NXF5 ORF clone pFN21AE5542

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KOP HaloTag ORF List Flexi search

Halotag ORF Clone pFN21AE5542

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Clone info.

Species

human

Clone Name

pFN21AE5542 Sequence (with vector) Restriction Map

Product ID

FHC27447

ORF Sequence

DNA sequence (1095 bp)
Protein sequence (365 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

Gene

KIEE5542

Symbol

NXF5

Description

nuclear RNA export factor 5, transcript variant 1

Original Clone ID

oc95542

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 1095 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 365 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS14491.2 1.3e-143 100.0 NXF5 CCDS43979.1 2.9e-104 81.5 NXF2B CCDS14497.1 2.9e-104 81.5 NXF2 CCDS8037.1 4.6e-67 54.7 NXF1 CCDS44629.1 1.6e-54 61.5 NXF1 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition BlastProDom IPR015245 1 80 PD043466 Tap HMMPfam NULL 7 93 PF09162 NULL ProfileScan IPR001611 160 181 PS51450 Leucine-rich repeat IPR001611 186 207 PS51450 Leucine-rich repeat IPR001611 210 231 PS51450 Leucine-rich repeat
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_116564 365 300319 100.0 100.0 NP_071336 626 300315 81.5 96.2 NP_006353 619 602647 54.7 95.1 NP_071335 531 300316 42.8 96.2 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AE5542 Download

>KIEE5542  1095 bp
ATGAGGCGGAACACACAAGATGAAAACATGAGGAAATGGTTCAAGGTCACAATTCCTTAT
GGGATAAAGTATGACAAGGCATGGCTAATGAATTCAATCCAGAGCAATTGCAGTGTCCCC
TTCACTCCGGTTGATTTCCACTACATCCGAAATCGGGCATGCTTCTTTGTCCAGGTTGCT
AGTGCTGCCTCTGCATTGAAGGATGTCAGTTATAAGATTTATGATGATGAGAACCAAAAG
ATATGTATATTTGTCAGTCATTTTACTGCGCCCTACTCTGTGAAGAATAAGTTGAAGCCA
GGCCAAATGGAGATGCTAAAGCTGACCATGAACAAACGGTACAATGTCTCCCAGCAAGCT
CTTGATCTCCAGAATCTCCGCTTTGACCCAGACTTGATGGGCCGTGACATTGATATAATC
CTGAATCGAAGAAACTGCATGGCTGCCACCCTGAAGATCACTGAAAGAAATTTCCCTGAG
CTGTTGTCTTTGAACTTGTGCAACAACAAACTGTACCAGCTGGATGGCCTTTCTGACATT
ACAGAGAAGGCTCCCAAAGTCAAGACCCTGAATCTCTCCAAAAATAAGCTGGAGTCGGCG
TGGGAGTTGGGCAAGGTGAAAGGGCTGAAGCTCGAAGAGCTATGGCTAGAAGGGAACCCG
TTGTGCAGCACCTTCTCGGACCAGTCTGCCTATGTAAGTGCCATCCGGGATTGTTTCCCC
AAGTTGTTACGCCTGGACGGCCGAGAGTTATCCGCACCAGTGATTGTTGACATTGACAGC
TCTGAGACAATGAAACCCTGCAAGGAAAACTTTACTGGATCTGAGACCCTAAAGCATTTA
GTCCTGCAATTCCTGCAGCAGAGCAACTTGTGCAAGTACTTCAAGGATAGCAGGAATATA
AAAATTCTCAAAGACCCCTACCTGCAGAGGAAGCTGCTAAAGCACACAAAATGTCCACGA
AACGTGGACTCCCTCAGTGCATTGCCTGAAACTCAGCATGACTTCACCTCCATCCTGGTG
GACATGTGGTACCAGACCGTGAACACCTGCTTCCTCCCTCGGGCAGGCCCAGAGAGCCAG
AGCCTAAGACCACTC

ORF Protein

Cloned ORF protein sequence for pFN21AE5542 Download

>KIEE5542  365 aa
MRRNTQDENMRKWFKVTIPYGIKYDKAWLMNSIQSNCSVPFTPVDFHYIRNRACFFVQVA
SAASALKDVSYKIYDDENQKICIFVSHFTAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQA
LDLQNLRFDPDLMGRDIDIILNRRNCMAATLKITERNFPELLSLNLCNNKLYQLDGLSDI
TEKAPKVKTLNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFP
KLLRLDGRELSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQSNLCKYFKDSRNI
KILKDPYLQRKLLKHTKCPRNVDSLSALPETQHDFTSILVDMWYQTVNTCFLPRAGPESQ
SLRPL

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AE5542 Download

>pFN21AE5542  5800 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGAGGCGGAACACACAAGATGAAAACATGAGGAA
ATGGTTCAAGGTCACAATTCCTTATGGGATAAAGTATGACAAGGCATGGCTAATGAATTC
AATCCAGAGCAATTGCAGTGTCCCCTTCACTCCGGTTGATTTCCACTACATCCGAAATCG
GGCATGCTTCTTTGTCCAGGTTGCTAGTGCTGCCTCTGCATTGAAGGATGTCAGTTATAA
GATTTATGATGATGAGAACCAAAAGATATGTATATTTGTCAGTCATTTTACTGCGCCCTA
CTCTGTGAAGAATAAGTTGAAGCCAGGCCAAATGGAGATGCTAAAGCTGACCATGAACAA
ACGGTACAATGTCTCCCAGCAAGCTCTTGATCTCCAGAATCTCCGCTTTGACCCAGACTT
GATGGGCCGTGACATTGATATAATCCTGAATCGAAGAAACTGCATGGCTGCCACCCTGAA
GATCACTGAAAGAAATTTCCCTGAGCTGTTGTCTTTGAACTTGTGCAACAACAAACTGTA
CCAGCTGGATGGCCTTTCTGACATTACAGAGAAGGCTCCCAAAGTCAAGACCCTGAATCT
CTCCAAAAATAAGCTGGAGTCGGCGTGGGAGTTGGGCAAGGTGAAAGGGCTGAAGCTCGA
AGAGCTATGGCTAGAAGGGAACCCGTTGTGCAGCACCTTCTCGGACCAGTCTGCCTATGT
AAGTGCCATCCGGGATTGTTTCCCCAAGTTGTTACGCCTGGACGGCCGAGAGTTATCCGC
ACCAGTGATTGTTGACATTGACAGCTCTGAGACAATGAAACCCTGCAAGGAAAACTTTAC
TGGATCTGAGACCCTAAAGCATTTAGTCCTGCAATTCCTGCAGCAGAGCAACTTGTGCAA
GTACTTCAAGGATAGCAGGAATATAAAAATTCTCAAAGACCCCTACCTGCAGAGGAAGCT
GCTAAAGCACACAAAATGTCCACGAAACGTGGACTCCCTCAGTGCATTGCCTGAAACTCA
GCATGACTTCACCTCCATCCTGGTGGACATGTGGTACCAGACCGTGAACACCTGCTTCCT
CCCTCGGGCAGGCCCAGAGAGCCAGAGCCTAAGACCACTCGTTTAAACGAATTCGGGCTC
GGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACA
AAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCC
TTGGGGCGGCCGCTTCGAGCAGACATGATAAGATACATTGATGAGTTTGGACAAACCACA
ACTAGAATGCAGTGAAAAAAATGCTTTATTTGTGAAATTTGTGATGCTATTGCTTTATTT
GTAACCATTATAAGCTGCAATAAACAAGTTAACAACAACAATTGCATTCATTTTATGTTT
CAGGTTCAGGGGGAGATGTGGGAGGTTTTTTTAAGCAAGTAAAACCTCTACAAATGTGGT
AAAATCGAATTCTAATGGATCCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAG
TAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTAATGGTT
TCTTAGACGTCAGGTGGCACTTTTCGGGGAAATGTGCGCGGAACCCCTATTTGTTTATTT
TTCTAAATACATTCAAATATGTATCCGCTCATGAGACAATAACCCTGATAAATGCTTCAA
TAATATTGAAAAAGGAAGAGTATGAGTATTCAACATTTCCGTGTCGCCCTTATTCCCTTT
TTTGCGGCATTTTGCCTTCCTGTTTTTGCTCACCCAGAAACGCTGGTGAAAGTAAAAGAT
GCTGAAGATCAGTTGGGTGCACGAGTGGGTTACATCGAACTGGATCTCAACAGCGGTAAG
ATCCTTGAGAGTTTTCGCCCCGAAGAACGTTTTCCAATGATGAGCACTTTCAAAGTTCTG
CTATGTGGCGCGGTATTATCCCGTATTGACGCCGGGCAAGAGCAACTCGGTCGCCGCATA
CACTATTCTCAGAATGACTTGGTTGAGTACTCACCAGTCACAGAAAAGCATCTTACGGAT
GGCATGACAGTAAGAGAATTATGCAGTGCTGCCATAACCATGAGTGATAACACTGCGGCC
AACTTACTTCTGACAACTATCGGAGGACCGAAGGAGCTAACCGCTTTTTTGCACAACATG
GGGGATCATGTAACTCGCCTTGATCGTTGGGAACCGGAGCTGAATGAAGCCATACCAAAC
GACGAGCGTGACACCACGATGCCTGTAGCAATGGCAACAACGTTGCGCAAACTATTAACT
GGCGAACTACTTACTCTAGCTTCCCGGCAACAATTAATAGACTGGATGGAGGCGGATAAA
GTTGCAGGACCACTTCTGCGCTCGGCCCTTCCGGCTGGCTGGTTTATTGCTGATAAATCT
GGAGCCGGTGAGCGTGGGTCTCGCGGTATCATTGCAGCACTGGGGCCAGATGGTAAGCCC
TCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGA
CAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAATTCGAAATGACCGACCAA
GCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAG
GGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAA
AGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATC
GACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCC
CTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCG
CCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTT
CGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACC
GCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGC
CACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAG
AGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCG
CTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAA
CCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAG
GATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACT
CACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTAT
AGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAA
AAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAG
GTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTG
CCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATT
AAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGT
ACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCT