FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4214, 735 aa 1>>>pF1KE4214 735 - 735 aa - 735 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 12.5101+/-0.00105; mu= -10.7825+/- 0.064 mean_var=466.9871+/-95.027, 0's: 0 Z-trim(117.1): 105 B-trim: 0 in 0/54 Lambda= 0.059350 statistics sampled from 17652 (17753) to 17652 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.812), E-opt: 0.2 (0.545), width: 16 Scan time: 4.380 The best scores are: opt bits E(32554) CCDS12324.1 SYDE1 gene_id:85360|Hs108|chr19 ( 735) 5105 451.7 1.8e-126 CCDS74299.1 SYDE1 gene_id:85360|Hs108|chr19 ( 668) 4451 395.7 1.2e-109 CCDS44169.1 SYDE2 gene_id:84144|Hs108|chr1 (1194) 1098 108.8 5.1e-23 >>CCDS12324.1 SYDE1 gene_id:85360|Hs108|chr19 (735 aa) initn: 5105 init1: 5105 opt: 5105 Z-score: 2383.9 bits: 451.7 E(32554): 1.8e-126 Smith-Waterman score: 5105; 100.0% identity (100.0% similar) in 735 aa overlap (1-735:1-735) 10 20 30 40 50 60 pF1KE4 MAEPLLRKTFSRLRGREKLPRKKSDAKERGHPAQRPEPSPPEPEPQAPEGSQAGAEGPSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MAEPLLRKTFSRLRGREKLPRKKSDAKERGHPAQRPEPSPPEPEPQAPEGSQAGAEGPSS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 PEASRSPARGAYLQSLEPSSRRWVLGGAKPAEDTSLGPGVPGTGEPAGEIWYNPIPEEDP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 PEASRSPARGAYLQSLEPSSRRWVLGGAKPAEDTSLGPGVPGTGEPAGEIWYNPIPEEDP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 RPPAPEPPGPQPGSAESEGLAPQGAAPASPPTKASRTKSPGPARRLSIKMKKLPELRRRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 RPPAPEPPGPQPGSAESEGLAPQGAAPASPPTKASRTKSPGPARRLSIKMKKLPELRRRL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 SLRGPRAGRERERAAPAGSVISRYHLDSSVGGPGPAAGPGGTRSPRAGYLSDGDSPERPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 SLRGPRAGRERERAAPAGSVISRYHLDSSVGGPGPAAGPGGTRSPRAGYLSDGDSPERPA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 GPPSPTSFRPYEVGPAARAPPAALWGRLSLHLYGLGGLRPAPGATPRDLCCLLQVDGEAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 GPPSPTSFRPYEVGPAARAPPAALWGRLSLHLYGLGGLRPAPGATPRDLCCLLQVDGEAR 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 ARTGPLRGGPDFLRLDHTFHLELEAARLLRALVLAWDPGVRRHRPCAQGTVLLPTVFRGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 ARTGPLRGGPDFLRLDHTFHLELEAARLLRALVLAWDPGVRRHRPCAQGTVLLPTVFRGC 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE4 QAQQLAVRLEPQGLLYAKLTLSEQQEAPATAEPRVFGLPLPLLVERERPPGQVPLIIQKC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 QAQQLAVRLEPQGLLYAKLTLSEQQEAPATAEPRVFGLPLPLLVERERPPGQVPLIIQKC 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE4 VGQIERRGLRVVGLYRLCGSAAVKKELRDAFERDSAAVCLSEDLYPDINVITGILKDYLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 VGQIERRGLRVVGLYRLCGSAAVKKELRDAFERDSAAVCLSEDLYPDINVITGILKDYLR 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE4 ELPTPLITQPLYKVVLEAMARDPPNRVPPTTEGTRGLLSCLPDVERATLTLLLDHLRLVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 ELPTPLITQPLYKVVLEAMARDPPNRVPPTTEGTRGLLSCLPDVERATLTLLLDHLRLVS 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE4 SFHAYNRMTPQNLAVCFGPVLLPARQAPTRPRARSSGPGLASAVDFKHHIEVLHYLLQSW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 SFHAYNRMTPQNLAVCFGPVLLPARQAPTRPRARSSGPGLASAVDFKHHIEVLHYLLQSW 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE4 PDPRLPRQSPDVAPYLRPKRQPPLHLPLADPEVVTRPRGRGGPESPPSNRYAGDWSVCGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 PDPRLPRQSPDVAPYLRPKRQPPLHLPLADPEVVTRPRGRGGPESPPSNRYAGDWSVCGR 610 620 630 640 650 660 670 680 690 700 710 720 pF1KE4 DFLPCGRDFLSGPDYDHVTGSDSEDEDEEVGEPRVTGDFEDDFDAPFNPHLNLKDFDALI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 DFLPCGRDFLSGPDYDHVTGSDSEDEDEEVGEPRVTGDFEDDFDAPFNPHLNLKDFDALI 670 680 690 700 710 720 730 pF1KE4 LDLERELSKQINVCL ::::::::::::::: CCDS12 LDLERELSKQINVCL 730 >>CCDS74299.1 SYDE1 gene_id:85360|Hs108|chr19 (668 aa) initn: 4450 init1: 4450 opt: 4451 Z-score: 2081.8 bits: 395.7 E(32554): 1.2e-109 Smith-Waterman score: 4492; 90.9% identity (90.9% similar) in 735 aa overlap (1-735:1-668) 10 20 30 40 50 60 pF1KE4 MAEPLLRKTFSRLRGREKLPRKKSDAKERGHPAQRPEPSPPEPEPQAPEGSQAGAEGPSS :::::::::::::::::::::::::::::: CCDS74 MAEPLLRKTFSRLRGREKLPRKKSDAKERG------------------------------ 10 20 30 70 80 90 100 110 120 pF1KE4 PEASRSPARGAYLQSLEPSSRRWVLGGAKPAEDTSLGPGVPGTGEPAGEIWYNPIPEEDP ::::::::::::::::::::::: CCDS74 -------------------------------------PGVPGTGEPAGEIWYNPIPEEDP 40 50 130 140 150 160 170 180 pF1KE4 RPPAPEPPGPQPGSAESEGLAPQGAAPASPPTKASRTKSPGPARRLSIKMKKLPELRRRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 RPPAPEPPGPQPGSAESEGLAPQGAAPASPPTKASRTKSPGPARRLSIKMKKLPELRRRL 60 70 80 90 100 110 190 200 210 220 230 240 pF1KE4 SLRGPRAGRERERAAPAGSVISRYHLDSSVGGPGPAAGPGGTRSPRAGYLSDGDSPERPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 SLRGPRAGRERERAAPAGSVISRYHLDSSVGGPGPAAGPGGTRSPRAGYLSDGDSPERPA 120 130 140 150 160 170 250 260 270 280 290 300 pF1KE4 GPPSPTSFRPYEVGPAARAPPAALWGRLSLHLYGLGGLRPAPGATPRDLCCLLQVDGEAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 GPPSPTSFRPYEVGPAARAPPAALWGRLSLHLYGLGGLRPAPGATPRDLCCLLQVDGEAR 180 190 200 210 220 230 310 320 330 340 350 360 pF1KE4 ARTGPLRGGPDFLRLDHTFHLELEAARLLRALVLAWDPGVRRHRPCAQGTVLLPTVFRGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 ARTGPLRGGPDFLRLDHTFHLELEAARLLRALVLAWDPGVRRHRPCAQGTVLLPTVFRGC 240 250 260 270 280 290 370 380 390 400 410 420 pF1KE4 QAQQLAVRLEPQGLLYAKLTLSEQQEAPATAEPRVFGLPLPLLVERERPPGQVPLIIQKC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 QAQQLAVRLEPQGLLYAKLTLSEQQEAPATAEPRVFGLPLPLLVERERPPGQVPLIIQKC 300 310 320 330 340 350 430 440 450 460 470 480 pF1KE4 VGQIERRGLRVVGLYRLCGSAAVKKELRDAFERDSAAVCLSEDLYPDINVITGILKDYLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 VGQIERRGLRVVGLYRLCGSAAVKKELRDAFERDSAAVCLSEDLYPDINVITGILKDYLR 360 370 380 390 400 410 490 500 510 520 530 540 pF1KE4 ELPTPLITQPLYKVVLEAMARDPPNRVPPTTEGTRGLLSCLPDVERATLTLLLDHLRLVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 ELPTPLITQPLYKVVLEAMARDPPNRVPPTTEGTRGLLSCLPDVERATLTLLLDHLRLVS 420 430 440 450 460 470 550 560 570 580 590 600 pF1KE4 SFHAYNRMTPQNLAVCFGPVLLPARQAPTRPRARSSGPGLASAVDFKHHIEVLHYLLQSW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 SFHAYNRMTPQNLAVCFGPVLLPARQAPTRPRARSSGPGLASAVDFKHHIEVLHYLLQSW 480 490 500 510 520 530 610 620 630 640 650 660 pF1KE4 PDPRLPRQSPDVAPYLRPKRQPPLHLPLADPEVVTRPRGRGGPESPPSNRYAGDWSVCGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 PDPRLPRQSPDVAPYLRPKRQPPLHLPLADPEVVTRPRGRGGPESPPSNRYAGDWSVCGR 540 550 560 570 580 590 670 680 690 700 710 720 pF1KE4 DFLPCGRDFLSGPDYDHVTGSDSEDEDEEVGEPRVTGDFEDDFDAPFNPHLNLKDFDALI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 DFLPCGRDFLSGPDYDHVTGSDSEDEDEEVGEPRVTGDFEDDFDAPFNPHLNLKDFDALI 600 610 620 630 640 650 730 pF1KE4 LDLERELSKQINVCL ::::::::::::::: CCDS74 LDLERELSKQINVCL 660 >>CCDS44169.1 SYDE2 gene_id:84144|Hs108|chr1 (1194 aa) initn: 1606 init1: 505 opt: 1098 Z-score: 526.8 bits: 108.8 E(32554): 5.1e-23 Smith-Waterman score: 1509; 43.9% identity (63.7% similar) in 644 aa overlap (126-692:497-1124) 100 110 120 130 140 150 pF1KE4 LGPGVPGTGEPAGEIWYNPIPEEDPRPPAPEPPGPQPGSAESEGLAPQGAAPASPPTKAS :: .:.: : ..: . . . : . CCDS44 IMVEDSPMLKSPFAGSGILAATNSTELGIMEPSSPNP-SPVKKGSSINWSLP-------D 470 480 490 500 510 160 170 180 190 pF1KE4 RTKSPGPARRLSIKMKKLPELRRRLSLRG-----------PRAGRERERAA------PAG . ::: .:.::.:::::::. :.::..: : .. : . :.: CCDS44 KIKSPRTVRKLSMKMKKLPEFSRKLSVKGTLNYINSPDNTPSLSKYNCREVHHTDILPSG 520 530 540 550 560 570 200 210 220 230 240 pF1KE4 S--------VISRYHLDSSVGGPGPAAGPGGTRSP---RAGYLSDGDSPERPAGPPSPTS . ::::::::.::.. .. : ..:::::::::: . . : CCDS44 NTTTAAKRNVISRYHLDTSVSSQQSYQKKNSMSSKYSCKGGYLSDGDSPELTTKASKHGS 580 590 600 610 620 630 250 260 270 280 pF1KE4 ------------------------FRPYEVGPAARAPPAALWGRLSLHLYGLGGLRPAPG :: : . . . : .:.:.:: :.: : CCDS44 ENKFGKGKEIISNSCSKNEIDIDAFRHYSFSDQPKCSQY-ISGLMSVHFYGAEDLKP-PR 640 650 660 670 680 690 290 300 310 320 330 340 pF1KE4 ATPRDLCCLLQVDGEARARTGPLRGGPDFLRLDHTFHLELEAARLLRALVLAWDPGVRRH .:. : .:::. .:::. : :: .::::..:.: :. :. .:..:.: :.. CCDS44 IDSKDVFCAIQVDSVNKARTALLTCRTTFLDMDHTFNIEIENAQHLKLVVFSWEPTPRKN 700 710 720 730 740 750 350 360 370 380 390 pF1KE4 RPCAQGTVLLPTVFRGCQAQQLAVRLEPQGLLYAKLTLSEQQEAP-----ATAEPRVFGL : : .:::.:::.:: ...::::.:::.::.:.:.:: :: : . :: .::. CCDS44 RVCCHGTVVLPTLFRVTKTHQLAVKLEPRGLIYVKVTLMEQWENSLHGLDINQEPIIFGV 760 770 780 790 800 810 400 410 420 430 440 450 pF1KE4 PLPLLVERERPPGQVPLIIQKCVGQIERRGLRVVGLYRLCGSAAVKKELRDAFERDSAAV . .::.: .:::.::::. .::.:: .::::::::::::::::::.:::::: :: CCDS44 DIQKVVEKENIGLMVPLLIQKCIMEIEKRGCQVVGLYRLCGSAAVKKELREAFERDSKAV 820 830 840 850 860 870 460 470 480 490 500 510 pF1KE4 CLSEDLYPDINVITGILKDYLRELPTPLITQPLYKVVLEAMARDPPNRV-------PPTT : :. :::::::::.:::::::::.::::. ::..::.:::..: . : . CCDS44 GLCENQYPDINVITGVLKDYLRELPSPLITKQLYEAVLDAMAKSPLKMSSNGCENDPGDS 880 890 900 910 920 930 520 530 540 550 560 570 pF1KE4 EGTRGLLSCLPDVERATLTLLLDHLRLVSSFHAYNRMTPQNLAVCFGPVLLPARQAPTRP . : ::.:::..:.::: .:::::.::.:.: :.:: :::::::::::: :: :. CCDS44 KYTVDLLDCLPEIEKATLKMLLDHLKLVASYHEVNKMTCQNLAVCFGPVLLSQRQEPSTH 940 950 960 970 980 990 580 590 600 610 620 pF1KE4 RAR--SSGPGLASAVDFKHHIEVLHYLLQSWPDPRLP-RQSPD-VAP-------YLRPKR : ... ::::.:::.:::::::::: :: :: ..: : . : ::: :. CCDS44 NNRVFTDSEELASALDFKKHIEVLHYLLQLWPVQRLTVKKSTDNLFPEQKSSLNYLRQKK 1000 1010 1020 1030 1040 1050 630 640 650 660 670 pF1KE4 QPP--LHLPLADPEVVTRPRGRGGPESPPSNRYAGDWSVCGRDFLPCGRDFLSGPDYDHV . : :.: .: : ::: .. .:: ::::::::: ::.... .. :. ::: CCDS44 ERPHMLNLSGTDSSGVLRPR-QNRLDSPLSNRYAGDWSSCGENYFLNTKENLNDVDYD-- 1060 1070 1080 1090 1100 1110 680 690 700 710 720 730 pF1KE4 TGSDSEDEDEEVGEPRVTGDFEDDFDAPFNPHLNLKDFDALILDLERELSKQINVCL : .::...:: CCDS44 ---DVPSEDRKIGENYSKMDGPEVMIEQPIPMSKECTFQTYLTMQTVESTVDRKNNLKDL 1120 1130 1140 1150 1160 1170 735 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 01:29:40 2016 done: Sun Nov 6 01:29:41 2016 Total Scan time: 4.380 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]