# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/hj01698.fasta.nr -Q ../query/KIAA1122.ptfa /cdna2/lib/nr/nr 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1122, 1040 aa
 vs /cdna2/lib/nr/nr library

3189105952 residues in 9321606 sequences
 statistics sampled from 60000 to 9313323 sequences
  Expectation_n fit: rho(ln(x))= 5.7400+/-0.000188; mu= 11.3898+/- 0.011
 mean_var=90.2831+/-17.674, 0's: 23 Z-trim: 55  B-trim: 348 in 1/65
 Lambda= 0.134980

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(9321606)
gi|119626456|gb|EAX06051.1| SWI/SNF-related, matri (1028) 6713 1318.2       0
gi|119626455|gb|EAX06050.1| SWI/SNF-related, matri (1026) 6689 1313.5       0
gi|28278128|gb|AAH45534.1| SWI/SNF-related, matrix (1028) 6688 1313.3       0
gi|29428005|sp|Q9H4L7.1|SMRCD_HUMAN RecName: Full= (1026) 6684 1312.5       0
gi|119893620|ref|XP_001251200.1| PREDICTED: simila (1029) 6535 1283.5       0
gi|194208967|ref|XP_001497269.2| PREDICTED: simila (1029) 6534 1283.3       0
gi|74001934|ref|XP_535658.2| PREDICTED: similar to (1025) 6497 1276.1       0
gi|164607171|ref|NP_001101334.2| SWI/SNF-related,  (1024) 6199 1218.1       0
gi|50866|emb|CAA49560.1| enhancer-trap-locus-1 [Mu (1136) 6156 1209.7       0
gi|29427670|sp|Q04692.2|SMRCD_MOUSE RecName: Full= (1021) 6137 1206.0       0
gi|119626454|gb|EAX06049.1| SWI/SNF-related, matri ( 911) 5942 1168.0       0
gi|114595206|ref|XP_001163635.1| PREDICTED: SWI/SN ( 891) 5820 1144.2       0
gi|67970134|dbj|BAE01411.1| unnamed protein produc ( 889) 5762 1132.9       0
gi|149701562|ref|XP_001497332.1| PREDICTED: simila ( 892) 5708 1122.4       0
gi|126330702|ref|XP_001365797.1| PREDICTED: simila (1030) 5504 1082.7       0
gi|148666356|gb|EDK98772.1| SWI/SNF-related, matri ( 866) 5175 1018.6       0
gi|27502706|gb|AAH42442.1| Smarcad1 protein [Mus m ( 836) 5134 1010.6       0
gi|149638070|ref|XP_001509622.1| PREDICTED: simila ( 872) 4600 906.6       0
gi|14042204|dbj|BAB55150.1| unnamed protein produc ( 702) 4583 903.2       0
gi|74144080|dbj|BAE22146.1| unnamed protein produc ( 760) 4470 881.3       0
gi|118090021|ref|XP_420485.2| PREDICTED: similar t ( 969) 4396 866.9       0
gi|149037041|gb|EDL91602.1| SWI/SNF-related, matri ( 729) 4297 847.6       0
gi|148666355|gb|EDK98771.1| SWI/SNF-related, matri (1032) 4235 835.6       0
gi|58618908|gb|AAH89242.1| SWI/SNF-related, matrix (1003) 4195 827.8       0
gi|221043716|dbj|BAH13535.1| unnamed protein produ ( 596) 3907 771.5       0
gi|8977885|emb|CAB95769.1| hypothetical protein [H ( 594) 3895 769.2       0
gi|224049423|ref|XP_002191909.1| PREDICTED: hypoth (1108) 3753 741.8 5.5e-211
gi|189524164|ref|XP_691636.3| PREDICTED: similar t (1011) 3037 602.3 4.8e-169
gi|47217489|emb|CAG10869.1| unnamed protein produc ( 861) 2875 570.7 1.3e-159
gi|169146048|emb|CAQ14040.1| novel protein similar ( 972) 2836 563.1 2.8e-157
gi|167860150|ref|NP_001018610.2| SWI/SNF-related,  ( 972) 2835 562.9 3.2e-157
gi|229274972|gb|EEN45800.1| hypothetical protein B ( 987) 2431 484.3 1.6e-133
gi|12224998|emb|CAC21685.1| hypothetical protein [ ( 375) 2420 481.8 3.3e-133
gi|10436220|dbj|BAB14759.1| unnamed protein produc ( 361) 2342 466.6 1.2e-128
gi|74190834|dbj|BAE28202.1| unnamed protein produc ( 424) 2336 465.5  3e-128
gi|115647222|ref|XP_797049.2| PREDICTED: similar t (1279) 2194 438.2 1.5e-119
gi|115930771|ref|XP_001182799.1| PREDICTED: simila (1302) 2194 438.2 1.5e-119
gi|215499788|gb|EEC09282.1| DNA repair and recombi ( 614) 2189 437.0 1.7e-119
gi|156220188|gb|EDO41059.1| predicted protein [Nem ( 627) 2168 432.9 2.9e-118
gi|156547006|ref|XP_001600490.1| PREDICTED: simila ( 843) 2116 422.9 4.1e-115
gi|198429753|ref|XP_002130424.1| PREDICTED: simila ( 747) 2112 422.1 6.4e-115
gi|190584963|gb|EDV25032.1| hypothetical protein T ( 678) 2088 417.4 1.5e-113
gi|110755099|ref|XP_396302.3| PREDICTED: similar t ( 830) 2080 415.9 5.2e-113
gi|91089209|ref|XP_967093.1| PREDICTED: similar to ( 871) 2078 415.5 7.1e-113
gi|194162505|gb|EDW77406.1| GK18104 [Drosophila wi ( 842) 2013 402.8 4.4e-109
gi|116283573|gb|AAH17953.1| SMARCAD1 protein [Homo ( 318) 1994 398.8 2.7e-108
gi|194106414|gb|EDW28457.1| GL19201 [Drosophila pe ( 833) 1987 397.8 1.5e-107
gi|193913651|gb|EDW12518.1| GI24344 [Drosophila mo ( 843) 1979 396.2 4.4e-107
gi|194148901|gb|EDW64599.1| GJ21604 [Drosophila vi ( 842) 1970 394.5 1.5e-106
gi|190616699|gb|EDV32223.1| GF14153 [Drosophila an ( 842) 1967 393.9 2.2e-106


>>gi|119626456|gb|EAX06051.1| SWI/SNF-related, matrix-as  (1028 aa)
 initn: 6713 init1: 6713 opt: 6713  Z-score: 7061.1  bits: 1318.2 E():    0
Smith-Waterman score: 6713;  100.000% identity (100.000% similar) in 1028 aa overlap (13-1040:1-1028)

               10        20        30        40        50        60
KIAA11 SPHPCKVVLSTNMNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGE
                   ::::::::::::::::::::::::::::::::::::::::::::::::
gi|119             MNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGE
                           10        20        30        40        

               70        80        90       100       110       120
KIAA11 VSRANTPDSDITEKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 VSRANTPDSDITEKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSN
       50        60        70        80        90       100        

              130       140       150       160       170       180
KIAA11 TVQEKTFNKDTVIIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 TVQEKTFNKDTVIIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKEL
      110       120       130       140       150       160        

              190       200       210       220       230       240
KIAA11 FPQRSDNDLLKLIESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 FPQRSDNDLLKLIESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI
      170       180       190       200       210       220        

              250       260       270       280       290       300
KIAA11 KKTRLDHGEESNESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 KKTRLDHGEESNESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALES
      230       240       250       260       270       280        

              310       320       330       340       350       360
KIAA11 LKVFAEDQDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 LKVFAEDQDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNV
      290       300       310       320       330       340        

              370       380       390       400       410       420
KIAA11 FNPKRVVEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 FNPKRVVEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCS
      350       360       370       380       390       400        

              430       440       450       460       470       480
KIAA11 QKKAQKITELRPFNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 QKKAQKITELRPFNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNK
      410       420       430       440       450       460        

              490       500       510       520       530       540
KIAA11 LTKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 LTKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGK
      470       480       490       500       510       520        

              550       560       570       580       590       600
KIAA11 TIQAIAFLAYLYQEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 TIQAIAFLAYLYQEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRF
      530       540       550       560       570       580        

              610       620       630       640       650       660
KIAA11 NIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 NIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTIN
      590       600       610       620       630       640        

              670       680       690       700       710       720
KIAA11 ANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 ANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERI
      650       660       670       680       690       700        

              730       740       750       760       770       780
KIAA11 AHAKQIIKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 AHAKQIIKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTE
      710       720       730       740       750       760        

              790       800       810       820       830       840
KIAA11 KNTEMCNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 KNTEMCNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMT
      770       780       790       800       810       820        

              850       860       870       880       890       900
KIAA11 DFELHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 DFELHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDIL
      830       840       850       860       870       880        

              910       920       930       940       950       960
KIAA11 EVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 EVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVIL
      890       900       910       920       930       940        

              970       980       990      1000      1010      1020
KIAA11 HDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 HDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDE
      950       960       970       980       990      1000        

             1030      1040
KIAA11 GDEGSMPADIATLLKTSMGL
       ::::::::::::::::::::
gi|119 GDEGSMPADIATLLKTSMGL
     1010      1020        

>>gi|119626455|gb|EAX06050.1| SWI/SNF-related, matrix-as  (1026 aa)
 initn: 6689 init1: 4987 opt: 6689  Z-score: 7035.9  bits: 1313.5 E():    0
Smith-Waterman score: 6689;  99.805% identity (99.805% similar) in 1028 aa overlap (13-1040:1-1026)

               10        20        30        40        50        60
KIAA11 SPHPCKVVLSTNMNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGE
                   ::::::::::::::::::::::::::::::::::::::::::::::::
gi|119             MNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGE
                           10        20        30        40        

               70        80        90       100       110       120
KIAA11 VSRANTPDSDITEKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 VSRANTPDSDITEKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSN
       50        60        70        80        90       100        

              130       140       150       160       170       180
KIAA11 TVQEKTFNKDTVIIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 TVQEKTFNKDTVIIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKEL
      110       120       130       140       150       160        

              190       200       210       220       230       240
KIAA11 FPQRSDNDLLKLIESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 FPQRSDNDLLKLIESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI
      170       180       190       200       210       220        

              250       260       270       280       290       300
KIAA11 KKTRLDHGEESNESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 KKTRLDHGEESNESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALES
      230       240       250       260       270       280        

              310       320       330       340       350       360
KIAA11 LKVFAEDQDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 LKVFAEDQDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNV
      290       300       310       320       330       340        

              370       380       390       400       410       420
KIAA11 FNPKRVVEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 FNPKRVVEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCS
      350       360       370       380       390       400        

              430       440       450       460       470       480
KIAA11 QKKAQKITELRPFNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 QKKAQKITELRPFNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNK
      410       420       430       440       450       460        

              490       500       510       520       530       540
KIAA11 LTKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 LTKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGK
      470       480       490       500       510       520        

              550       560       570       580       590       600
KIAA11 TIQAIAFLAYLYQEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 TIQAIAFLAYLYQEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRF
      530       540       550       560       570       580        

              610       620       630       640       650       660
KIAA11 NIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 NIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTIN
      590       600       610       620       630       640        

              670       680       690       700       710       720
KIAA11 ANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 ANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERI
      650       660       670       680       690       700        

              730       740       750       760       770       780
KIAA11 AHAKQIIKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTE
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::  :
gi|119 AHAKQIIKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNL--E
      710       720       730       740       750       760        

              790       800       810       820       830       840
KIAA11 KNTEMCNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 KNTEMCNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMT
        770       780       790       800       810       820      

              850       860       870       880       890       900
KIAA11 DFELHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 DFELHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDIL
        830       840       850       860       870       880      

              910       920       930       940       950       960
KIAA11 EVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 EVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVIL
        890       900       910       920       930       940      

              970       980       990      1000      1010      1020
KIAA11 HDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 HDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDE
        950       960       970       980       990      1000      

             1030      1040
KIAA11 GDEGSMPADIATLLKTSMGL
       ::::::::::::::::::::
gi|119 GDEGSMPADIATLLKTSMGL
       1010      1020      

>>gi|28278128|gb|AAH45534.1| SWI/SNF-related, matrix-ass  (1028 aa)
 initn: 6688 init1: 6688 opt: 6688  Z-score: 7034.8  bits: 1313.3 E():    0
Smith-Waterman score: 6688;  99.611% identity (99.903% similar) in 1028 aa overlap (13-1040:1-1028)

               10        20        30        40        50        60
KIAA11 SPHPCKVVLSTNMNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGE
                   ::::::::::::::::::::::::::::::::::::::::::::::::
gi|282             MNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGE
                           10        20        30        40        

               70        80        90       100       110       120
KIAA11 VSRANTPDSDITEKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|282 VSRANTPDSDITEKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSN
       50        60        70        80        90       100        

              130       140       150       160       170       180
KIAA11 TVQEKTFNKDTVIIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|282 TVQEKTFNKDTVIIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKEL
      110       120       130       140       150       160        

              190       200       210       220       230       240
KIAA11 FPQRSDNDLLKLIESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|282 FPQRSDNDLLKLIESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI
      170       180       190       200       210       220        

              250       260       270       280       290       300
KIAA11 KKTRLDHGEESNESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALES
       ::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::
gi|282 KKTRLDHGEESNESAESSNNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALES
      230       240       250       260       270       280        

              310       320       330       340       350       360
KIAA11 LKVFAEDQDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNV
       ::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
gi|282 LKVFAEDQDMQYASQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNV
      290       300       310       320       330       340        

              370       380       390       400       410       420
KIAA11 FNPKRVVEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCS
       :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|282 FNQKRVVEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCS
      350       360       370       380       390       400        

              430       440       450       460       470       480
KIAA11 QKKAQKITELRPFNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|282 QKKAQKITELRPFNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNK
      410       420       430       440       450       460        

              490       500       510       520       530       540
KIAA11 LTKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|282 LTKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGK
      470       480       490       500       510       520        

              550       560       570       580       590       600
KIAA11 TIQAIAFLAYLYQEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|282 TIQAIAFLAYLYQEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRF
      530       540       550       560       570       580        

              610       620       630       640       650       660
KIAA11 NIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|282 NIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTIN
      590       600       610       620       630       640        

              670       680       690       700       710       720
KIAA11 ANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|282 ANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERI
      650       660       670       680       690       700        

              730       740       750       760       770       780
KIAA11 AHAKQIIKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|282 AHAKQIIKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTE
      710       720       730       740       750       760        

              790       800       810       820       830       840
KIAA11 KNTEMCNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|282 KNTEMCNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMT
      770       780       790       800       810       820        

              850       860       870       880       890       900
KIAA11 DFELHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|282 DFELHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDIL
      830       840       850       860       870       880        

              910       920       930       940       950       960
KIAA11 EVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|282 EVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVIL
      890       900       910       920       930       940        

              970       980       990      1000      1010      1020
KIAA11 HDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDE
       :::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::
gi|282 HDIDCNPYNDKQAEDRCHRVGQTKEALVIKLISQGTIEESMLKINQQKLKLEQDMTTVDE
      950       960       970       980       990      1000        

             1030      1040
KIAA11 GDEGSMPADIATLLKTSMGL
       ::::::::::::::::::::
gi|282 GDEGSMPADIATLLKTSMGL
     1010      1020        

>>gi|29428005|sp|Q9H4L7.1|SMRCD_HUMAN RecName: Full=SWI/  (1026 aa)
 initn: 6684 init1: 4982 opt: 6684  Z-score: 7030.6  bits: 1312.5 E():    0
Smith-Waterman score: 6684;  99.708% identity (99.805% similar) in 1028 aa overlap (13-1040:1-1026)

               10        20        30        40        50        60
KIAA11 SPHPCKVVLSTNMNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGE
                   ::::::::::::::::::::::::::::::::::::::::::::::::
gi|294             MNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGE
                           10        20        30        40        

               70        80        90       100       110       120
KIAA11 VSRANTPDSDITEKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|294 VSRANTPDSDITEKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSN
       50        60        70        80        90       100        

              130       140       150       160       170       180
KIAA11 TVQEKTFNKDTVIIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|294 TVQEKTFNKDTVIIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKEL
      110       120       130       140       150       160        

              190       200       210       220       230       240
KIAA11 FPQRSDNDLLKLIESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|294 FPQRSDNDLLKLIESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI
      170       180       190       200       210       220        

              250       260       270       280       290       300
KIAA11 KKTRLDHGEESNESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|294 KKTRLDHGEESNESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALES
      230       240       250       260       270       280        

              310       320       330       340       350       360
KIAA11 LKVFAEDQDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNV
       ::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
gi|294 LKVFAEDQDMQYASQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNV
      290       300       310       320       330       340        

              370       380       390       400       410       420
KIAA11 FNPKRVVEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|294 FNPKRVVEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCS
      350       360       370       380       390       400        

              430       440       450       460       470       480
KIAA11 QKKAQKITELRPFNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|294 QKKAQKITELRPFNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNK
      410       420       430       440       450       460        

              490       500       510       520       530       540
KIAA11 LTKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|294 LTKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGK
      470       480       490       500       510       520        

              550       560       570       580       590       600
KIAA11 TIQAIAFLAYLYQEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|294 TIQAIAFLAYLYQEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRF
      530       540       550       560       570       580        

              610       620       630       640       650       660
KIAA11 NIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|294 NIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTIN
      590       600       610       620       630       640        

              670       680       690       700       710       720
KIAA11 ANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|294 ANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERI
      650       660       670       680       690       700        

              730       740       750       760       770       780
KIAA11 AHAKQIIKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTE
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::  :
gi|294 AHAKQIIKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNL--E
      710       720       730       740       750       760        

              790       800       810       820       830       840
KIAA11 KNTEMCNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|294 KNTEMCNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMT
        770       780       790       800       810       820      

              850       860       870       880       890       900
KIAA11 DFELHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|294 DFELHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDIL
        830       840       850       860       870       880      

              910       920       930       940       950       960
KIAA11 EVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|294 EVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVIL
        890       900       910       920       930       940      

              970       980       990      1000      1010      1020
KIAA11 HDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|294 HDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDE
        950       960       970       980       990      1000      

             1030      1040
KIAA11 GDEGSMPADIATLLKTSMGL
       ::::::::::::::::::::
gi|294 GDEGSMPADIATLLKTSMGL
       1010      1020      

>>gi|119893620|ref|XP_001251200.1| PREDICTED: similar to  (1029 aa)
 initn: 5677 init1: 5677 opt: 6535  Z-score: 6873.8  bits: 1283.5 E():    0
Smith-Waterman score: 6535;  96.793% identity (99.028% similar) in 1029 aa overlap (13-1040:1-1029)

               10        20        30        40        50        60
KIAA11 SPHPCKVVLSTNMNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGE
                   ::::::::::::::::::::::::::::::::::::::::::::::::
gi|119             MNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGE
                           10        20        30        40        

               70        80        90       100       110       120
KIAA11 VSRANTPDSDITEKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSN
       ::::.:::::.:::::::::::::.:.::::::::::::::::::::::::::::::::.
gi|119 VSRAGTPDSDVTEKTEDSSVPETPENDRKASISYFKNQRGIQYIDLSSDSEDVVSPNCSS
       50        60        70        80        90       100        

              130       140       150        160       170         
KIAA11 TVQEKTFNKDTVIIVSEPSEDEESQGLPTMARRND-DISELEDLSELEDLKDAKLQTLKE
       ::::: ::::::::::::::::::::::::: ::. ::::::::::::::::::::::::
gi|119 TVQEKKFNKDTVIIVSEPSEDEESQGLPTMATRNNNDISELEDLSELEDLKDAKLQTLKE
      110       120       130       140       150       160        

     180       190       200       210       220       230         
KIAA11 LFPQRSDNDLLKLIESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQS
       :::::::.::::::.::::::::::::::::::::::::::::::::::.::::::::::
gi|119 LFPQRSDSDLLKLIDSTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPFEEDEFNDDQS
      170       180       190       200       210       220        

     240       250       260       270       280       290         
KIAA11 IKKTRLDHGEESNESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALE
       .:: :::::::::::::::.:::::::::::::::::::::.::::::::::::::::::
gi|119 MKKKRLDHGEESNESAESSTNWEKQESIVLKLQKEFPNFDKEELREVLKEHEWMYTEALE
      230       240       250       260       270       280        

     300       310       320       330       340       350         
KIAA11 SLKVFAEDQDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKN
       :::::::::::::.: :: :::::::::::::::::.::::::: ::: :::::::::::
gi|119 SLKVFAEDQDMQYASPSEFPNGKEVSSRSQNYPKNAAKTKLKQKCSMKPQNGFNKKRKKN
      290       300       310       320       330       340        

     360       370       380       390       400       410         
KIAA11 VFNPKRVVEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQC
       :::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 VFNPKRVIEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQC
      350       360       370       380       390       400        

     420       430       440       450       460       470         
KIAA11 SQKKAQKITELRPFNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISN
       :::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::
gi|119 SQKKAQKITELRPFNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIKLMNKCEDISN
      410       420       430       440       450       460        

     480       490       500       510       520       530         
KIAA11 KLTKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLG
       ::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
gi|119 KLTKQVTMLTGNGGGWNTEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLG
      470       480       490       500       510       520        

     540       550       560       570       580       590         
KIAA11 KTIQAIAFLAYLYQEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIR
       :::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::
gi|119 KTIQAIAFLAYLYQEGNKGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIR
      530       540       550       560       570       580        

     600       610       620       630       640       650         
KIAA11 FNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTI
       .:::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 YNIHSRYEEYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTI
      590       600       610       620       630       640        

     660       670       680       690       700       710         
KIAA11 NANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKER
       :::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
gi|119 NANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKPADEQSIYEKER
      650       660       670       680       690       700        

     720       730       740       750       760       770         
KIAA11 IAHAKQIIKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVT
       ::::::::::::::::::::::::::::::::::::::::::::..:::::::::::.::
gi|119 IAHAKQIIKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYMNLFNRLKKSINNMVT
      710       720       730       740       750       760        

     780       790       800       810       820       830         
KIAA11 EKNTEMCNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 EKNTEMCNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVM
      770       780       790       800       810       820        

     840       850       860       870       880       890         
KIAA11 TDFELHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 TDFELHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDI
      830       840       850       860       870       880        

     900       910       920       930       940       950         
KIAA11 LEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 LEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVI
      890       900       910       920       930       940        

     960       970       980       990      1000      1010         
KIAA11 LHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVD
       :::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::
gi|119 LHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLIGQGTIEESMLKINQQKLKLEQDMTTVD
      950       960       970       980       990      1000        

    1020      1030      1040
KIAA11 EGDEGSMPADIATLLKTSMGL
       :::::::::::::::::::::
gi|119 EGDEGSMPADIATLLKTSMGL
     1010      1020         

>>gi|194208967|ref|XP_001497269.2| PREDICTED: similar to  (1029 aa)
 initn: 5708 init1: 5708 opt: 6534  Z-score: 6872.7  bits: 1283.3 E():    0
Smith-Waterman score: 6534;  97.182% identity (99.125% similar) in 1029 aa overlap (13-1040:1-1029)

               10        20        30        40        50        60
KIAA11 SPHPCKVVLSTNMNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGE
                   ::::::::::::::.:.::::::::: :::::::::::::::::::::
gi|194             MNLFNLDRFRFEKRSKVEEAPEATPQLSQPGPSSPISLSAEEENAEGE
                           10        20        30        40        

               70        80        90       100       110       120
KIAA11 VSRANTPDSDITEKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSN
       ::::.:::::::::::::::::::.:::::::::.::::::::::::::::::.:::::.
gi|194 VSRAGTPDSDITEKTEDSSVPETPENERKASISYLKNQRGIQYIDLSSDSEDVISPNCSS
       50        60        70        80        90       100        

              130       140       150        160       170         
KIAA11 TVQEKTFNKDTVIIVSEPSEDEESQGLPTMA-RRNDDISELEDLSELEDLKDAKLQTLKE
       ::::: ::.:::::::::::::::::::.:: : :.::::::::::::::::::::::::
gi|194 TVQEKKFNRDTVIIVSEPSEDEESQGLPAMAGRNNNDISELEDLSELEDLKDAKLQTLKE
      110       120       130       140       150       160        

     180       190       200       210       220       230         
KIAA11 LFPQRSDNDLLKLIESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQS
       :::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|194 LFPQRSDSDLLKLIESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQS
      170       180       190       200       210       220        

     240       250       260       270       280       290         
KIAA11 IKKTRLDHGEESNESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALE
       ::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|194 IKKKRLDHGEESNESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALE
      230       240       250       260       270       280        

     300       310       320       330       340       350         
KIAA11 SLKVFAEDQDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKN
       :::::::::::::.:::: :::::::::::::::::.::::::: ::: :::::::::::
gi|194 SLKVFAEDQDMQYASQSEFPNGKEVSSRSQNYPKNAAKTKLKQKCSMKPQNGFNKKRKKN
      290       300       310       320       330       340        

     360       370       380       390       400       410         
KIAA11 VFNPKRVVEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQC
       :::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|194 VFNPKRVIEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQC
      350       360       370       380       390       400        

     420       430       440       450       460       470         
KIAA11 SQKKAQKITELRPFNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|194 SQKKAQKITELRPFNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISN
      410       420       430       440       450       460        

     480       490       500       510       520       530         
KIAA11 KLTKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|194 KLTKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLG
      470       480       490       500       510       520        

     540       550       560       570       580       590         
KIAA11 KTIQAIAFLAYLYQEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIR
       :::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::
gi|194 KTIQAIAFLAYLYQEGNKGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIR
      530       540       550       560       570       580        

     600       610       620       630       640       650         
KIAA11 FNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTI
       .::::.::.:::::::::::::::::::::::::::::::::::::::::::::::::::
gi|194 YNIHSKYEEYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTI
      590       600       610       620       630       640        

     660       670       680       690       700       710         
KIAA11 NANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|194 NANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKER
      650       660       670       680       690       700        

     720       730       740       750       760       770         
KIAA11 IAHAKQIIKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVT
       :::::::::::::::::::::::::::::.:::::::::::::::::::::::::::.::
gi|194 IAHAKQIIKPFILRRVKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLFNRLKKSINNMVT
      710       720       730       740       750       760        

     780       790       800       810       820       830         
KIAA11 EKNTEMCNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|194 EKNTEMCNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVM
      770       780       790       800       810       820        

     840       850       860       870       880       890         
KIAA11 TDFELHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDI
       ::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
gi|194 TDFELHVLCKQYRHINNFQLDMDLILDSGKFRVLGRILSELKQKGDRVVLFSQFTMMLDI
      830       840       850       860       870       880        

     900       910       920       930       940       950         
KIAA11 LEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|194 LEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVI
      890       900       910       920       930       940        

     960       970       980       990      1000      1010         
KIAA11 LHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|194 LHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVD
      950       960       970       980       990      1000        

    1020      1030      1040
KIAA11 EGDEGSMPADIATLLKTSMGL
       :::::::::::::::::::::
gi|194 EGDEGSMPADIATLLKTSMGL
     1010      1020         

>>gi|74001934|ref|XP_535658.2| PREDICTED: similar to SWI  (1025 aa)
 initn: 5969 init1: 4001 opt: 6497  Z-score: 6833.8  bits: 1276.1 E():    0
Smith-Waterman score: 6497;  96.793% identity (98.834% similar) in 1029 aa overlap (13-1040:1-1025)

               10        20        30        40        50        60
KIAA11 SPHPCKVVLSTNMNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGE
                   ::::::::::::::.::::.:::.::::::::::::::::::::::  
gi|740             MNLFNLDRFRFEKRSKIEEVPEAAPQPSQPGPSSPISLSAEEENAE--
                           10        20        30        40        

               70        80        90       100       110       120
KIAA11 VSRANTPDSDITEKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSN
       ::::.:::::::::::::::::: .:::::::::::::::::::::::::::.::::::.
gi|740 VSRAGTPDSDITEKTEDSSVPETTENERKASISYFKNQRGIQYIDLSSDSEDIVSPNCSS
         50        60        70        80        90       100      

              130       140       150        160       170         
KIAA11 TVQEKTFNKDTVIIVSEPSEDEESQGLPTMA-RRNDDISELEDLSELEDLKDAKLQTLKE
       ::::: ::::::::::::::::::::::::. : ::::::::::::::::::::::::::
gi|740 TVQEKKFNKDTVIIVSEPSEDEESQGLPTMSGRNNDDISELEDLSELEDLKDAKLQTLKE
        110       120       130       140       150       160      

     180       190       200       210       220       230         
KIAA11 LFPQRSDNDLLKLIESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|740 LFPQRSDNDLLKLIESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQS
        170       180       190       200       210       220      

     240       250       260       270       280       290         
KIAA11 IKKTRLDHGEESNESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALE
       ::: :::::::::::::::.::::::::::::::::::::::::::::::::::::::::
gi|740 IKKKRLDHGEESNESAESSNNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALE
        230       240       250       260       270       280      

     300       310       320       330       340       350         
KIAA11 SLKVFAEDQDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKN
       :::::::::::::.:::: :::::.:::::::::::.::::::: ::: :::::::::::
gi|740 SLKVFAEDQDMQYASQSEFPNGKEASSRSQNYPKNAAKTKLKQKCSMKPQNGFNKKRKKN
        290       300       310       320       330       340      

     360       370       380       390       400       410         
KIAA11 VFNPKRVVEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQC
       :::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|740 VFNPKRVIEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQC
        350       360       370       380       390       400      

     420       430       440       450       460       470         
KIAA11 SQKKAQKITELRPFNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|740 SQKKAQKITELRPFNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISN
        410       420       430       440       450       460      

     480       490       500       510       520       530         
KIAA11 KLTKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|740 KLTKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLG
        470       480       490       500       510       520      

     540       550       560       570       580       590         
KIAA11 KTIQAIAFLAYLYQEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIR
       :::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::
gi|740 KTIQAIAFLAYLYQEGNKGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIR
        530       540       550       560       570       580      

     600       610       620       630       640       650         
KIAA11 FNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTI
       .::::.::.:::::::::::::::::::::::::::::::::::::::::::::::::::
gi|740 YNIHSKYEEYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTI
        590       600       610       620       630       640      

     660       670       680       690       700       710         
KIAA11 NANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|740 NANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKER
        650       660       670       680       690       700      

     720       730       740       750       760       770         
KIAA11 IAHAKQIIKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVT
       :::::::::::::::::::::::::::::.:::::::::::::::::::::::::::.  
gi|740 IAHAKQIIKPFILRRVKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLFNRLKKSINNI--
        710       720       730       740       750       760      

     780       790       800       810       820       830         
KIAA11 EKNTEMCNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVM
       ::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|740 EKSTEMCNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVM
          770       780       790       800       810       820    

     840       850       860       870       880       890         
KIAA11 TDFELHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|740 TDFELHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDI
          830       840       850       860       870       880    

     900       910       920       930       940       950         
KIAA11 LEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|740 LEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVI
          890       900       910       920       930       940    

     960       970       980       990      1000      1010         
KIAA11 LHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|740 LHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVD
          950       960       970       980       990      1000    

    1020      1030      1040
KIAA11 EGDEGSMPADIATLLKTSMGL
       :::::.:::::::::::::::
gi|740 EGDEGTMPADIATLLKTSMGL
         1010      1020     

>>gi|164607171|ref|NP_001101334.2| SWI/SNF-related, matr  (1024 aa)
 initn: 5201 init1: 2796 opt: 6199  Z-score: 6520.2  bits: 1218.1 E():    0
Smith-Waterman score: 6199;  92.906% identity (96.987% similar) in 1029 aa overlap (13-1040:1-1024)

               10        20        30        40        50        60
KIAA11 SPHPCKVVLSTNMNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGE
                   ::::::::::::::.::::::::.::::::::::::::::::::::::
gi|164             MNLFNLDRFRFEKRSKIEEAPEAAPQPSQPGPSSPISLSAEEENAEGE
                           10        20        30        40        

               70        80        90       100        110         
KIAA11 VSRANTPDSDITEKTEDSSVPETPDNERKASISYFKNQRGIQ-YIDLSSDSEDVVSPNCS
       ::::::::::.::::::::::: :::: :::.: :.::: :: ::::::::::: :::::
gi|164 VSRANTPDSDVTEKTEDSSVPEPPDNESKASLSCFQNQRTIQEYIDLSSDSEDV-SPNCS
       50        60        70        80        90       100        

     120       130       140       150       160       170         
KIAA11 NTVQEKTFNKDTVIIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKE
       .::::: :.::::::::::::::::. ::. .:::: :::::::::::::::::::::::
gi|164 STVQEKKFSKDTVIIVSEPSEDEESHDLPSATRRND-ISELEDLSELEDLKDAKLQTLKE
       110       120       130       140        150       160      

     180       190       200       210       220       230         
KIAA11 LFPQRSDNDLLKLIESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQS
       :::::::.::::::.:::::::::::::: :::::::::::::::::: ::::: :::::
gi|164 LFPQRSDSDLLKLIDSTSTMDGAIAAALLKFGDAGGGPRKRKLSSSSEAYEEDEANDDQS
        170       180       190       200       210       220      

     240       250       260       270       280       290         
KIAA11 IKKTRLDHGEESNESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALE
       .:: : :. ::::::::.::::::::::::::::::::::::::::::::::::::::::
gi|164 LKKPRGDRREESNESAEASSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALE
        230       240       250       260       270       280      

     300       310       320       330       340       350         
KIAA11 SLKVFAEDQDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKN
       ::::::::::.: .::::: :::::. :.::: :::.: :.:::.::: :::::::::::
gi|164 SLKVFAEDQDVQCASQSEVTNGKEVA-RNQNYSKNAAKIKMKQKISMKPQNGFNKKRKKN
        290       300       310        320       330       340     

     360       370       380       390       400       410         
KIAA11 VFNPKRVVEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQC
       :::::..:::::::::::.:::::::::: ::::::::::::::::::::::::::::.:
gi|164 VFNPKKAVEDSEYDSGSDAGSSLDEDYSSCEEVMEDGYKGKILHFLQDASIGELTLIPKC
         350       360       370       380       390       400     

     420       430       440       450       460       470         
KIAA11 SQKKAQKITELRPFNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISN
       :::::::: ::::::.::.::::::: :::::::::.:::.:::::::::::::::::::
gi|164 SQKKAQKIIELRPFNNWETLFTKMSKINGLSEDLIWNCKTVIQERDVVIRLMNKCEDISN
         410       420       430       440       450       460     

     480       490       500       510       520       530         
KIAA11 KLTKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLG
       ::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::
gi|164 KLTKQVTMLTGNGGGWNIEQPSLLNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLG
         470       480       490       500       510       520     

     540       550       560       570       580       590         
KIAA11 KTIQAIAFLAYLYQEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIR
       ::::::::::::.::::.::::::::::::::::::::::::::.:::::::::::::::
gi|164 KTIQAIAFLAYLFQEGNKGPHLIVVPASTIDNWLREVNLWCPTLNVLCYYGSQEERKQIR
         530       540       550       560       570       580     

     600       610       620       630       640       650         
KIAA11 FNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTI
       ::::..::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|164 FNIHNKYEDYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTI
         590       600       610       620       630       640     

     660       670       680       690       700       710         
KIAA11 NANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKER
       :: ::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
gi|164 NARNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKPADEQSIYEKER
         650       660       670       680       690       700     

     720       730       740       750       760       770         
KIAA11 IAHAKQIIKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVT
       :::::::::::::::::::::: ::::::.:::::::::::::: :::::::::::::  
gi|164 IAHAKQIIKPFILRRVKEEVLKLLPPKKDQIELCAMSEKQEQLYSGLFNRLKKSINNL--
         710       720       730       740       750       760     

     780       790       800       810       820       830         
KIAA11 EKNTEMCNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|164 EKNTEMCNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVM
           770       780       790       800       810       820   

     840       850       860       870       880       890         
KIAA11 TDFELHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDI
       ::::::::::::.:::..::::::::::::::.:::::::::::::::::::::::::::
gi|164 TDFELHVLCKQYQHINSYQLDMDLILDSGKFRTLGCILSELKQKGDRVVLFSQFTMMLDI
           830       840       850       860       870       880   

     900       910       920       930       940       950         
KIAA11 LEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|164 LEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVI
           890       900       910       920       930       940   

     960       970       980       990      1000      1010         
KIAA11 LHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|164 LHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVD
           950       960       970       980       990      1000   

    1020      1030      1040
KIAA11 EGDEGSMPADIATLLKTSMGL
       :.:::::::::::::::::::
gi|164 EADEGSMPADIATLLKTSMGL
          1010      1020    

>>gi|50866|emb|CAA49560.1| enhancer-trap-locus-1 [Mus mu  (1136 aa)
 initn: 5175 init1: 2776 opt: 6156  Z-score: 6474.3  bits: 1209.7 E():    0
Smith-Waterman score: 6156;  91.618% identity (96.435% similar) in 1038 aa overlap (4-1040:107-1136)

                                          10        20        30   
KIAA11                            SPHPCKVVLSTNMNLFNLDRFRFEKRNKIEEAP
                                     : .::.  :::::::::::::::.::::::
gi|508 VEAAGARCGLRGGKAGAHLCGPASSLKAVSPLRVVVPPNMNLFNLDRFRFEKRSKIEEAP
         80        90       100       110       120       130      

            40        50        60        70        80        90   
KIAA11 EATPQPSQPGPSSPISLSAEEENAEGEVSRANTPDSDITEKTEDSSVPETPDNERKASIS
       ::.:::::  ::::::::::::::::: :::::::::.::::::::::: ::::::::.:
gi|508 EAAPQPSQARPSSPISLSAEEENAEGEGSRANTPDSDVTEKTEDSSVPEPPDNERKASLS
        140       150       160       170       180       190      

           100        110       120       130       140       150  
KIAA11 YFKNQRGIQ-YIDLSSDSEDVVSPNCSNTVQEKTFNKDTVIIVSEPSEDEESQGLPTMAR
        :.:::.:: :::::::.::: :::::.::::: :.::::::::::::::::. ::...:
gi|508 CFQNQRAIQEYIDLSSDTEDV-SPNCSSTVQEKKFSKDTVIIVSEPSEDEESHDLPSVTR
        200       210        220       230       240       250     

            160       170       180       190       200       210  
KIAA11 RNDDISELEDLSELEDLKDAKLQTLKELFPQRSDNDLLKLIESTSTMDGAIAAALLMFGD
       :::. :::::::::::::::::::::::::::::.:::::::::::::::::::::::::
gi|508 RNDS-SELEDLSELEDLKDAKLQTLKELFPQRSDSDLLKLIESTSTMDGAIAAALLMFGD
          260       270       280       290       300       310    

            220       230       240       250       260       270  
KIAA11 AGGGPRKRKLSSSSEPYEEDEFNDDQSIKKTRLDHGEESNESAESSSNWEKQESIVLKLQ
       ::::::::::::::   :::. :::::.:. : :.:::::::::.:::::::::::::::
gi|508 AGGGPRKRKLSSSS---EEDDVNDDQSVKQPRGDRGEESNESAEASSNWEKQESIVLKLQ
          320          330       340       350       360       370 

            280       290       300       310       320       330  
KIAA11 KEFPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDMQYVSQSEVPNGKEVSSRSQNYP
       :::::::::::::::::::::::::::::::::::::.: .::::: :::::. :.::: 
gi|508 KEFPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDVQCASQSEVTNGKEVA-RNQNYS
             380       390       400       410       420        430

            340       350       360       370       380       390  
KIAA11 KNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVVEDSEYDSGSDVGSSLDEDYSSGEEV
       ::::: :.:::.:.: ::::::::::::::::..:::::::::::.:::::::::: :::
gi|508 KNATKIKMKQKISVKPQNGFNKKRKKNVFNPKKAVEDSEYDSGSDAGSSLDEDYSSCEEV
              440       450       460       470       480       490

            400       410       420       430       440       450  
KIAA11 MEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKITELRPFNSWEALFTKMSKTNGLSED
       :::::::::::::: .::.::::::.::::::::::::::::.:::::::::: ::::::
gi|508 MEDGYKGKILHFLQVSSIAELTLIPKCSQKKAQKITELRPFNNWEALFTKMSKINGLSED
              500       510       520       530       540       550

            460       470       480       490       500       510  
KIAA11 LIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNGGGWNIEQPSILNQSLSLKPY
       :::.:::.:::::::::::::::::::::::::::::::::::: ::::.::::::::::
gi|508 LIWNCKTVIQERDVVIRLMNKCEDISNKLTKQVTMLTGNGGGWNREQPSLLNQSLSLKPY
              560       570       580       590       600       610

            520       530       540       550       560       570  
KIAA11 QKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNNGPHLIVVPASTIDNW
       :::::::::::::::::::::::::::::::::::::::.::::.:::::::::::::::
gi|508 QKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLFQEGNKGPHLIVVPASTIDNW
              620       630       640       650       660       670

            580       590       600       610       620       630  
KIAA11 LREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRL
       :::::::::.:.:::::::::::::::::::..:::::::::::::::::::::::::::
gi|508 LREVNLWCPSLNVLCYYGSQEERKQIRFNIHNKYEDYNVIVTTYNCAISSSDDRSLFRRL
              680       690       700       710       720       730

            640       650       660       670       680       690  
KIAA11 KLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFS
       ::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
gi|508 KLNYAIFDEGHMLKNMGSIRYQHLMTINARNRLLLTGTPVQNNLLELMSLLNFVMPHMFS
              740       750       760       770       780       790

            700       710       720       730       740       750  
KIAA11 SSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKEEVLKQLPPKKDRIEL
       ::::::::::::::: ::::::::::::::::::::::::::::::::: ::::::::::
gi|508 SSTSEIRRMFSSKTKPADEQSIYEKERIAHAKQIIKPFILRRVKEEVLKLLPPKKDRIEL
              800       810       820       830       840       850

            760       770       780       790       800       810  
KIAA11 CAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQLRKMANHPLLHRQYYTAEKLK
       ::::::::::: :::::::::::::  :::::::::::::::::::::::::::: ::::
gi|508 CAMSEKQEQLYSGLFNRLKKSINNL--EKNTEMCNVMMQLRKMANHPLLHRQYYTPEKLK
              860       870         880       890       900        

            820       830       840       850       860       870  
KIAA11 EMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLILDSGKFRV
       :::::::::::::::::::::::::::::::::::::::.:::..::::::::::::::.
gi|508 EMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYQHINSYQLDMDLILDSGKFRA
      910       920       930       940       950       960        

            880       890       900       910       920       930  
KIAA11 LGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNT
       ::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|508 LGCSLSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNT
      970       980       990      1000      1010      1020        

            940       950       960       970       980       990  
KIAA11 DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|508 DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLI
     1030      1040      1050      1060      1070      1080        

           1000      1010      1020      1030      1040
KIAA11 SQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIATLLKTSMGL
       ::::::::::::::::::::::::::::.:::::::::::::::::::
gi|508 SQGTIEESMLKINQQKLKLEQDMTTVDEADEGSMPADIATLLKTSMGL
     1090      1100      1110      1120      1130      

>>gi|29427670|sp|Q04692.2|SMRCD_MOUSE RecName: Full=SWI/  (1021 aa)
 initn: 5156 init1: 2776 opt: 6137  Z-score: 6455.0  bits: 1206.0 E():    0
Smith-Waterman score: 6137;  92.128% identity (96.793% similar) in 1029 aa overlap (13-1040:1-1021)

               10        20        30        40        50        60
KIAA11 SPHPCKVVLSTNMNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGE
                   ::::::::::::::.::::::::.:::::  :::::::::::::::::
gi|294             MNLFNLDRFRFEKRSKIEEAPEAAPQPSQARPSSPISLSAEEENAEGE
                           10        20        30        40        

               70        80        90       100        110         
KIAA11 VSRANTPDSDITEKTEDSSVPETPDNERKASISYFKNQRGIQ-YIDLSSDSEDVVSPNCS
        :::::::::.::::::::::: ::::::::.: :.:::.:: :::::::.::: :::::
gi|294 GSRANTPDSDVTEKTEDSSVPEPPDNERKASLSCFQNQRAIQEYIDLSSDTEDV-SPNCS
       50        60        70        80        90       100        

     120       130       140       150       160       170         
KIAA11 NTVQEKTFNKDTVIIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKE
       .::::: :.::::::::::::::::. ::...::::. ::::::::::::::::::::::
gi|294 STVQEKKFSKDTVIIVSEPSEDEESHDLPSVTRRNDS-SELEDLSELEDLKDAKLQTLKE
       110       120       130       140        150       160      

     180       190       200       210       220       230         
KIAA11 LFPQRSDNDLLKLIESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQS
       :::::::.::::::::::::::::::::::::::::::::::::::::   ::. :::::
gi|294 LFPQRSDSDLLKLIESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSE---EDDVNDDQS
        170       180       190       200       210          220   

     240       250       260       270       280       290         
KIAA11 IKKTRLDHGEESNESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALE
       .:. : :.:::::::::.::::::::::::::::::::::::::::::::::::::::::
gi|294 VKQPRGDRGEESNESAEASSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALE
           230       240       250       260       270       280   

     300       310       320       330       340       350         
KIAA11 SLKVFAEDQDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKN
       ::::::::::.: .::::: :::::. :.::: ::::: :.:::.:.: :::::::::::
gi|294 SLKVFAEDQDVQCASQSEVTNGKEVA-RNQNYSKNATKIKMKQKISVKPQNGFNKKRKKN
           290       300        310       320       330       340  

     360       370       380       390       400       410         
KIAA11 VFNPKRVVEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQC
       :::::..:::::::::::.:::::::::: ::::::::::::::::: .::.::::::.:
gi|294 VFNPKKAVEDSEYDSGSDAGSSLDEDYSSCEEVMEDGYKGKILHFLQVSSIAELTLIPKC
            350       360       370       380       390       400  

     420       430       440       450       460       470         
KIAA11 SQKKAQKITELRPFNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISN
       :::::::::::::::.:::::::::: :::::::::.:::.:::::::::::::::::::
gi|294 SQKKAQKITELRPFNNWEALFTKMSKINGLSEDLIWNCKTVIQERDVVIRLMNKCEDISN
            410       420       430       440       450       460  

     480       490       500       510       520       530         
KIAA11 KLTKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLG
       ::::::::::::::::: ::::.:::::::::::::::::::::::::::::::::::::
gi|294 KLTKQVTMLTGNGGGWNREQPSLLNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLG
            470       480       490       500       510       520  

     540       550       560       570       580       590         
KIAA11 KTIQAIAFLAYLYQEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIR
       ::::::::::::.::::.::::::::::::::::::::::::.:.:::::::::::::::
gi|294 KTIQAIAFLAYLFQEGNKGPHLIVVPASTIDNWLREVNLWCPSLNVLCYYGSQEERKQIR
            530       540       550       560       570       580  

     600       610       620       630       640       650         
KIAA11 FNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTI
       ::::..::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|294 FNIHNKYEDYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTI
            590       600       610       620       630       640  

     660       670       680       690       700       710         
KIAA11 NANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKER
       :: ::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
gi|294 NARNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKPADEQSIYEKER
            650       660       670       680       690       700  

     720       730       740       750       760       770         
KIAA11 IAHAKQIIKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVT
       :::::::::::::::::::::: ::::::::::::::::::::: :::::::::::::  
gi|294 IAHAKQIIKPFILRRVKEEVLKLLPPKKDRIELCAMSEKQEQLYSGLFNRLKKSINNL--
            710       720       730       740       750       760  

     780       790       800       810       820       830         
KIAA11 EKNTEMCNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVM
       :::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::
gi|294 EKNTEMCNVMMQLRKMANHPLLHRQYYTPEKLKEMSQLMLKEPTHCEANPDLIFEDMEVM
              770       780       790       800       810       820

     840       850       860       870       880       890         
KIAA11 TDFELHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDI
       ::::::::::::.:::..::::::::::::::.:::::::::::::::::::::::::::
gi|294 TDFELHVLCKQYQHINSYQLDMDLILDSGKFRALGCILSELKQKGDRVVLFSQFTMMLDI
              830       840       850       860       870       880

     900       910       920       930       940       950         
KIAA11 LEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|294 LEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVI
              890       900       910       920       930       940

     960       970       980       990      1000      1010         
KIAA11 LHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|294 LHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVD
              950       960       970       980       990      1000

    1020      1030      1040
KIAA11 EGDEGSMPADIATLLKTSMGL
       :.:::::::::::::::::::
gi|294 EADEGSMPADIATLLKTSMGL
             1010      1020 




1040 residues in 1 query   sequences
3189105952 residues in 9321606 library sequences
 Tcomplib [34.26] (2 proc)
 start: Wed Aug  5 15:56:07 2009 done: Wed Aug  5 16:06:43 2009
 Total Scan time: 1383.910 Total Display time:  0.630

Function used was FASTA [version 34.26.5 April 26, 2007]