Gene/Protein Characteristic Table for KIAA1122
Order Kazusa clone(s) from : Japan || Other countries
Product ID ORK01153
Accession No AB032948
Description SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1, transcript variant 1
Clone name hj01698
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (4906 bp)
Predicted protein sequence (1040 aa)
Flexi ORF Clone FXC01153
Source Human adult brain
Rouge ID mKIAA1122 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 4906 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 1756 bp
Genome contig ID gi89161207f_95248520
PolyA signal sequence
(AATAAA,-21)
+----*----+----*----+----*----+----
TATGTCTTGGGCTTAATAAAAATATTTGTGATCAT
Flanking genome sequence
(182946 - 182995)
----+----*----+----*----+----*----+----*----+----*
AAGTTGTATTTTCACACCCTTTTTAATAGTTTCTAACCCTTCCTCCTCCT

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 4 f 95347896 95431464 24 100.0 Perfect prediction
Features of the protein sequence
Description

Length: 1040 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
EAX06051 0 100.0 SWI/SNF-related...
Homo sapiens
EAX06050 0 99.8 SWI/SNF-related...
Homo sapiens
AAH45534 0 99.6 SWI/SNF-related...
Homo sapiens
Q9H4L7 0 99.7 SWI/SNF-related...
Homo sapiens
XP_001251200 0 96.8 similar to SWI/...
Bos taurus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB002307 3.2e-18 29.5 KIAA0309
AB033085 3.3e-18 26.0 KIAA1259
AB040931 1.1e-15 27.0 KIAA1498
AB046784 4.7e-15 25.6 KIAA1564
AB007913 1.5e-14 41.6 KIAA0444
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR000330 512 802 PF00176 SNF2-related
IPR001650 903 981 PF00271 Helicase
HMMSmart IPR011545 505 699 SM00487 DEAD/DEAH box helicase
IPR001650 898 981 SM00490 Helicase
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f GTTTATTACTGCCACATCTCC
Primer_r GACCTATTTCCATGCAGTACC
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 4
Experimental conditions
Panel name unigene
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
Order Kazusa clone(s) from : Japan || Other countries
Back to the HUGE Protein Database homepage
Send a message to office AT kazusa.or.jp