FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5542, 365 aa 1>>>pF1KE5542 365 - 365 aa - 365 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4383+/-0.000443; mu= 16.4857+/- 0.027 mean_var=85.6317+/-18.426, 0's: 0 Z-trim(111.2): 55 B-trim: 764 in 2/53 Lambda= 0.138598 statistics sampled from 19745 (19790) to 19745 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.604), E-opt: 0.2 (0.232), width: 16 Scan time: 6.020 The best scores are: opt bits E(85289) NP_116564 (OMIM: 300319) nuclear RNA export factor ( 365) 2451 500.3 2.7e-141 NP_071336 (OMIM: 300315) nuclear RNA export factor ( 626) 1809 372.2 1.8e-102 NP_006353 (OMIM: 602647) nuclear RNA export factor ( 619) 1199 250.2 9.4e-66 NP_001074960 (OMIM: 602647) nuclear RNA export fac ( 356) 990 208.2 2.3e-53 NP_071335 (OMIM: 300316) nuclear RNA export factor ( 531) 807 171.7 3.3e-42 >>NP_116564 (OMIM: 300319) nuclear RNA export factor 5 [ (365 aa) initn: 2451 init1: 2451 opt: 2451 Z-score: 2657.6 bits: 500.3 E(85289): 2.7e-141 Smith-Waterman score: 2451; 100.0% identity (100.0% similar) in 365 aa overlap (1-365:1-365) 10 20 30 40 50 60 pF1KE5 MRRNTQDENMRKWFKVTIPYGIKYDKAWLMNSIQSNCSVPFTPVDFHYIRNRACFFVQVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_116 MRRNTQDENMRKWFKVTIPYGIKYDKAWLMNSIQSNCSVPFTPVDFHYIRNRACFFVQVA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 SAASALKDVSYKIYDDENQKICIFVSHFTAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_116 SAASALKDVSYKIYDDENQKICIFVSHFTAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 LDLQNLRFDPDLMGRDIDIILNRRNCMAATLKITERNFPELLSLNLCNNKLYQLDGLSDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_116 LDLQNLRFDPDLMGRDIDIILNRRNCMAATLKITERNFPELLSLNLCNNKLYQLDGLSDI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 TEKAPKVKTLNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_116 TEKAPKVKTLNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFP 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 KLLRLDGRELSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQSNLCKYFKDSRNI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_116 KLLRLDGRELSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQSNLCKYFKDSRNI 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 KILKDPYLQRKLLKHTKCPRNVDSLSALPETQHDFTSILVDMWYQTVNTCFLPRAGPESQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_116 KILKDPYLQRKLLKHTKCPRNVDSLSALPETQHDFTSILVDMWYQTVNTCFLPRAGPESQ 310 320 330 340 350 360 pF1KE5 SLRPL ::::: NP_116 SLRPL >>NP_071336 (OMIM: 300315) nuclear RNA export factor 2 [ (626 aa) initn: 2063 init1: 1809 opt: 1809 Z-score: 1960.6 bits: 372.2 E(85289): 1.8e-102 Smith-Waterman score: 1996; 81.5% identity (85.9% similar) in 389 aa overlap (1-351:112-498) 10 20 30 pF1KE5 MRRNTQDENMRKWFKVTIPYGIKYDKAWLM : .:::: :.:::::::::::::::::: NP_071 SIRCERRMKWHSEDEIRITTWRNRKPPERKMSQNTQDGYTRNWFKVTIPYGIKYDKAWLM 90 100 110 120 130 140 40 50 60 70 80 90 pF1KE5 NSIQSNCSVPFTPVDFHYIRNRACFFVQVASAASALKDVSYKIYDDENQKICIFVSHFTA :::::.:: ::::::::.::::::::: ::::::::::::::::::::::::::.: :: NP_071 NSIQSHCSDRFTPVDFHYVRNRACFFVQDASAASALKDVSYKIYDDENQKICIFVNHSTA 150 160 170 180 190 200 100 110 120 130 140 150 pF1KE5 PYSVKNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFDPDLMGRDIDIILNRRNCMAAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_071 PYSVKNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFDPDLMGRDIDIILNRRNCMAAT 210 220 230 240 250 260 160 170 180 190 200 210 pF1KE5 LKITERNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLESAWELGKVKGLK ::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_071 LKIIERNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLESAWELGKVKGLK 270 280 290 300 310 320 220 230 240 250 260 270 pF1KE5 LEELWLEGNPLCSTFSDQSAYVSAIRDCFPKLLRLDGRELSAPVIVDIDSSETMKPCKEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_071 LEELWLEGNPLCSTFSDQSAYVSAIRDCFPKLLRLDGRELSAPVIVDIDSSETMKPCKEN 330 340 350 360 370 380 280 290 pF1KE5 FTGSETLKHLVLQFLQQ------------------------------------SNLCKYF ::::::::::::::::: :.::::: NP_071 FTGSETLKHLVLQFLQQYYSIYDSGDRQGLLGAYHDEACFSLAIPFDPKDSAPSSLCKYF 390 400 410 420 430 440 300 310 320 330 340 350 pF1KE5 KDSRNIKILKDPYLQRKLLKHTKCPRN-VDSLSALPETQHDFTSILVDMWYQTVNT-CFL .::::.: ::::::. .::..:: :. ::::::::.::::..:::::.: :: :: NP_071 EDSRNMKTLKDPYLKGELLRRTK--RDIVDSLSALPKTQHDLSSILVDVWCQTERMLCFS 450 460 470 480 490 360 pF1KE5 PRAGPESQSLRPL NP_071 VNGVFKEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDELFVRDASPQETQSAFSIPVST 500 510 520 530 540 550 >>NP_006353 (OMIM: 602647) nuclear RNA export factor 1 i (619 aa) initn: 1262 init1: 1199 opt: 1199 Z-score: 1301.5 bits: 250.2 E(85289): 9.4e-66 Smith-Waterman score: 1316; 54.7% identity (75.5% similar) in 384 aa overlap (5-351:111-493) 10 20 30 pF1KE5 MRRNTQDENMRKWFKVTIPYGIKYDKAWLMNSIQ .:: . ..:::.::::: :::::::.. :: NP_006 RRGDTWHDRDRIHVTVRRDRAPPERGGAGTSQDGTSKNWFKITIPYGRKYDKAWLLSMIQ 90 100 110 120 130 140 40 50 60 70 80 90 pF1KE5 SNCSVPFTPVDFHYIRNRACFFVQVASAASALKDVSYKIYDDENQKICIFVSHFTAPYSV :.:::::::..::: .:: :::. ::.::::: :.::: : ::..: :... . :... NP_006 SKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKILDRENRRISIIINSSAPPHTI 150 160 170 180 190 200 100 110 120 130 140 150 pF1KE5 KNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFDPDLMGRDIDIILNRRNCMAATLKIT :.::: :.:.::: :.:::. :::::::..:: ::::....::..::::.::::::.: NP_006 LNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRII 210 220 230 240 250 260 160 170 180 190 200 210 pF1KE5 ERNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLESAWELGKVKGLKLEEL :.:.:::::::: ::.::.:: .:.:..:::..: :::: :.:.: :: :.:::::::: NP_006 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEEL 270 280 290 300 310 320 220 230 240 250 260 270 pF1KE5 WLEGNPLCSTFSDQSAYVSAIRDCFPKLLRLDGRELSAPVIVDIDSSETMKPCKENFTGS ::.:: ::.:: :::.:.::::. :::::::::.:: :. :... :. ::: .. :. NP_006 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDVEAPTTLPPCKGSYFGT 330 340 350 360 370 380 280 290 pF1KE5 ETLKHLVLQFLQQ------------------------------------SNLCKYFKDSR :.:: :::.:::: :.: .:::::: NP_006 ENLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSIPFIPQNPARSSLAEYFKDSR 390 400 410 420 430 440 300 310 320 330 340 350 pF1KE5 NIKILKDPYLQRKLLKHTKCPRNVDSLSALPETQHDFTSILVDMWYQTVNT-CFLPRAGP :.: :::: :. .:::::. : :. ::.:::: .:..::. :: . :: NP_006 NVKKLKDPTLRFRLLKHTRL-NVVAFLNELPKTQHDVNSFVVDISAQTSTLLCFSVNGVF 450 460 470 480 490 360 pF1KE5 ESQSLRPL NP_006 KEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFVRNASSEEIQRAFAMPAPTPSSSP 500 510 520 530 540 550 >>NP_001074960 (OMIM: 602647) nuclear RNA export factor (356 aa) initn: 980 init1: 980 opt: 990 Z-score: 1078.9 bits: 208.2 E(85289): 2.3e-53 Smith-Waterman score: 990; 61.5% identity (85.9% similar) in 234 aa overlap (5-238:111-344) 10 20 30 pF1KE5 MRRNTQDENMRKWFKVTIPYGIKYDKAWLMNSIQ .:: . ..:::.::::: :::::::.. :: NP_001 RRGDTWHDRDRIHVTVRRDRAPPERGGAGTSQDGTSKNWFKITIPYGRKYDKAWLLSMIQ 90 100 110 120 130 140 40 50 60 70 80 90 pF1KE5 SNCSVPFTPVDFHYIRNRACFFVQVASAASALKDVSYKIYDDENQKICIFVSHFTAPYSV :.:::::::..::: .:: :::. ::.::::: :.::: : ::..: :... . :... NP_001 SKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKILDRENRRISIIINSSAPPHTI 150 160 170 180 190 200 100 110 120 130 140 150 pF1KE5 KNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFDPDLMGRDIDIILNRRNCMAATLKIT :.::: :.:.::: :.:::. :::::::..:: ::::....::..::::.::::::.: NP_001 LNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRII 210 220 230 240 250 260 160 170 180 190 200 210 pF1KE5 ERNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLESAWELGKVKGLKLEEL :.:.:::::::: ::.::.:: .:.:..:::..: :::: :.:.: :: :.:::::::: NP_001 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEEL 270 280 290 300 310 320 220 230 240 250 260 270 pF1KE5 WLEGNPLCSTFSDQSAYVSAIRDCFPKLLRLDGRELSAPVIVDIDSSETMKPCKENFTGS ::.:: ::.:: :::.:. .. : NP_001 WLDGNSLCDTFRDQSTYIRSVVACVSPPGDLHPLGG 330 340 350 >>NP_071335 (OMIM: 300316) nuclear RNA export factor 3 [ (531 aa) initn: 710 init1: 577 opt: 807 Z-score: 878.8 bits: 171.7 E(85289): 3.3e-42 Smith-Waterman score: 922; 42.8% identity (62.6% similar) in 388 aa overlap (1-351:101-451) 10 20 30 pF1KE5 MRRNTQDENMRKWFKVTIPYGIKYDKAWLM :. : : .. .:::.:.:.::::.. ::. NP_071 ISPYNRKGSFRKQDQTHVNMEREQKPPERRMEGNMPDGTLGSWFKITVPFGIKYNEKWLL 80 90 100 110 120 130 40 50 60 70 80 90 pF1KE5 NSIQSNCSVPFTPVDFHYIRNRACFFVQVASAASALKDVSYKIYDDENQKICIFVSHFTA : ::..:::::.::.::: .: :::. :: : :::.:: ::.:..:.:: :::. NP_071 NLIQNECSVPFVPVEFHYENMHASFFVENASIAYALKNVSGKIWDEDNEKISIFVNPAGI 140 150 160 170 180 190 100 110 120 130 140 150 pF1KE5 PYSVKNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFDPDLMGRDIDIILNRRNCMAAT :. :. .:: ..:..::.::.. .:::.:::.: : : ::...:: . : :.::::. NP_071 PHFVHRELKSEKVEQIKLAMNQQCDVSQEALDIQRLPFYPDMVNRDTKMASNPRKCMAAS 200 210 220 230 240 250 160 170 180 190 200 210 pF1KE5 LKITERNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLESAWELGKVKGLK : . :.:.: ..: : :. : ::.. NP_071 LDVHEENIPTVMS------------------------------------AGEMDKWKGIE 260 270 220 230 240 250 260 270 pF1KE5 LEELWLEGNPLCSTFSDQSAYVSAIRDCFPKLLRLDGRELSAPVIVDIDSSETMKPCKEN : . .:.:.:::: :. ...: . ::::: :::.. .. .. . . :: . NP_071 PGEKCADRSPVCTTFSDTSSNINSILELFPKLLCLDGQQSPRATLCGTEAHKRLPTCKGS 280 290 300 310 320 330 280 290 pF1KE5 FTGSETLKHLVLQFLQQ------------------------------------SNLCKYF : ::: ::.:::::::: :..::.: NP_071 FFGSEMLKNLVLQFLQQYYLIYDSGDRQGLLSAYHDEACFSLSIPFNPEDSAPSSFCKFF 340 350 360 370 380 390 300 310 320 330 340 350 pF1KE5 KDSRNIKILKDPYLQRKLLKHTKCPRNVDSLSALPETQHDFTSILVDMWYQTV-NTCFLP ::::::::::::::. .:::::: ::::::::.::::..:.:::::::: :: NP_071 KDSRNIKILKDPYLRGELLKHTKLD-IVDSLSALPKTQHDLSSFLVDMWYQTEWMLCFSV 400 410 420 430 440 450 360 pF1KE5 RAGPESQSLRPL NP_071 NGVFKEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDKLFVRDTSHQGTQSALFTLVPTA 460 470 480 490 500 510 365 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 01:39:28 2016 done: Tue Nov 8 01:39:29 2016 Total Scan time: 6.020 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]