hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-16010320/chunk_1/iprscan-20080502-16010320.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1900 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01344.15.ls Kelch motif 162.8 8.3e-46 5 PF01344.15.fs Kelch motif 157.1 4.4e-44 6 PF00651.21.fs BTB/POZ domain 118.9 1.1e-32 2 PF00651.21.ls BTB/POZ domain 98.7 1.6e-26 1 PF07646.5.ls Kelch motif 75.0 2.2e-19 4 PF07707.5.ls BTB And C-terminal Kelch 74.9 2.3e-19 1 PF07707.5.fs BTB And C-terminal Kelch 73.0 4.4e-19 1 PF07646.5.fs Kelch motif 72.5 7.2e-19 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00651.21.fs 1/2 1 101 [. 8 135 .] 108.5 8.9e-30 PF00651.21.ls 1/1 2 101 .. 1 135 [] 98.7 1.6e-26 PF00651.21.fs 2/2 105 133 .. 106 135 .] 10.4 0.02 PF07707.5.fs 1/1 106 207 .. 1 103 [] 73.0 4.4e-19 PF07707.5.ls 1/1 106 207 .. 1 103 [] 74.9 2.3e-19 PF01344.15.fs 2/6 297 347 .. 1 45 [] 39.2 2.6e-10 PF07646.5.ls 1/4 297 347 .. 1 54 [] 29.6 1e-05 PF07646.5.fs 1/5 297 347 .. 1 54 [] 27.6 1.2e-06 PF01344.15.ls 1/5 297 347 .. 1 45 [] 41.2 3.2e-09 PF01344.15.fs 3/6 349 395 .. 1 45 [] 39.8 1.8e-10 PF01344.15.ls 2/5 349 395 .. 1 45 [] 41.8 2.2e-09 PF01344.15.fs 4/6 397 443 .. 1 45 [] 23.8 6.4e-06 PF07646.5.ls 3/4 397 443 .. 1 54 [] 15.1 0.24 PF01344.15.ls 3/5 397 443 .. 1 45 [] 25.8 0.00015 PF07646.5.ls 4/4 445 495 .. 1 54 [] 18.4 0.024 PF01344.15.ls 4/5 445 495 .. 1 45 [] 36.1 1.2e-07 PF01344.15.fs 5/6 445 495 .. 1 45 [] 34.0 7.6e-09 PF07646.5.fs 4/5 445 495 .. 1 54 [] 16.4 0.0013 PF01344.15.ls 5/5 498 548 .. 1 45 [] 17.9 0.033 PF01344.15.fs 6/6 503 548 .. 6 45 .] 18.3 0.00023 Alignments of top-scoring domains: PF00651.21.fs: domain 1 of 2, from 1 to 101: score 108.5, E = 8.9e-30 *->gelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkalFtgqfke g+lcD+tL +++ +kf+AHKavLaacS+YF+a+F+ KIAA1900 1 GILCDITLIAEE--------QKFHAHKAVLAACSDYFRAMFSLC--- 36 siteeessvsseieledvspedfealLefiYtgelsitqdqksPssckse + e+ ++ e++l +v+ +++ Lef+Ytg + ++ + KIAA1900 37 -MVESGAD---EVNLHGVTSLGLKQALEFAYTGQILLE-----------P 71 envedlLaaAadllqipslvdaCeefliksl<-* + ++d+Laa+ ++lq+ l ++C ++li+ l KIAA1900 72 GVIQDVLAAG-SHLQLLELLNLCSHYLIQEL 101 PF00651.21.ls: domain 1 of 1, from 2 to 101: score 98.7, E = 1.6e-26 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal +lcD+tL +++ +kf+AHKavLaacS+YF+a+ KIAA1900 2 --------ILCDITLIAEE--------QKFHAHKAVLAACSDYFRAM 32 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks F+ + e+ ++ e++l +v+ +++ Lef+Ytg + ++ KIAA1900 33 FSLC----MVESGAD---EVNLHGVTSLGLKQALEFAYTGQILLE----- 70 PssckseenvedlLaaAadllqipslvdaCeefliksl<-* ++ ++d+Laa+ ++lq+ l ++C ++li+ l KIAA1900 71 ------PGVIQDVLAAG-SHLQLLELLNLCSHYLIQEL 101 PF00651.21.fs: domain 2 of 2, from 105 to 133: score 10.4, E = 0.02 *->nvedlLaaAadllqipslvdaCeefliksl<-* n dl ++A dl+ + l +a+++fl+k+l KIAA1900 105 NYLDLYRLA-DLFNLTLLEKAVIDFLVKHL 133 PF07707.5.fs: domain 1 of 1, from 106 to 207: score 73.0, E = 4.4e-19 *->CLgIrrfAdaygceeLaeaAdrfilqnFleVaks..eEFlqLskeqL L+++r+Ad ++++ L +a+ +f+ ++ +e++ks++eE l+L+ + L KIAA1900 106 YLDLYRLADLFNLTLLEKAVIDFLVKHLSELLKSrpEEVLTLPYCLL 152 ielLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLLshVRLpLLsp +e+L sD+L+ sEe++++ ++rW+ h+ + +++ eLL+++R+ L+ KIAA1900 153 QEVLKSDRLTSLSEEQIWQLAVRWLEHN--CHYQYMDELLQYIRFGLMDV 200 kyLlevve<-* + L + v+ KIAA1900 201 DTLHT-VA 207 PF07707.5.ls: domain 1 of 1, from 106 to 207: score 74.9, E = 2.3e-19 *->CLgIrrfAdaygceeLaeaAdrfilqnFleVaks..eEFlqLskeqL L+++r+Ad ++++ L +a+ +f+ ++ +e++ks++eE l+L+ + L KIAA1900 106 YLDLYRLADLFNLTLLEKAVIDFLVKHLSELLKSrpEEVLTLPYCLL 152 ielLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLLshVRLpLLsp +e+L sD+L+ sEe++++ ++rW+ h+ + +++ eLL+++R+ L+ KIAA1900 153 QEVLKSDRLTSLSEEQIWQLAVRWLEHN--CHYQYMDELLQYIRFGLMDV 200 kyLlevve<-* + L + v+ KIAA1900 201 DTLHT-VA 207 PF01344.15.fs: domain 2 of 6, from 297 to 347: score 39.2, E = 2.6e-10 *->pRsgagvvvldgkiYviGGydg......qslnsvevYDpetntWtkl Rs+++v+v+++ ++v+GG + ++++ +++++ +YDp++n+W ++ KIAA1900 297 GRSHHCVAVMGDFLFVAGGEVEhasgrtCAVRTACRYDPRSNSWAEI 343 psmp<-* ++m+ KIAA1900 344 APMK 347 PF07646.5.ls: domain 1 of 4, from 297 to 347: score 29.6, E = 1e-05 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r++h ++v+g+ l+v GG +++ + ++ ++ +++dp++n+W KIAA1900 297 GRSHHCVAVMGDFLFVAGGE---VEHASGRTCAVRTACRYDPRSNSW 340 eklpalp<-* ++++++ KIAA1900 341 AEIAPMK 347 PF07646.5.fs: domain 1 of 5, from 297 to 347: score 27.6, E = 1.2e-06 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r++h ++v+g+ l+v GG +++ + ++ ++ +++dp++n+W KIAA1900 297 GRSHHCVAVMGDFLFVAGGE---VEHASGRTCAVRTACRYDPRSNSW 340 eklpalp<-* ++++++ KIAA1900 341 AEIAPMK 347 PF01344.15.ls: domain 1 of 5, from 297 to 347: score 41.2, E = 3.2e-09 *->pRsgagvvvldgkiYviGGydg......qslnsvevYDpetntWtkl Rs+++v+v+++ ++v+GG + ++++ +++++ +YDp++n+W ++ KIAA1900 297 GRSHHCVAVMGDFLFVAGGEVEhasgrtCAVRTACRYDPRSNSWAEI 343 psmp<-* ++m+ KIAA1900 344 APMK 347 PF01344.15.fs: domain 3 of 6, from 349 to 395: score 39.8, E = 1.8e-10 *->pRsgagvvvldgkiYviGGydg..qslnsvevYDpetntWtklpsmp +R ++ +++ ++Y++GG++ +q l +ve+Y p++n+Wt++ s KIAA1900 349 CREHFVLGAMEEYLYAVGGRNElrQVLPTVERYCPKKNKWTFVQSFD 395 <-* KIAA1900 - - PF01344.15.ls: domain 2 of 5, from 349 to 395: score 41.8, E = 2.2e-09 *->pRsgagvvvldgkiYviGGydg..qslnsvevYDpetntWtklpsmp +R ++ +++ ++Y++GG++ +q l +ve+Y p++n+Wt++ s KIAA1900 349 CREHFVLGAMEEYLYAVGGRNElrQVLPTVERYCPKKNKWTFVQSFD 395 <-* KIAA1900 - - PF01344.15.fs: domain 4 of 6, from 397 to 443: score 23.8, E = 6.4e-06 *->pRsgagvvvldgkiYviGGydg..qslnsvevYDpetntWtklpsmp s+++ v dg++++ GG++++ q+ n vY p n+W ++m KIAA1900 397 SLSCHAGYVADGLLWISGGVTNtaQYQNRLMVYEPNQNKWISRSPML 443 <-* KIAA1900 - - PF07646.5.ls: domain 3 of 4, from 397 to 443: score 15.1, E = 0.24 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW ++++ha v +g l ++GG+ n + ++++l+v+ p+ n+W KIAA1900 397 SLSCHAGYVADGLLWISGGV-------TNTAQYQNRLMVYEPNQNKW 436 eklpalp<-* +++ KIAA1900 437 ISRSPML 443 PF01344.15.ls: domain 3 of 5, from 397 to 443: score 25.8, E = 0.00015 *->pRsgagvvvldgkiYviGGydg..qslnsvevYDpetntWtklpsmp s+++ v dg++++ GG++++ q+ n vY p n+W ++m KIAA1900 397 SLSCHAGYVADGLLWISGGVTNtaQYQNRLMVYEPNQNKWISRSPML 443 <-* KIAA1900 - - PF07646.5.ls: domain 4 of 4, from 445 to 495: score 18.4, E = 0.024 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r+ h+++ ++ klyv GG +++ n+ + +++ ++ +t +W KIAA1900 445 RRVYHSMAAVQRKLYVLGGN---DLDYNNDRILVRHIDSYNIDTDQW 488 eklpalp<-* ++++ KIAA1900 489 TRCNFNL 495 PF01344.15.ls: domain 4 of 5, from 445 to 495: score 36.1, E = 1.2e-07 *->pRsgagvvvldgkiYviGGydg......qslnsvevYDpetntWtkl +R+++++++++ k+Yv GG d + ++++ ++ +++Y+ +t++Wt++ KIAA1900 445 RRVYHSMAAVQRKLYVLGGNDLdynndrILVRHIDSYNIDTDQWTRC 491 psmp<-* KIAA1900 492 NFNL 495 PF01344.15.fs: domain 5 of 6, from 445 to 495: score 34.0, E = 7.6e-09 *->pRsgagvvvldgkiYviGGydg......qslnsvevYDpetntWtkl +R+++++++++ k+Yv GG d + ++++ ++ +++Y+ +t++Wt++ KIAA1900 445 RRVYHSMAAVQRKLYVLGGNDLdynndrILVRHIDSYNIDTDQWTRC 491 psmp<-* KIAA1900 492 NFNL 495 PF07646.5.fs: domain 4 of 5, from 445 to 495: score 16.4, E = 0.0013 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r+ h+++ ++ klyv GG +++ n+ + +++ ++ +t +W KIAA1900 445 RRVYHSMAAVQRKLYVLGGN---DLDYNNDRILVRHIDSYNIDTDQW 488 eklpalp<-* ++++ KIAA1900 489 TRCNFNL 495 PF01344.15.ls: domain 5 of 5, from 498 to 548: score 17.9, E = 0.033 *->pRsgagvvvldgkiYviGGydg...qslnsvevYDpe...tntWtkl gv+v++g+iY +GGy+ ++++l ++ v+D++++++ + ++ KIAA1900 498 GQNESGVAVHNGRIYLVGGYSIwtnEPLACIQVLDVSregKEEVFYG 544 psmp<-* p++p KIAA1900 545 PTLP 548 PF01344.15.fs: domain 6 of 6, from 503 to 548: score 18.3, E = 0.00023 *->gvvvldgkiYviGGydg...qslnsvevYDpe...tntWtklpsmp< gv+v++g+iY +GGy+ ++++l ++ v+D++++++ + ++p++p KIAA1900 503 GVAVHNGRIYLVGGYSIwtnEPLACIQVLDVSregKEEVFYGPTLP 548 -* KIAA1900 - - //