeat type 1
IPR006652 503 548 PF01344 Kelch repeat type 1
HMMSmart IPR000210 4 101 SM00225 BTB/POZ-like
IPR006652 252 308 SM00612 Kelch repeat type 1
IPR006652 309 360 SM00612 Kelch repeat type 1
IPR006652 361 408 SM00612 Kelch repeat type 1
IPR006652 409 456 SM00612 Kelch repeat type 1
IPR006652 457 509 SM00612 Kelch repeat type 1
ProfileScan IPR000210 4 71 PS50097 BTB/POZ-like
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f TGCTGGATATGTGGCTGATGG
Primer_r GATCCGGTCATTATTGTAGTC
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 6
Experimental conditions
Panel name genbank
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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