SYDE1 ORF clone pFN21AE4214

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KOP HaloTag ORF List Flexi search

Halotag ORF Clone pFN21AE4214

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Clone info.

Species

human

Clone Name

pFN21AE4214 Sequence (with vector) Restriction Map

Product ID

FHC26507

ORF Sequence

DNA sequence (2205 bp)
Protein sequence (735 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

Gene

KIEE4214

Symbol

SYDE1

Alias : 7h3, SYD1

Description

synapse defective 1, Rho GTPase, homolog 1 (C. elegans), transcript variant 1

Original Clone ID

cp94214

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 2205 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 735 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS12324.1 1.8e-126 100.0 SYDE1 CCDS74299.1 1.2e-109 90.9 SYDE1 CCDS44169.1 5.1e-23 43.9 SYDE2 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR000198 414 566 PF00620 Rho GTPase-activating protein domain HMMSmart IPR000198 411 601 SM00324 Rho GTPase-activating protein domain ProfileScan IPR000198 398 604 PS50238 Rho GTPase-activating protein domain Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AE4214 Download

>KIEE4214  2205 bp
ATGGCCGAGCCGCTACTCAGGAAAACCTTCTCCCGCCTGCGGGGCCGGGAGAAACTTCCC
CGGAAAAAGTCGGACGCCAAGGAGCGCGGCCACCCAGCCCAGCGCCCAGAGCCCAGCCCT
CCAGAGCCAGAGCCCCAGGCTCCCGAAGGGTCCCAGGCCGGAGCAGAGGGGCCCTCCAGC
CCCGAGGCATCAAGGAGCCCTGCACGGGGAGCCTACCTGCAAAGCCTGGAGCCCAGTAGC
CGCCGATGGGTGCTGGGTGGGGCCAAGCCAGCTGAGGACACCTCTTTAGGGCCTGGGGTA
CCTGGCACTGGGGAGCCCGCCGGCGAGATCTGGTACAACCCCATCCCTGAGGAAGACCCC
AGACCTCCAGCACCTGAGCCCCCGGGGCCACAGCCTGGCTCAGCTGAGTCAGAGGGCCTG
GCCCCCCAAGGTGCAGCCCCCGCCAGCCCCCCAACCAAAGCCTCCCGCACCAAGTCCCCG
GGCCCCGCCAGGCGCCTCTCCATAAAGATGAAGAAGCTGCCGGAACTGCGGCGCCGCCTG
AGCCTGCGAGGCCCCCGGGCTGGCAGGGAGCGCGAGAGGGCTGCCCCTGCGGGCTCCGTC
ATCAGCCGCTACCACCTGGACAGCAGCGTGGGGGGCCCCGGGCCGGCAGCAGGGCCTGGG
GGCACCCGGAGCCCGAGGGCCGGTTACCTCAGCGACGGGGACTCACCGGAGCGCCCAGCT
GGGCCCCCATCACCCACCTCCTTCCGGCCCTACGAGGTGGGTCCCGCAGCCCGGGCACCC
CCGGCCGCACTCTGGGGCCGCCTCAGCCTGCACCTGTACGGTCTCGGGGGGCTGCGGCCA
GCGCCGGGGGCCACCCCCAGGGACCTCTGCTGCCTACTGCAAGTGGATGGGGAGGCCAGG
GCCCGAACAGGGCCACTGCGAGGGGGGCCGGACTTCCTGCGGCTGGACCACACCTTCCAC
CTGGAGCTGGAGGCCGCCAGGCTCCTGCGCGCCCTGGTGCTTGCGTGGGACCCTGGCGTG
AGAAGGCACCGGCCCTGTGCCCAGGGCACCGTGCTGCTGCCCACGGTCTTCCGAGGGTGC
CAGGCCCAACAGCTGGCCGTGCGCCTGGAGCCTCAGGGGCTGCTGTATGCCAAGCTGACC
CTGTCGGAGCAGCAGGAAGCCCCTGCCACAGCTGAGCCCCGCGTCTTTGGGCTGCCCCTG
CCACTGCTGGTGGAGCGGGAGCGGCCCCCCGGCCAGGTGCCCCTCATCATCCAGAAGTGC
GTTGGGCAGATCGAGCGCCGAGGGCTGCGGGTAGTGGGACTGTACCGTCTTTGTGGCTCA
GCGGCAGTGAAGAAAGAGCTTCGGGATGCCTTTGAGCGGGACAGTGCAGCGGTCTGCCTA
TCTGAGGACCTGTACCCCGATATCAATGTCATCACTGGCATCCTCAAGGATTATCTTCGA
GAGTTGCCCACCCCACTCATCACCCAGCCCCTGTATAAGGTGGTACTGGAGGCCATGGCC
CGGGACCCCCCAAACAGAGTTCCCCCCACCACTGAGGGCACCCGAGGGCTCCTCAGCTGC
CTGCCAGATGTGGAAAGGGCCACGCTGACGCTTCTCCTGGACCACCTGCGCCTCGTCTCC
TCCTTCCATGCCTACAACCGCATGACCCCACAGAACTTGGCCGTGTGCTTCGGGCCTGTG
CTGCTGCCGGCACGCCAGGCGCCCACAAGGCCTCGTGCCCGCAGCTCCGGCCCAGGCCTT
GCCAGTGCAGTGGACTTCAAGCACCACATCGAGGTGCTGCACTACCTGCTGCAGTCTTGG
CCAGATCCCCGCCTGCCCCGACAATCTCCAGATGTCGCGCCTTACTTGCGACCCAAACGA
CAGCCACCTCTGCACCTGCCGCTGGCAGACCCCGAAGTGGTGACTCGGCCCCGCGGTCGA
GGAGGCCCCGAAAGCCCCCCGAGCAACCGCTACGCCGGCGACTGGAGCGTTTGCGGGCGG
GACTTCCTGCCCTGTGGGCGGGATTTCCTGTCCGGGCCAGACTACGACCACGTGACGGGC
AGTGACAGCGAGGACGAGGACGAGGAGGTCGGCGAGCCGAGGGTCACCGGTGACTTCGAA
GACGACTTCGATGCGCCCTTCAACCCGCACCTGAATCTCAAAGACTTCGACGCCCTCATC
CTGGATCTGGAGAGAGAGCTCTCCAAGCAAATCAACGTGTGCCTC

ORF Protein

Cloned ORF protein sequence for pFN21AE4214 Download

>KIEE4214  735 aa
MAEPLLRKTFSRLRGREKLPRKKSDAKERGHPAQRPEPSPPEPEPQAPEGSQAGAEGPSS
PEASRSPARGAYLQSLEPSSRRWVLGGAKPAEDTSLGPGVPGTGEPAGEIWYNPIPEEDP
RPPAPEPPGPQPGSAESEGLAPQGAAPASPPTKASRTKSPGPARRLSIKMKKLPELRRRL
SLRGPRAGRERERAAPAGSVISRYHLDSSVGGPGPAAGPGGTRSPRAGYLSDGDSPERPA
GPPSPTSFRPYEVGPAARAPPAALWGRLSLHLYGLGGLRPAPGATPRDLCCLLQVDGEAR
ARTGPLRGGPDFLRLDHTFHLELEAARLLRALVLAWDPGVRRHRPCAQGTVLLPTVFRGC
QAQQLAVRLEPQGLLYAKLTLSEQQEAPATAEPRVFGLPLPLLVERERPPGQVPLIIQKC
VGQIERRGLRVVGLYRLCGSAAVKKELRDAFERDSAAVCLSEDLYPDINVITGILKDYLR
ELPTPLITQPLYKVVLEAMARDPPNRVPPTTEGTRGLLSCLPDVERATLTLLLDHLRLVS
SFHAYNRMTPQNLAVCFGPVLLPARQAPTRPRARSSGPGLASAVDFKHHIEVLHYLLQSW
PDPRLPRQSPDVAPYLRPKRQPPLHLPLADPEVVTRPRGRGGPESPPSNRYAGDWSVCGR
DFLPCGRDFLSGPDYDHVTGSDSEDEDEEVGEPRVTGDFEDDFDAPFNPHLNLKDFDALI
LDLERELSKQINVCL

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AE4214 Download

>pFN21AE4214  6910 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGGCCGAGCCGCTACTCAGGAAAACCTTCTCCCG
CCTGCGGGGCCGGGAGAAACTTCCCCGGAAAAAGTCGGACGCCAAGGAGCGCGGCCACCC
AGCCCAGCGCCCAGAGCCCAGCCCTCCAGAGCCAGAGCCCCAGGCTCCCGAAGGGTCCCA
GGCCGGAGCAGAGGGGCCCTCCAGCCCCGAGGCATCAAGGAGCCCTGCACGGGGAGCCTA
CCTGCAAAGCCTGGAGCCCAGTAGCCGCCGATGGGTGCTGGGTGGGGCCAAGCCAGCTGA
GGACACCTCTTTAGGGCCTGGGGTACCTGGCACTGGGGAGCCCGCCGGCGAGATCTGGTA
CAACCCCATCCCTGAGGAAGACCCCAGACCTCCAGCACCTGAGCCCCCGGGGCCACAGCC
TGGCTCAGCTGAGTCAGAGGGCCTGGCCCCCCAAGGTGCAGCCCCCGCCAGCCCCCCAAC
CAAAGCCTCCCGCACCAAGTCCCCGGGCCCCGCCAGGCGCCTCTCCATAAAGATGAAGAA
GCTGCCGGAACTGCGGCGCCGCCTGAGCCTGCGAGGCCCCCGGGCTGGCAGGGAGCGCGA
GAGGGCTGCCCCTGCGGGCTCCGTCATCAGCCGCTACCACCTGGACAGCAGCGTGGGGGG
CCCCGGGCCGGCAGCAGGGCCTGGGGGCACCCGGAGCCCGAGGGCCGGTTACCTCAGCGA
CGGGGACTCACCGGAGCGCCCAGCTGGGCCCCCATCACCCACCTCCTTCCGGCCCTACGA
GGTGGGTCCCGCAGCCCGGGCACCCCCGGCCGCACTCTGGGGCCGCCTCAGCCTGCACCT
GTACGGTCTCGGGGGGCTGCGGCCAGCGCCGGGGGCCACCCCCAGGGACCTCTGCTGCCT
ACTGCAAGTGGATGGGGAGGCCAGGGCCCGAACAGGGCCACTGCGAGGGGGGCCGGACTT
CCTGCGGCTGGACCACACCTTCCACCTGGAGCTGGAGGCCGCCAGGCTCCTGCGCGCCCT
GGTGCTTGCGTGGGACCCTGGCGTGAGAAGGCACCGGCCCTGTGCCCAGGGCACCGTGCT
GCTGCCCACGGTCTTCCGAGGGTGCCAGGCCCAACAGCTGGCCGTGCGCCTGGAGCCTCA
GGGGCTGCTGTATGCCAAGCTGACCCTGTCGGAGCAGCAGGAAGCCCCTGCCACAGCTGA
GCCCCGCGTCTTTGGGCTGCCCCTGCCACTGCTGGTGGAGCGGGAGCGGCCCCCCGGCCA
GGTGCCCCTCATCATCCAGAAGTGCGTTGGGCAGATCGAGCGCCGAGGGCTGCGGGTAGT
GGGACTGTACCGTCTTTGTGGCTCAGCGGCAGTGAAGAAAGAGCTTCGGGATGCCTTTGA
GCGGGACAGTGCAGCGGTCTGCCTATCTGAGGACCTGTACCCCGATATCAATGTCATCAC
TGGCATCCTCAAGGATTATCTTCGAGAGTTGCCCACCCCACTCATCACCCAGCCCCTGTA
TAAGGTGGTACTGGAGGCCATGGCCCGGGACCCCCCAAACAGAGTTCCCCCCACCACTGA
GGGCACCCGAGGGCTCCTCAGCTGCCTGCCAGATGTGGAAAGGGCCACGCTGACGCTTCT
CCTGGACCACCTGCGCCTCGTCTCCTCCTTCCATGCCTACAACCGCATGACCCCACAGAA
CTTGGCCGTGTGCTTCGGGCCTGTGCTGCTGCCGGCACGCCAGGCGCCCACAAGGCCTCG
TGCCCGCAGCTCCGGCCCAGGCCTTGCCAGTGCAGTGGACTTCAAGCACCACATCGAGGT
GCTGCACTACCTGCTGCAGTCTTGGCCAGATCCCCGCCTGCCCCGACAATCTCCAGATGT
CGCGCCTTACTTGCGACCCAAACGACAGCCACCTCTGCACCTGCCGCTGGCAGACCCCGA
AGTGGTGACTCGGCCCCGCGGTCGAGGAGGCCCCGAAAGCCCCCCGAGCAACCGCTACGC
CGGCGACTGGAGCGTTTGCGGGCGGGACTTCCTGCCCTGTGGGCGGGATTTCCTGTCCGG
GCCAGACTACGACCACGTGACGGGCAGTGACAGCGAGGACGAGGACGAGGAGGTCGGCGA
GCCGAGGGTCACCGGTGACTTCGAAGACGACTTCGATGCGCCCTTCAACCCGCACCTGAA
TCTCAAAGACTTCGACGCCCTCATCCTGGATCTGGAGAGAGAGCTCTCCAAGCAAATCAA
CGTGTGCCTCGTTTAAACGAATTCGGGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTG
CAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTG
CCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCGGCCGCTTCGAGCAGACATGATA
AGATACATTGATGAGTTTGGACAAACCACAACTAGAATGCAGTGAAAAAAATGCTTTATT
TGTGAAATTTGTGATGCTATTGCTTTATTTGTAACCATTATAAGCTGCAATAAACAAGTT
AACAACAACAATTGCATTCATTTTATGTTTCAGGTTCAGGGGGAGATGTGGGAGGTTTTT
TTAAGCAAGTAAAACCTCTACAAATGTGGTAAAATCGAATTCTAATGGATCCTCTTTGCG
CTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGT
TTCTGCGGACTGGCTTTCTACGTAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGA
AATGTGCGCGGAACCCCTATTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTC
ATGAGACAATAACCCTGATAAATGCTTCAATAATATTGAAAAAGGAAGAGTATGAGTATT
CAACATTTCCGTGTCGCCCTTATTCCCTTTTTTGCGGCATTTTGCCTTCCTGTTTTTGCT
CACCCAGAAACGCTGGTGAAAGTAAAAGATGCTGAAGATCAGTTGGGTGCACGAGTGGGT
TACATCGAACTGGATCTCAACAGCGGTAAGATCCTTGAGAGTTTTCGCCCCGAAGAACGT
TTTCCAATGATGAGCACTTTCAAAGTTCTGCTATGTGGCGCGGTATTATCCCGTATTGAC
GCCGGGCAAGAGCAACTCGGTCGCCGCATACACTATTCTCAGAATGACTTGGTTGAGTAC
TCACCAGTCACAGAAAAGCATCTTACGGATGGCATGACAGTAAGAGAATTATGCAGTGCT
GCCATAACCATGAGTGATAACACTGCGGCCAACTTACTTCTGACAACTATCGGAGGACCG
AAGGAGCTAACCGCTTTTTTGCACAACATGGGGGATCATGTAACTCGCCTTGATCGTTGG
GAACCGGAGCTGAATGAAGCCATACCAAACGACGAGCGTGACACCACGATGCCTGTAGCA
ATGGCAACAACGTTGCGCAAACTATTAACTGGCGAACTACTTACTCTAGCTTCCCGGCAA
CAATTAATAGACTGGATGGAGGCGGATAAAGTTGCAGGACCACTTCTGCGCTCGGCCCTT
CCGGCTGGCTGGTTTATTGCTGATAAATCTGGAGCCGGTGAGCGTGGGTCTCGCGGTATC
ATTGCAGCACTGGGGCCAGATGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGG
AGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATT
AAGCATTGGTAATTCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAA
AGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAA
AAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGC
TCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGA
CAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTC
CGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTT
CTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCT
GTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTG
AGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTA
GCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCT
ACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAA
GAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTT
GCAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTA
CGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTAT
CAAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGAT
GGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGG
TAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGC
GATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGC
GCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCT
GCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGG
ATCGAGATCT