hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-23093060/chunk_1/iprscan-20080501-23093060.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1306 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00536.20.fs SAM domain (Sterile alpha motif) 143.4 1.3e-41 2 PF00536.20.ls SAM domain (Sterile alpha motif) 146.6 6.3e-41 2 PF07647.7.fs SAM domain (Sterile alpha motif) 100.7 7.3e-29 2 PF07647.7.ls SAM domain (Sterile alpha motif) 103.9 4.4e-28 2 PF00018.18.ls SH3 domain 9.1 0.0021 1 PF07653.7.ls Variant SH3 domain 18.9 0.0036 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00018.18.ls 1/1 7 68 .. 1 59 [] 9.1 0.0021 PF07653.7.ls 1/1 8 68 .. 1 69 [] 18.9 0.0036 PF07647.7.fs 1/2 192 252 .. 1 66 [. 53.8 4e-15 PF07647.7.ls 1/2 192 258 .. 1 72 [] 55.1 2.1e-13 PF00536.20.fs 1/2 193 256 .. 1 65 [] 82.8 9.2e-24 PF00536.20.ls 1/2 193 256 .. 1 65 [] 84.8 2.5e-22 PF07647.7.fs 2/2 261 328 .. 1 72 [] 46.8 4.4e-13 PF07647.7.ls 2/2 261 328 .. 1 72 [] 48.8 1.7e-11 PF00536.20.ls 2/2 263 326 .. 1 65 [] 61.8 2.1e-15 PF00536.20.fs 2/2 272 326 .. 11 65 .] 60.6 3.3e-17 Alignments of top-scoring domains: PF00018.18.ls: domain 1 of 1, from 7 to 68: score 9.1, E = 0.0021 *->kkvvALYDYeare.sdELsFkkGDvitvleksddpgWWkgrlkgtgG +v+A DY + + L k GD+itvle+++d g Wkg +++ KIAA1306 7 LQVRATKDYCNNYdLTSLNVKAGDIITVLEQHPD-GRWKGCIHDN-R 51 ....keGliPsNYVepv<-* ++++++G++Ps+ e + KIAA1306 52 tgndRVGYFPSSLGEAI 68 PF07653.7.ls: domain 1 of 1, from 8 to 68: score 18.9, E = 0.0036 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe +ra++dy + ++ + L++k+Gd++ V+ ++ +dg w+ KIAA1306 8 QVRATKDYCN-NYDLTS-----LNVKAGDIITVL----EQHPDGRWK 44 ges....lggGrrrRGlvPssaveel<-* g +++++g+ r+ G++Pss+ e + KIAA1306 45 GCIhdnrTGNDRV--GYFPSSLGEAI 68 PF07647.7.fs: domain 1 of 2, from 192 to 252: score 53.8, E = 4e-15 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa e +s+e v++WL + l + Y++nF ++g++ + r+t edL KIAA1306 192 SEGKSSEAVSQWLTAFQL-QLYAPNFISAGYDL-PTI-SRMTPEDL- 234 klalGitsvghRkkilkki<-* + a+G+t++ghRkki +i KIAA1306 235 T-AIGVTKPGHRKKIAAEI 252 PF07647.7.ls: domain 1 of 2, from 192 to 258: score 55.1, E = 2.1e-13 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa e +s+e v++WL + l + Y++nF ++g++ + r+t edL KIAA1306 192 SEGKSSEAVSQWLTAFQL-QLYAPNFISAGYDL-PTI-SRMTPEDL- 234 klalGitsvghRkkilkkiqelkqq<-* + a+G+t++ghRkki +i l + KIAA1306 235 T-AIGVTKPGHRKKIAAEISGLSIP 258 PF00536.20.fs: domain 1 of 2, from 193 to 256: score 82.8, E = 9.2e-24 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG +g+s e V++WL ++ l+ Y+ nF+sagy d+ t++++t+eDL+++G KIAA1306 193 EGKSSEAVSQWLTAFQLQLYAPNFISAGY-DLPTISRMTPEDLTAIG 238 vtllGHrkKIlssIqgLk<-* vt++GHrkKI+ I gL KIAA1306 239 VTKPGHRKKIAAEISGLS 256 PF00536.20.ls: domain 1 of 2, from 193 to 256: score 84.8, E = 2.5e-22 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG +g+s e V++WL ++ l+ Y+ nF+sagy d+ t++++t+eDL+++G KIAA1306 193 EGKSSEAVSQWLTAFQLQLYAPNFISAGY-DLPTISRMTPEDLTAIG 238 vtllGHrkKIlssIqgLk<-* vt++GHrkKI+ I gL KIAA1306 239 VTKPGHRKKIAAEISGLS 256 PF07647.7.fs: domain 2 of 2, from 261 to 328: score 46.8, E = 4.4e-13 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa + + ++a WL+ igl +qY + d+g++ ++ + +t edL KIAA1306 261 LPEHKPANLAVWLSMIGL-AQYYKVLVDNGYENIDFI-TDITWEDL- 304 klalGitsvghRkkilkkiqelkqq<-* + ++Git++gh+kk++ ++ +l + KIAA1306 305 Q-EIGITKLGHQKKLMLAVRKLAEL 328 PF07647.7.ls: domain 2 of 2, from 261 to 328: score 48.8, E = 1.7e-11 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa + + ++a WL+ igl +qY + d+g++ ++ + +t edL KIAA1306 261 LPEHKPANLAVWLSMIGL-AQYYKVLVDNGYENIDFI-TDITWEDL- 304 klalGitsvghRkkilkkiqelkqq<-* + ++Git++gh+kk++ ++ +l + KIAA1306 305 Q-EIGITKLGHQKKLMLAVRKLAEL 328 PF00536.20.ls: domain 2 of 2, from 263 to 326: score 61.8, E = 2.1e-15 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG ++++ + ++ WL igl+qY + + +gy ++d ++ +t+eDL+++G KIAA1306 263 EHKPAN-LAVWLSMIGLAQYYKVLVDNGYENIDFITDITWEDLQEIG 308 vtllGHrkKIlssIqgLk<-* +t+lGH+kK+++++++L KIAA1306 309 ITKLGHQKKLMLAVRKLA 326 PF00536.20.fs: domain 2 of 2, from 272 to 326: score 60.6, E = 3.3e-17 *->WLesiglgqYidnFlsagyidgdtllqlteeDLedlGvtllGHrkKI WL igl+qY + + +gy ++d ++ +t+eDL+++G+t+lGH+kK+ KIAA1306 272 WLSMIGLAQYYKVLVDNGYENIDFITDITWEDLQEIGITKLGHQKKL 318 lssIqgLk<-* ++++++L KIAA1306 319 MLAVRKLA 326 //