# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk04140.fasta.huge -Q ../query/KIAA0746.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0746, 1029 aa
 vs ./tmplib.23663 library

1986476 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 4.9796+/-0.00508; mu= 17.0620+/- 0.345
 mean_var=106.8507+/-25.563, 0's: 0 Z-trim: 1  B-trim: 0 in 0/40
 Lambda= 0.124075

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1325  ( 354 res)   fh14327                     ( 354)  167 40.9 0.00036


>>KIAA1325  ( 354 res)   fh14327                          (354 aa)
 initn:  90 init1:  90 opt: 167  Z-score: 166.8  bits: 40.9 E(): 0.00036
Smith-Waterman score: 167;  23.881% identity (55.597% similar) in 268 aa overlap (473-730:67-317)

            450       460       470       480       490       500  
KIAA07 SSIDGLHQISSIVPFLTDSSCCGYHKASYYLAVFYETGLNVPRDQLQGMLYSLVGGQGSE
                                     :: : .  :   .   .  : ..   . ..
KIAA13 WKKEKTDYTHANLVDKALQLLKERILKGDTLAYFLRGQLYFEEGWYEEALEQFEEIKEKD
         40        50        60        70        80        90      

            510       520       530        540       550       560 
KIAA07 RLSSMNLGYKHYQGIDNYPLDWELSYAYYSNIA-TKTPLDQHTLQGDQAYVETIRLKDDE
       . ....::  .:.:. .  :: : .  :...:  .  :  .: :.   ::       . .
KIAA13 HQATYQLGVMYYDGLGT-TLDAEKGVDYMKKILDSPCPKARH-LKFAAAYNLGRAYYEGK
        100       110        120       130        140       150    

             570       580       590       600          610        
KIAA07 ILKVQTKEDGDVFMWLKHEATRGNAAAQQRLAQMLFWGQQGVAKNP---EAAIEWYAK--
        .: ...:...  .::   :  ::  :. .  .::  :    .:.:   : :. :...  
KIAA13 GVK-RSNEEAER-LWLI-AADNGNPKASVKAQSML--GLYYSTKEPKELEKAFYWHSEAC
           160         170       180         190       200         

          620        630       640       650       660       670   
KIAA07 --GALETEDP-ALIYDYAIVLFKGQGVKKNRRLALELMKKAASKGLHQAVNGLGWYYHKF
         : ::..   .:.: :      :::.... . ::. ...:: .:   : ..:  ::.:.
KIAA13 GNGNLESQGALGLMYLY------GQGIRQDTEAALQCLREAAERGNVYAQGNLVEYYYKM
     210       220             230       240       250       260   

           680       690       700        710       720       730  
KIAA07 KKNYAKAAKYWLKAEEMGNPDASYNLGVL-HLDGIFPGVPGRNQTLAGEYFHKAAQGGHM
       :  ..: . .   ...... :  ... .. ..   .:   ::....:. :  .  : :  
KIAA13 KF-FTKCVAF---SKRIADYDEVHDIPMIAQVTDCLPEFIGRGMAMASFYHARCLQLGLG
            270          280       290       300       310         

            740       750       760       770       780       790  
KIAA07 EGTLWCSLYYITGNLETFPRDPEKAVVWAKHVAEKNGYLGHVIRKGLNAYLEGSWHEALL
                                                                   
KIAA13 ITRDETTAKHYYSKACRLNPALADELHSLLIRQRI                         
     320       330       340       350                             




1029 residues in 1 query   sequences
1986476 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:14:25 2008 done: Thu Dec 18 15:14:26 2008
 Total Scan time:  0.660 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]