PABPC3 ORF clone pFN21AE5715

KOP
KOP HaloTag ORF List Flexi search

Halotag ORF Clone pFN21AE5715

How to Order Order Information

Clone info.

Species

human

Clone Name

pFN21AE5715 Sequence (with vector) Restriction Map

Product ID

FHC09215

ORF Sequence

DNA sequence (1893 bp)
Protein sequence (631 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

Gene

KIEE5715

Symbol

PABPC3

Alias : PABP3, PABPL3, tPABP

Description

poly(A) binding protein, cytoplasmic 3

Original Clone ID

oc95715

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 1893 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 631 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS9311.1 8.8e-140 100.0 PABPC3 CCDS6289.1 2.6e-128 92.0 PABPC1 CCDS44114.1 1.2e-97 73.2 PABPC4 CCDS438.1 7.8e-79 71.7 PABPC4 CCDS44115.1 1.2e-78 70.3 PABPC4 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR000504 13 83 PF00076 RNA recognition motif domain IPR000504 101 168 PF00076 RNA recognition motif domain IPR000504 193 261 PF00076 RNA recognition motif domain IPR000504 296 363 PF00076 RNA recognition motif domain IPR002004 539 609 PF00658 Polyadenylate-binding protein/Hyperplastic disc protein HMMSmart IPR000504 12 85 SM00360 RNA recognition motif domain IPR003954 100 171 SM00361 RNA recognition motif domain IPR000504 100 171 SM00360 RNA recognition motif domain IPR003954 192 264 SM00361 RNA recognition motif domain IPR000504 192 264 SM00360 RNA recognition motif domain IPR003954 295 366 SM00361 RNA recognition motif domain IPR000504 295 366 SM00360 RNA recognition motif domain IPR002004 549 612 SM00517 Polyadenylate-binding protein/Hyperplastic disc protein HMMTigr IPR006515 11 610 TIGR01628 Polyadenylate binding protein ProfileScan IPR000504 11 89 PS50102 RNA recognition motif domain IPR000504 99 175 PS50102 RNA recognition motif domain IPR000504 191 268 PS50102 RNA recognition motif domain IPR000504 294 370 PS50102 RNA recognition motif domain IPR002004 537 614 PS51309 Polyadenylate-binding protein/Hyperplastic disc protein
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_112241 631 604680 100.0 100.0 XP_005250918 636 604679 92.0 100.0 NP_002559 636 604679 92.0 100.0 NP_001129126 631 603407 73.2 99.2 NP_003810 644 603407 71.7 99.2 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AE5715 Download

>KIEE5715  1893 bp
ATGAACCCCAGCACCCCCAGCTACCCAACGGCCTCGCTCTACGTGGGGGACCTCCACCCC
GACGTGACTGAGGCGATGCTCTACGAGAAGTTCAGCCCGGCAGGGCCCATCCTCTCCATC
CGGATCTGCAGGGACTTGATCACCAGCGGCTCCTCCAACTACGCGTATGTGAACTTCCAG
CATACGAAGGACGCGGAGCATGCTCTGGACACCATGAATTTTGATGTTATAAAGGGCAAG
CCAGTACGCATCATGTGGTCTCAGCGTGATCCATCACTTCGAAAAAGTGGAGTGGGCAAC
ATATTCGTTAAAAATCTGGATAAGTCCATTAATAATAAAGCACTGTATGATACAGTTTCT
GCTTTTGGTAACATCCTTTCGTGTAACGTGGTTTGTGATGAAAATGGTTCCAAGGGTTAT
GGATTTGTACACTTTGAGACACACGAAGCAGCTGAAAGAGCTATTAAAAAAATGAACGGA
ATGCTCCTAAATGGTCGCAAAGTATTTGTTGGACAATTTAAGTCTCGTAAAGAACGAGAA
GCTGAACTTGGAGCTAGGGCAAAAGAGTTCCCCAATGTTTACATCAAGAATTTTGGAGAA
GACATGGATGATGAGCGCCTTAAGGATCTCTTTGGCAAGTTCGGGCCCGCCTTAAGTGTG
AAAGTAATGACCGATGAAAGTGGAAAATCCAAAGGATTTGGATTTGTAAGCTTTGAAAGG
CATGAAGATGCACAGAAAGCTGTAGATGAGATGAATGGAAAGGAGCTCAATGGAAAACAA
ATTTACGTTGGTCGAGCTCAGAAAAAAGTGGAACGGCAGACGGAACTTAAGCGCACATTT
GAACAGATGAAGCAAGATAGGATCACCAGATACCAGGTTGTTAATCTTTATGTGAAAAAT
CTTGATGATGGTATTGATGATGAACGTCTCCGGAAAGCGTTTTCTCCATTTGGTACAATC
ACTAGTGCAAAGGTTATGATGGAAGGTGGTCGCAGCAAAGGGTTTGGTTTTGTATGTTTC
TCCTCCCCAGAAGAAGCCACTAAAGCAGTTACAGAAATGAACGGTAGAATTGTGGCCACA
AAGCCATTGTATGTAGCTTTAGCTCAGCGCAAAGAAGAGCGCCAGGCTTACCTCACTAAC
GAGTATATGCAGAGAATGGCAAGTGTACGAGCTGTGCCCAACCAGCGAGCACCTCCTTCA
GGTTACTTCATGACAGCTGTCCCGCAGACTCAGAACCATGCTGCATACTATCCTCCTAGC
CAAATTGCTCGACTAAGACCAAGTCCTCGCTGGACTGCTCAGGGTGCCAGACCTCATCCA
TTCCAAAATAAGCCCAGTGCTATCCGCCCAGGTGCTCCTAGAGTACCATTTAGTACTATG
AGACCAGCTTCTTCACAGGTTCCACGAGTCATGTCAACGCAGCGTGTTGCTAACACATCA
ACACAGACAGTGGGTCCACGTCCTGCAGCTGCTGCTGCTGCTGCAGCTACCCCTGCTGTG
CGCACGGTTCCACGGTATAAATATGCTGCGGGAGTTCGCAATCCTCAGCAACATCGTAAT
GCACAGCCACAAGTTACAATGCAACAGCTTGCTGTTCATGTACAAGGTCAGGAAACTTTG
ACTGCCTCCAGGTTGGCATCTGCCCCTCCTCAAAAGCAAAAGCAAATGTTAGGTGAACGG
CTCTTTCCTCTTATTCAAGCCATGCACCCTACTCTTGCTGGGAAAATCACTGGCATGTTG
TTGGAGATTGATAATTCAGAACTTCTTTATATGCTCGAGTCTCCAGAGTCACTCCGTTCT
AAGGTTGATGAAGCTGTAGCTGTACTACAAGCCCACCAAGCTAAAGAGGCTACCCAGAAA
GCAGTTAACAGTGCTACCGGTGTTCCAACTGTT

ORF Protein

Cloned ORF protein sequence for pFN21AE5715 Download

>KIEE5715  631 aa
MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQ
HTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVS
AFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKERE
AELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKN
LDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQNHAAYYPPS
QIARLRPSPRWTAQGARPHPFQNKPSAIRPGAPRVPFSTMRPASSQVPRVMSTQRVANTS
TQTVGPRPAAAAAAAATPAVRTVPRYKYAAGVRNPQQHRNAQPQVTMQQLAVHVQGQETL
TASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRS
KVDEAVAVLQAHQAKEATQKAVNSATGVPTV

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AE5715 Download

>pFN21AE5715  6598 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGAACCCCAGCACCCCCAGCTACCCAACGGCCTC
GCTCTACGTGGGGGACCTCCACCCCGACGTGACTGAGGCGATGCTCTACGAGAAGTTCAG
CCCGGCAGGGCCCATCCTCTCCATCCGGATCTGCAGGGACTTGATCACCAGCGGCTCCTC
CAACTACGCGTATGTGAACTTCCAGCATACGAAGGACGCGGAGCATGCTCTGGACACCAT
GAATTTTGATGTTATAAAGGGCAAGCCAGTACGCATCATGTGGTCTCAGCGTGATCCATC
ACTTCGAAAAAGTGGAGTGGGCAACATATTCGTTAAAAATCTGGATAAGTCCATTAATAA
TAAAGCACTGTATGATACAGTTTCTGCTTTTGGTAACATCCTTTCGTGTAACGTGGTTTG
TGATGAAAATGGTTCCAAGGGTTATGGATTTGTACACTTTGAGACACACGAAGCAGCTGA
AAGAGCTATTAAAAAAATGAACGGAATGCTCCTAAATGGTCGCAAAGTATTTGTTGGACA
ATTTAAGTCTCGTAAAGAACGAGAAGCTGAACTTGGAGCTAGGGCAAAAGAGTTCCCCAA
TGTTTACATCAAGAATTTTGGAGAAGACATGGATGATGAGCGCCTTAAGGATCTCTTTGG
CAAGTTCGGGCCCGCCTTAAGTGTGAAAGTAATGACCGATGAAAGTGGAAAATCCAAAGG
ATTTGGATTTGTAAGCTTTGAAAGGCATGAAGATGCACAGAAAGCTGTAGATGAGATGAA
TGGAAAGGAGCTCAATGGAAAACAAATTTACGTTGGTCGAGCTCAGAAAAAAGTGGAACG
GCAGACGGAACTTAAGCGCACATTTGAACAGATGAAGCAAGATAGGATCACCAGATACCA
GGTTGTTAATCTTTATGTGAAAAATCTTGATGATGGTATTGATGATGAACGTCTCCGGAA
AGCGTTTTCTCCATTTGGTACAATCACTAGTGCAAAGGTTATGATGGAAGGTGGTCGCAG
CAAAGGGTTTGGTTTTGTATGTTTCTCCTCCCCAGAAGAAGCCACTAAAGCAGTTACAGA
AATGAACGGTAGAATTGTGGCCACAAAGCCATTGTATGTAGCTTTAGCTCAGCGCAAAGA
AGAGCGCCAGGCTTACCTCACTAACGAGTATATGCAGAGAATGGCAAGTGTACGAGCTGT
GCCCAACCAGCGAGCACCTCCTTCAGGTTACTTCATGACAGCTGTCCCGCAGACTCAGAA
CCATGCTGCATACTATCCTCCTAGCCAAATTGCTCGACTAAGACCAAGTCCTCGCTGGAC
TGCTCAGGGTGCCAGACCTCATCCATTCCAAAATAAGCCCAGTGCTATCCGCCCAGGTGC
TCCTAGAGTACCATTTAGTACTATGAGACCAGCTTCTTCACAGGTTCCACGAGTCATGTC
AACGCAGCGTGTTGCTAACACATCAACACAGACAGTGGGTCCACGTCCTGCAGCTGCTGC
TGCTGCTGCAGCTACCCCTGCTGTGCGCACGGTTCCACGGTATAAATATGCTGCGGGAGT
TCGCAATCCTCAGCAACATCGTAATGCACAGCCACAAGTTACAATGCAACAGCTTGCTGT
TCATGTACAAGGTCAGGAAACTTTGACTGCCTCCAGGTTGGCATCTGCCCCTCCTCAAAA
GCAAAAGCAAATGTTAGGTGAACGGCTCTTTCCTCTTATTCAAGCCATGCACCCTACTCT
TGCTGGGAAAATCACTGGCATGTTGTTGGAGATTGATAATTCAGAACTTCTTTATATGCT
CGAGTCTCCAGAGTCACTCCGTTCTAAGGTTGATGAAGCTGTAGCTGTACTACAAGCCCA
CCAAGCTAAAGAGGCTACCCAGAAAGCAGTTAACAGTGCTACCGGTGTTCCAACTGTTGT
TTAAACGAATTCGGGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAG
CTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGC
AATAACTAGCATAACCCCTTGGGGCGGCCGCTTCGAGCAGACATGATAAGATACATTGAT
GAGTTTGGACAAACCACAACTAGAATGCAGTGAAAAAAATGCTTTATTTGTGAAATTTGT
GATGCTATTGCTTTATTTGTAACCATTATAAGCTGCAATAAACAAGTTAACAACAACAAT
TGCATTCATTTTATGTTTCAGGTTCAGGGGGAGATGTGGGAGGTTTTTTTAAGCAAGTAA
AACCTCTACAAATGTGGTAAAATCGAATTCTAATGGATCCTCTTTGCGCTTGCGTTTTCC
CTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTG
GCTTTCTACGTAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAATGTGCGCGGA
ACCCCTATTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCATGAGACAATAA
CCCTGATAAATGCTTCAATAATATTGAAAAAGGAAGAGTATGAGTATTCAACATTTCCGT
GTCGCCCTTATTCCCTTTTTTGCGGCATTTTGCCTTCCTGTTTTTGCTCACCCAGAAACG
CTGGTGAAAGTAAAAGATGCTGAAGATCAGTTGGGTGCACGAGTGGGTTACATCGAACTG
GATCTCAACAGCGGTAAGATCCTTGAGAGTTTTCGCCCCGAAGAACGTTTTCCAATGATG
AGCACTTTCAAAGTTCTGCTATGTGGCGCGGTATTATCCCGTATTGACGCCGGGCAAGAG
CAACTCGGTCGCCGCATACACTATTCTCAGAATGACTTGGTTGAGTACTCACCAGTCACA
GAAAAGCATCTTACGGATGGCATGACAGTAAGAGAATTATGCAGTGCTGCCATAACCATG
AGTGATAACACTGCGGCCAACTTACTTCTGACAACTATCGGAGGACCGAAGGAGCTAACC
GCTTTTTTGCACAACATGGGGGATCATGTAACTCGCCTTGATCGTTGGGAACCGGAGCTG
AATGAAGCCATACCAAACGACGAGCGTGACACCACGATGCCTGTAGCAATGGCAACAACG
TTGCGCAAACTATTAACTGGCGAACTACTTACTCTAGCTTCCCGGCAACAATTAATAGAC
TGGATGGAGGCGGATAAAGTTGCAGGACCACTTCTGCGCTCGGCCCTTCCGGCTGGCTGG
TTTATTGCTGATAAATCTGGAGCCGGTGAGCGTGGGTCTCGCGGTATCATTGCAGCACTG
GGGCCAGATGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACT
ATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAA
TTCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATAC
GGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAA
AGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTG
ACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAA
GATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGC
TTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCAC
GCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAAC
CCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGG
TAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGT
ATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGA
CAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCT
CTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGA
TTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACG
CTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCT
TCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTG
GGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTG
TACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGT
TTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTT
TTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCC
ATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCT