hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-11524265/chunk_1/iprscan-20080502-11524265.nocrc
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Query sequence: KIAA0746
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08238.2.fs Sel1 repeat                                    112.0    9.3e-32   8
PF08238.2.ls Sel1 repeat                                    114.9    2.1e-31   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF08238.2.fs   2/8     586   618 ..     1    54 [.    20.7  2.6e-05
PF08238.2.ls   2/7     586   622 ..     1    58 []    23.7  0.00062
PF08238.2.ls   3/7     624   659 ..     1    58 []    24.2  0.00042
PF08238.2.fs   3/8     624   659 ..     1    58 []    22.6  7.4e-06
PF08238.2.ls   4/7     660   692 ..     1    58 []    12.0     0.47
PF08238.2.fs   4/8     660   692 ..     1    58 []    10.4    0.025
PF08238.2.fs   5/8     693   731 ..     1    58 []    32.2  1.2e-08
PF08238.2.ls   5/7     693   731 ..     1    58 []    33.9  5.3e-07
PF08238.2.fs   8/8     844   880 ..     1    58 []    16.7  0.00037
PF08238.2.ls   7/7     844   880 ..     1    58 []    18.4    0.025

Alignments of top-scoring domains:
PF08238.2.fs: domain 2 of 8, from 586 to 618: score 20.7, E = 2.6e-05
                   *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA
                      a Aq +L+       ++++ G+      G  v k      ++e   A
    KIAA0746   586    AaAQQRLA-------QMLFWGQQ-----G--VAK------NPEA--A 610  

                   lkwyekAA<-*
                   ++wy k A   
    KIAA0746   611 IEWYAKGA    618  

PF08238.2.ls: domain 2 of 7, from 586 to 622: score 23.7, E = 0.00062
                   *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA
                      a Aq +L+       ++++ G+      G  v k      ++e   A
    KIAA0746   586    AaAQQRLA-------QMLFWGQQ-----G--VAK------NPEA--A 610  

                   lkwyekAAeqGn<-*
                   ++wy k A       
    KIAA0746   611 IEWYAKGALETE    622  

PF08238.2.ls: domain 3 of 7, from 624 to 659: score 24.2, E = 0.00042
                   *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA
                      +   y ++         +++G+      G  v+k      + ++  A
    KIAA0746   624    PaLIYDYA-------IVLFKGQ------G--VKK------NRRL--A 647  

                   lkwyekAAeqGn<-*
                   l++++kAA +G    
    KIAA0746   648 LELMKKAASKGL    659  

PF08238.2.fs: domain 3 of 8, from 624 to 659: score 22.6, E = 7.4e-06
                   *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA
                      +   y ++         +++G+      G  v+k      + ++  A
    KIAA0746   624    PaLIYDYA-------IVLFKGQ------G--VKK------NRRL--A 647  

                   lkwyekAAeqGn<-*
                   l++++kAA +G    
    KIAA0746   648 LELMKKAASKGL    659  

PF08238.2.ls: domain 4 of 7, from 660 to 692: score 12.0, E = 0.47
                   *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA
                       +A + LG+      y  ++            +k      +y+k  A
    KIAA0746   660    HqAVNGLGW------Y--YHK----------FKK------NYAK--A 680  

                   lkwyekAAeqGn<-*
                   +k++ kA e+Gn   
    KIAA0746   681 AKYWLKAEEMGN    692  

PF08238.2.fs: domain 4 of 8, from 660 to 692: score 10.4, E = 0.025
                   *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA
                       +A + LG+      y  ++            +k      +y+k  A
    KIAA0746   660    HqAVNGLGW------Y--YHK----------FKK------NYAK--A 680  

                   lkwyekAAeqGn<-*
                   +k++ kA e+Gn   
    KIAA0746   681 AKYWLKAEEMGN    692  

PF08238.2.fs: domain 5 of 8, from 693 to 731: score 32.2, E = 1.2e-08
                   *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA
                      ++A ynLG        l+l+G+++    G  vp +     +  +  A
    KIAA0746   693    PdASYNLG-------VLHLDGIFP----G--VPGR-----NQTL--A 719  

                   lkwyekAAeqGn<-*
                    ++++kAA+ G+   
    KIAA0746   720 GEYFHKAAQGGH    731  

PF08238.2.ls: domain 5 of 7, from 693 to 731: score 33.9, E = 5.3e-07
                   *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA
                      ++A ynLG        l+l+G+++    G  vp +     +  +  A
    KIAA0746   693    PdASYNLG-------VLHLDGIFP----G--VPGR-----NQTL--A 719  

                   lkwyekAAeqGn<-*
                    ++++kAA+ G+   
    KIAA0746   720 GEYFHKAAQGGH    731  

PF08238.2.fs: domain 8 of 8, from 844 to 880: score 16.7, E = 0.00037
                   *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA
                      + A++++G        ly++G  +         +      D+e+  +
    KIAA0746   844    SfAYLKMG-------DLYYYGHQN-------QSQ------DLEL--S 868  

                   lkwyekAAeqGn<-*
                   ++ y +AA  G+   
    KIAA0746   869 VQMYAQAALDGD    880  

PF08238.2.ls: domain 7 of 7, from 844 to 880: score 18.4, E = 0.025
                   *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA
                      + A++++G        ly++G  +         +      D+e+  +
    KIAA0746   844    SfAYLKMG-------DLYYYGHQN-------QSQ------DLEL--S 868  

                   lkwyekAAeqGn<-*
                   ++ y +AA  G+   
    KIAA0746   869 VQMYAQAALDGD    880  

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