Gene/Protein Characteristic Table for KIAA0746
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Product ID ORK05618
Accession No AB018289
Description sel-1 suppressor of lin-12-like 3 (C. elegans), transcript variant 3
Clone name hk04140
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (4086 bp)
Predicted protein sequence (1029 aa)
Flexi ORF Clone FXC05618
Source Human adult brain
Rouge ID mKIAA0746 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 4086 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Features of the protein sequence
Description

Length: 1029 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
CAH18677 0 100.0 hypothetical pr...
Homo sapiens
XP_517134 0 99.6 hypothetical pr...
Pan troglodytes
XP_001497334 0 92.0 hypothetical pr...
Equus caballus
NP_766298 0 87.7 hypothetical pr...
Mus musculus
EDL37673 0 87.7 RIKEN cDNA 2310...
Mus musculus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB037746 0.00036 23.9 KIAA1325
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR006597 586 622 PF08238 Sel1-like
IPR006597 624 659 PF08238 Sel1-like
IPR006597 660 692 PF08238 Sel1-like
IPR006597 693 731 PF08238 Sel1-like
IPR006597 844 880 PF08238 Sel1-like
HMMSmart IPR006597 467 501 SM00671 Sel1-like
IPR006597 503 539 SM00671 Sel1-like
IPR006597 586 622 SM00671 Sel1-like
IPR006597 624 659 SM00671 Sel1-like
IPR006597 660 692 SM00671 Sel1-like
IPR006597 693 731 SM00671 Sel1-like
IPR006597 732 769 SM00671 Sel1-like
IPR006597 844 880 SM00671 Sel1-like

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 1 LCSQPCVVNLEAVVSSEFRSSIP 23 SECONDARY 23
2 945 LHLRLLWGAILHSALIYFLGTFL 967 PRIMARY 23
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f GTCCTAGTGCTTCCGAATCAT
Primer_r TCCGTTGCTGCCAGTCTATTC
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 4
Experimental conditions
Panel name UniGene
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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