Gene/Protein Characteristic Table for KIAA1306
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Product ID ORK04438
Accession No AB037727
Description CASK interacting protein 1
Clone name fh05845
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (4832 bp)
Predicted protein sequence (1154 aa)
Source Human fetal brain
Rouge ID mKIAA1306 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 4832 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 1367 bp
Genome contig ID gi51511732r_2067185
PolyA signal sequence
(AATAAA,-17)
+----*----+----*----+----*----+----
GCGCTGCCGTCGGCTGTCAATAAACAGCAGGAAAC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AGAGGTGCCTGGCTCACTTTTTGGGGGCACATGTGTTGGGGGAGATGGGA

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 16 r 2167185 2177078 12 100.0 Perfect prediction
Features of the protein sequence
Description

Length: 1154 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
EAW85543 0 100.0 CASK interactin...
Homo sapiens
Q8WXD9 0 100.0 Caskin-1; CASK-...
Homo sapiens
XP_001084114 0 97.1 similar to CASK...
Macaca mulatta
EAW85544 0 99.7 CASK interactin...
Homo sapiens
NP_542421 0 88.1 CASK interactin...
Rattus norvegicus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB032965 9.9e-14 36.7 KIAA1139
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR011511 8 68 PF07653 Variant SH3
IPR001660 193 256 PF00536 Sterile alpha motif SAM
IPR001660 272 326 PF00536 Sterile alpha motif SAM
HMMSmart IPR001452 7 69 SM00326 Src homology-3
IPR001660 192 258 SM00454 Sterile alpha motif SAM
IPR001660 261 328 SM00454 Sterile alpha motif SAM
ProfileScan IPR001452 4 70 PS50002 Src homology-3
IPR001660 195 258 PS50105 Sterile alpha motif SAM
IPR001660 264 328 PS50105 Sterile alpha motif SAM
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f CCCCCTCCAAGAAGTACTGAC
Primer_r ACAATCGCTGGTTTTCGGCAT
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 16
Experimental conditions
Panel name unigene
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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