Gene/Protein Characteristic Table for KIAA1259
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Product ID ORK00785
Accession No AB033085
Description INO80 complex subunit, transcript variant 1
Clone name hh15706
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (5979 bp)
Predicted protein sequence (1561 aa)
Flexi ORF Clone FXC00785
Source Human adult brain
Rouge ID mKIAA1259 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 5979 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 1095 bp
Genome contig ID gi51511731r_38958383
PolyA signal sequence
(AATAAA,-18)
+----*----+----*----+----*----+----
TGGATAAAAAAATCTTAAATAAAATGGAGTGAGAT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AATTTTATGTAAATTGAGGTGTCTGTGGTCTTTGCAGCTGCCCCTCCTTG

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 15 r 39058383 39195632 37 99.8 Perfect prediction
Features of the protein sequence
Description

Length: 1561 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q9ULG1 0 100.0 Putative DNA he...
Homo sapiens
XP_510320 0 99.9 INO80 complex h...
Pan troglodytes
XP_849183 0 98.3 similar to yeas...
Canis lupus fam...
XP_001503533 0 97.8 INO80 complex h...
Equus caballus
XP_874470 0 97.6 similar to Puta...
Bos taurus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB002307 5.4e-20 45.1 KIAA0309
AB007913 4.9e-15 47.6 KIAA0444
AB040931 6.4e-15 27.6 KIAA1498
AB032948 3.7e-14 25.8 KIAA1122
AB002306 1.1e-13 24.5 KIAA0308
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR000330 526 827 PF00176 SNF2-related
IPR001650 1141 1219 PF00271 DNA/RNA helicase
HMMSmart IPR014001 519 717 SM00487 DEAD-like helicases
IPR001650 1136 1219 SM00490 DNA/RNA helicase
ProfileScan IPR014021 535 706 PS51192 Helicase
IPR001650 1110 1265 PS51194 DNA/RNA helicase
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f TGAGTCAGAAGTGGAAATGTC
Primer_r TGGCTATACAGTTCACTTGAG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 15
Experimental conditions
Panel name unigene
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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