hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-16010320/chunk_1/iprscan-20080502-16010320.nocrc
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Query sequence: KIAA1900
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00612                                                 113.8    1.9e-29   5
SM00225                                                  95.5    6.1e-24   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00225      1/1       4   101 ..     1   114 []    95.5  6.1e-24
SM00612      1/5     252   308 ..     1    55 []    15.4     0.37
SM00612      2/5     309   360 ..     1    55 []    14.1     0.54
SM00612      3/5     361   408 ..     1    55 []    29.6  0.00043
SM00612      4/5     409   456 ..     1    55 []    29.0  0.00066
SM00612      5/5     457   509 ..     1    55 []    25.8   0.0061

Alignments of top-scoring domains:
SM00225: domain 1 of 1, from 4 to 101: score 95.5, E = 6.1e-24
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      cD+tl++++         +kfha  HkavLaac   S+yF+a+f+  
    KIAA1900     4    CDITLIAEE---------QKFHA--HKAVLAAC---SDYFRAMFSLc 36   

                   ........ieldDeallievspeaFralLnflYt.kldlpeedvenveel
                     +++ ++++l +      v+   ++  L+f Yt+++ l +     ++++
    KIAA1900    37 mvesgadeVNLHG------VTSLGLKQALEFAYTgQILLEPG---VIQDV 77   

                   LelAdfldSYGqip.lvelCeefllknl<-*
                   L++ + l    q+ +l  lC  +l++ l   
    KIAA1900    78 LAAGSHL----QLLeLLNLCSHYLIQEL    101  

SM00612: domain 1 of 5, from 252 to 308: score 15.4, E = 0.37
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnk.........Wrpv
                       +Y++GG  +  +        +k   +++p  +++       +W+++
    KIAA1900   252    TLYIIGGKKREVC-------KVKELRYFNPVDQEnaliaaianWSEL 291  

                   psMptpRsgagvaving<-*
                   ++Mp++Rs+++vav+++   
    KIAA1900   292 APMPVGRSHHCVAVMGD    308  

SM00612: domain 2 of 5, from 309 to 360: score 14.1, E = 0.54
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
                       ++v+GG   +  ++   + +++++ +YDp++n W ++++M+++R +
    KIAA1900   309    FLFVAGGEVEHASGR---TCAVRTACRYDPRSNSWAEIAPMKNCREH 352  

                   agvaving<-*
                   + ++++++   
    KIAA1900   353 FVLGAMEE    360  

SM00612: domain 3 of 5, from 361 to 408: score 29.6, E = 0.00043
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
                       +Y+vGG++          q+l +vE+Y p+ nkW+ v s  +  s 
    KIAA1900   361    YLYAVGGRNEL-------RQVLPTVERYCPKKNKWTFVQSFDRSLSC 400  

                   agvaving<-*
                   ++  v +g   
    KIAA1900   401 HAGYVADG    408  

SM00612: domain 4 of 5, from 409 to 456: score 29.0, E = 0.00066
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
                      ++ + GG  +t       +q+ +   vY p  nkW +  +M ++R +
    KIAA1900   409    LLWISGGVTNT-------AQYQNRLMVYEPNQNKWISRSPMLQRRVY 448  

                   agvaving<-*
                   +++a+++    
    KIAA1900   449 HSMAAVQR    456  

SM00612: domain 5 of 5, from 457 to 509: score 25.8, E = 0.0061
                   *->kiYvvGG....fdgttrclpgegqrlksvEvYDpetnkWrpvp.sMp
                      k+Yv GG++ ++++       +   ++ ++ Y+ +t++W++++ ++ 
    KIAA1900   457    KLYVLGGndldYNN-------DRILVRHIDSYNIDTDQWTRCNfNLL 496  

                   tpRsgagvaving<-*
                   t+   +gvav+ng   
    KIAA1900   497 TGQNESGVAVHNG    509  

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