KCNA6 ORF clone pFN21AE3980

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KOP HaloTag ORF List Flexi search

Halotag ORF Clone pFN21AE3980

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Clone info.

Species

human

Clone Name

pFN21AE3980 Sequence (with vector) Restriction Map

Product ID

FHC24568

ORF Sequence

DNA sequence (1587 bp)
Protein sequence (529 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

Gene

KIEE3980

Symbol

KCNA6

Alias : HBK2, KV1.6, PPP1R96

Description

potassium channel, voltage gated shaker related subfamily A, member 6

Original Clone ID

cp93980

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 1587 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 529 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS8534.1 6.4e-211 100.0 KCNA6 CCDS8536.1 1.5e-69 70.3 KCNA5 CCDS827.1 6.1e-69 69.5 KCNA2 CCDS8535.1 9.4e-67 66.3 KCNA1 CCDS41629.1 1.3e-66 65.9 KCNA4 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition FPrintScan IPR004053 1 14 PR01513 Potassium channel IPR004053 16 29 PR01513 Potassium channel IPR004053 32 44 PR01513 Potassium channel IPR004053 55 66 PR01513 Potassium channel IPR003972 70 81 PR01496 Potassium channel IPR003091 83 102 PR00169 Voltage-dependent potassium channel IPR003968 83 93 PR01491 Potassium channel IPR003972 84 94 PR01496 Potassium channel IPR003972 127 138 PR01496 Potassium channel IPR004053 136 148 PR01513 Potassium channel IPR003972 164 180 PR01496 Potassium channel IPR003091 167 195 PR00169 Voltage-dependent potassium channel IPR003972 187 198 PR01496 Potassium channel IPR004053 221 234 PR01513 Potassium channel IPR004053 236 247 PR01513 Potassium channel IPR004053 249 260 PR01513 Potassium channel IPR003091 265 288 PR00169 Voltage-dependent potassium channel IPR003091 291 311 PR00169 Voltage-dependent potassium channel IPR003091 346 372 PR00169 Voltage-dependent potassium channel IPR003968 351 359 PR01491 Potassium channel IPR003091 375 398 PR00169 Voltage-dependent potassium channel IPR003968 375 389 PR01491 Potassium channel IPR003091 406 428 PR00169 Voltage-dependent potassium channel IPR003091 435 461 PR00169 Voltage-dependent potassium channel IPR003968 446 457 PR01491 Potassium channel IPR004053 474 488 PR01513 Potassium channel IPR004053 501 516 PR01513 Potassium channel HMMPfam IPR003131 44 132 PF02214 Potassium channel IPR005821 266 457 PF00520 Ion transport HMMSmart IPR000210 41 141 SM00225 BTB/POZ-like
Prediction of transmembrane (TM) segments Method No. N terminal transmembrane region C terminal type length SOSUI2 1 175 GIAIVSVLVILISIVIFCLETLP 197 PRIMARY 23 2 260 TDPFFLVETLCIVWFTFELLVRF 282 SECONDARY 23 3 294 NIMNIIDLVAIFPYFITLGTELV 316 PRIMARY 23 4 373 MRELGLLIFFLFIGVILFSSAVY 395 PRIMARY 23 5 413 FWWAVVTMTTVGYGDMYPMTVGG 435 SECONDARY 23 6 438 VGSLCAIAGVLTIALPVPVIVSN 460 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) XP_016874759 529 176257 100.0 100.0 XP_016874761 529 176257 100.0 100.0 XP_016874760 529 176257 100.0 100.0 NP_002226 529 176257 100.0 100.0 XP_005253743 529 176257 100.0 100.0 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AE3980 Download

>KIEE3980  1587 bp
ATGAGATCGGAGAAATCCCTTACGCTGGCGGCGCCGGGGGAGGTCCGTGGGCCGGAGGGA
GAGCAACAGGATGCGGGAGACTTCCCGGAGGCCGGCGGGGGCGGGGGCTGCTGTAGTAGC
GAGCGGCTGGTGATCAATATCTCCGGGCTGCGCTTTGAGACACAATTGCGCACCCTGTCG
CTGTTTCCGGACACGCTGCTCGGAGACCCTGGCCGGCGAGTCCGCTTCTTCGACCCCCTG
AGGAACGAGTACTTCTTCGACCGCAACCGGCCCAGCTTCGACGCCATCCTCTACTACTAC
CAGTCTGGGGGCCGCCTGCGGAGGCCGGTCAACGTGCCCCTGGACATTTTCCTGGAGGAG
ATCCGCTTCTACCAGCTGGGGGACGAGGCCCTGGCGGCCTTCCGGGAGGACGAGGGCTGC
CTGCCCGAAGGTGGCGAGGACGAGAAGCCGCTGCCCTCCCAGCCCTTCCAGCGCCAGGTG
TGGCTGCTCTTTGAGTACCCAGAGAGCTCTGGGCCGGCCAGGGGCATCGCCATCGTCTCC
GTGTTGGTCATTCTCATCTCCATAGTCATCTTTTGCCTGGAGACCTTACCCCAGTTCCGT
GTAGATGGTCGAGGTGGAAACAATGGTGGTGTGAGTCGAGTCTCCCCAGTTTCCAGGGGG
AGTCAGGAGGAAGAGGAGGATGAAGACGATTCCTACACATTTCATCATGGCATCACCCCT
GGGGAAATGGGGACCGGGGGCTCCTCCTCACTCAGTACTCTTGGGGGCTCCTTCTTTACA
GACCCCTTCTTTCTGGTGGAGACGCTGTGCATTGTCTGGTTCACTTTTGAGCTCCTGGTG
CGCTTCTCCGCCTGCCCTAGCAAGCCGGCCTTCTTCCGGAACATCATGAACATCATTGAC
TTGGTGGCTATCTTCCCCTACTTCATCACCCTGGGCACTGAGCTGGTGCAGCAGCAGGAG
CAGCAACCAGCCAGTGGAGGAGGCGGCCAGAATGGGCAGCAGGCCATGTCCCTGGCCATC
CTCCGAGTCATCCGCCTGGTCCGGGTGTTCCGCATCTTCAAGCTCTCCCGCCACTCCAAG
GGGCTGCAGATCCTGGGCAAGACCTTGCAGGCCTCCATGAGGGAGCTGGGGCTGCTCATC
TTCTTCCTCTTCATCGGGGTCATCCTCTTCTCCAGTGCCGTCTACTTCGCAGAGGCTGAC
GATGACGATTCGCTTTTTCCCAGCATCCCGGATGCCTTCTGGTGGGCAGTGGTTACAATG
ACCACGGTAGGTTACGGGGACATGTACCCCATGACTGTGGGGGGAAAGATCGTGGGCTCG
CTGTGTGCCATCGCTGGGGTCCTCACCATTGCCCTGCCTGTGCCCGTCATCGTCTCCAAC
TTCAACTACTTCTACCACCGGGAGACGGAGCAGGAGGAGCAAGGCCAGTATACCCACGTC
ACTTGTGGGCAGCCTGCGCCGGACCTGAGGGCAACTGACAACGGACTTGGCAAGCCTGAC
TTCCCCGAGGCTAACCGGGAACGGAGACCCAGCTACCTTCCTACACCACATCGGGCCTAT
GCAGAGAAAAGAATGCTCACGGAGGTC

ORF Protein

Cloned ORF protein sequence for pFN21AE3980 Download

>KIEE3980  529 aa
MRSEKSLTLAAPGEVRGPEGEQQDAGDFPEAGGGGGCCSSERLVINISGLRFETQLRTLS
LFPDTLLGDPGRRVRFFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFLEE
IRFYQLGDEALAAFREDEGCLPEGGEDEKPLPSQPFQRQVWLLFEYPESSGPARGIAIVS
VLVILISIVIFCLETLPQFRVDGRGGNNGGVSRVSPVSRGSQEEEEDEDDSYTFHHGITP
GEMGTGGSSSLSTLGGSFFTDPFFLVETLCIVWFTFELLVRFSACPSKPAFFRNIMNIID
LVAIFPYFITLGTELVQQQEQQPASGGGGQNGQQAMSLAILRVIRLVRVFRIFKLSRHSK
GLQILGKTLQASMRELGLLIFFLFIGVILFSSAVYFAEADDDDSLFPSIPDAFWWAVVTM
TTVGYGDMYPMTVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEQEEQGQYTHV
TCGQPAPDLRATDNGLGKPDFPEANRERRPSYLPTPHRAYAEKRMLTEV

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AE3980 Download

>pFN21AE3980  6292 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGAGATCGGAGAAATCCCTTACGCTGGCGGCGCC
GGGGGAGGTCCGTGGGCCGGAGGGAGAGCAACAGGATGCGGGAGACTTCCCGGAGGCCGG
CGGGGGCGGGGGCTGCTGTAGTAGCGAGCGGCTGGTGATCAATATCTCCGGGCTGCGCTT
TGAGACACAATTGCGCACCCTGTCGCTGTTTCCGGACACGCTGCTCGGAGACCCTGGCCG
GCGAGTCCGCTTCTTCGACCCCCTGAGGAACGAGTACTTCTTCGACCGCAACCGGCCCAG
CTTCGACGCCATCCTCTACTACTACCAGTCTGGGGGCCGCCTGCGGAGGCCGGTCAACGT
GCCCCTGGACATTTTCCTGGAGGAGATCCGCTTCTACCAGCTGGGGGACGAGGCCCTGGC
GGCCTTCCGGGAGGACGAGGGCTGCCTGCCCGAAGGTGGCGAGGACGAGAAGCCGCTGCC
CTCCCAGCCCTTCCAGCGCCAGGTGTGGCTGCTCTTTGAGTACCCAGAGAGCTCTGGGCC
GGCCAGGGGCATCGCCATCGTCTCCGTGTTGGTCATTCTCATCTCCATAGTCATCTTTTG
CCTGGAGACCTTACCCCAGTTCCGTGTAGATGGTCGAGGTGGAAACAATGGTGGTGTGAG
TCGAGTCTCCCCAGTTTCCAGGGGGAGTCAGGAGGAAGAGGAGGATGAAGACGATTCCTA
CACATTTCATCATGGCATCACCCCTGGGGAAATGGGGACCGGGGGCTCCTCCTCACTCAG
TACTCTTGGGGGCTCCTTCTTTACAGACCCCTTCTTTCTGGTGGAGACGCTGTGCATTGT
CTGGTTCACTTTTGAGCTCCTGGTGCGCTTCTCCGCCTGCCCTAGCAAGCCGGCCTTCTT
CCGGAACATCATGAACATCATTGACTTGGTGGCTATCTTCCCCTACTTCATCACCCTGGG
CACTGAGCTGGTGCAGCAGCAGGAGCAGCAACCAGCCAGTGGAGGAGGCGGCCAGAATGG
GCAGCAGGCCATGTCCCTGGCCATCCTCCGAGTCATCCGCCTGGTCCGGGTGTTCCGCAT
CTTCAAGCTCTCCCGCCACTCCAAGGGGCTGCAGATCCTGGGCAAGACCTTGCAGGCCTC
CATGAGGGAGCTGGGGCTGCTCATCTTCTTCCTCTTCATCGGGGTCATCCTCTTCTCCAG
TGCCGTCTACTTCGCAGAGGCTGACGATGACGATTCGCTTTTTCCCAGCATCCCGGATGC
CTTCTGGTGGGCAGTGGTTACAATGACCACGGTAGGTTACGGGGACATGTACCCCATGAC
TGTGGGGGGAAAGATCGTGGGCTCGCTGTGTGCCATCGCTGGGGTCCTCACCATTGCCCT
GCCTGTGCCCGTCATCGTCTCCAACTTCAACTACTTCTACCACCGGGAGACGGAGCAGGA
GGAGCAAGGCCAGTATACCCACGTCACTTGTGGGCAGCCTGCGCCGGACCTGAGGGCAAC
TGACAACGGACTTGGCAAGCCTGACTTCCCCGAGGCTAACCGGGAACGGAGACCCAGCTA
CCTTCCTACACCACATCGGGCCTATGCAGAGAAAAGAATGCTCACGGAGGTCGTTTAAAC
GAATTCGGGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATC
CGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAAC
TAGCATAACCCCTTGGGGCGGCCGCTTCGAGCAGACATGATAAGATACATTGATGAGTTT
GGACAAACCACAACTAGAATGCAGTGAAAAAAATGCTTTATTTGTGAAATTTGTGATGCT
ATTGCTTTATTTGTAACCATTATAAGCTGCAATAAACAAGTTAACAACAACAATTGCATT
CATTTTATGTTTCAGGTTCAGGGGGAGATGTGGGAGGTTTTTTTAAGCAAGTAAAACCTC
TACAAATGTGGTAAAATCGAATTCTAATGGATCCTCTTTGCGCTTGCGTTTTCCCTTGTC
CAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTC
TACGTAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAATGTGCGCGGAACCCCT
ATTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCATGAGACAATAACCCTGA
TAAATGCTTCAATAATATTGAAAAAGGAAGAGTATGAGTATTCAACATTTCCGTGTCGCC
CTTATTCCCTTTTTTGCGGCATTTTGCCTTCCTGTTTTTGCTCACCCAGAAACGCTGGTG
AAAGTAAAAGATGCTGAAGATCAGTTGGGTGCACGAGTGGGTTACATCGAACTGGATCTC
AACAGCGGTAAGATCCTTGAGAGTTTTCGCCCCGAAGAACGTTTTCCAATGATGAGCACT
TTCAAAGTTCTGCTATGTGGCGCGGTATTATCCCGTATTGACGCCGGGCAAGAGCAACTC
GGTCGCCGCATACACTATTCTCAGAATGACTTGGTTGAGTACTCACCAGTCACAGAAAAG
CATCTTACGGATGGCATGACAGTAAGAGAATTATGCAGTGCTGCCATAACCATGAGTGAT
AACACTGCGGCCAACTTACTTCTGACAACTATCGGAGGACCGAAGGAGCTAACCGCTTTT
TTGCACAACATGGGGGATCATGTAACTCGCCTTGATCGTTGGGAACCGGAGCTGAATGAA
GCCATACCAAACGACGAGCGTGACACCACGATGCCTGTAGCAATGGCAACAACGTTGCGC
AAACTATTAACTGGCGAACTACTTACTCTAGCTTCCCGGCAACAATTAATAGACTGGATG
GAGGCGGATAAAGTTGCAGGACCACTTCTGCGCTCGGCCCTTCCGGCTGGCTGGTTTATT
GCTGATAAATCTGGAGCCGGTGAGCGTGGGTCTCGCGGTATCATTGCAGCACTGGGGCCA
GATGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGAT
GAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAATTCGAA
ATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTAT
CCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCA
GGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGC
ATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACC
AGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCG
GATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTA
GGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCG
TTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGAC
ACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAG
GCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTAT
TTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGAT
CCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGC
GCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGT
GGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCT
AGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGG
TGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCT
CTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCG
GGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCG
GTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAG
ATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCT