TRIM43 ORF clone pFN21AE3958

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KOP HaloTag ORF List Flexi search

Halotag ORF Clone pFN21AE3958

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Clone info.

Species

human

Clone Name

pFN21AE3958 Sequence (with vector) Restriction Map

Product ID

FHC21098

ORF Sequence

DNA sequence (1338 bp)
Protein sequence (446 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

Gene

KIEE3958

Symbol

TRIM43

Alias : TRIM43A

Description

tripartite motif containing 43

Original Clone ID

cp93958

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 1338 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 446 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS2015.1 1.8e-119 100.0 TRIM43 CCDS55762.1 1e-58 52.3 TRIM49B CCDS53694.1 4.9e-58 52.1 TRIM49C CCDS8287.1 8.5e-58 51.9 TRIM49 CCDS60930.1 1.4e-55 51.1 TRIM49D1 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition FPrintScan IPR003879 319 343 PR01407 Butyrophylin-like IPR003879 349 362 PR01407 Butyrophylin-like IPR003879 394 418 PR01407 Butyrophylin-like IPR003879 425 443 PR01407 Butyrophylin-like HMMPfam IPR003877 335 443 PF00622 SPla/RYanodine receptor SPRY HMMSmart IPR001841 15 55 SM00184 Zinc finger IPR000315 88 129 SM00336 Zinc finger IPR018355 334 446 SM00449 SPla/RYanodine receptor subgroup ProfileScan IPR001841 15 56 PS50089 Zinc finger IPR000315 88 129 PS50119 Zinc finger IPR001870 269 446 PS50188 B302/SPRY domain
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_065091 452 606124 51.9 99.8 NP_660215 468 607868 34.3 98.2 XP_016857901 467 607868 34.3 98.2 NP_003132 475 109092 33.6 97.3 XP_016873516 375 606124 43.6 99.8 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AE3958 Download

>KIEE3958  1338 bp
ATGGACTCAGACTTCTCACATGCCTTCCAGAAGGAACTCACCTGCGTCATCTGTTTGAAC
TACCTGGTAGACCCTGTCACCATCTGCTGTGGGCACAGCTTCTGTAGGCCCTGTCTCTGC
CTTTCGTGGGAGGAAGCCCAAAGTCCTGCAAACTGCCCTGCATGCAGGGAACCATCACCG
AAAATGGACTTCAAAACCAATATTCTTCTGAAGAATTTAGTGACCATTGCCAGAAAAGCC
AGTCTCTGGCAATTCCTGAGCTCTGAGAAACAAATATGTGGGACCCATAGGCAAACAAAG
AAGATGTTCTGTGACATGGACAAGAGTCTCCTCTGCTTGCTGTGCTCCAACTCTCAGGAG
CACGGGGCTCACAAACACCATCCCATCGAAGAGGCAGCTGAGGAACACCGGGAGAAACTC
TTAAAGCAAATGAGGATTTTATGGAAAAAGATTCAAGAAAATCAGAGAAATCTATATGAG
GAGGGAAGAACAGCCTTCCTCTGGAGGGGCAATGTGGTTTTACGGGCACAGATGATCAGG
AATGAGTATAGGAAGCTGCATCCGGTTCTCCATAAGGAAGAAAAACAACATTTAGAGAGA
CTGAACAAGGAATACCAAGAGATTTTTCAGCAACTCCAGAGAAGTTGGGTCAAAATGGAT
CAAAAGAGTAAACACTTGAAAGAAATGTATCAGGAACTAATGGAAATGTGTCATAAACCA
GATGTGGAGCTGCTCCAGGATTTGGGAGACATCGTGGCAAGGAGTGAGTCCGTGCTGCTG
CACATGCCCCAGCCTGTGAATCCAGAGCTCACTGCAGGACCCATCACTGGACTGGTGTAC
AGGCTCAACCGCTTCCGAGTGGAAATTTCCTTCCATTTTGAAGTAACCAATCACAATATC
AGGCTCTTTGAGGATGTGAGAAGTTGGATGTTTAGACGTGGACCTTTGAATTCTGACAGA
TCTGACTATTTTGCTGCATGGGGAGCCAGGGTCTTCTCCTTTGGGAAACACTACTGGGAG
CTGGATGTGGACAACTCTTGTGACTGGGCTCTGGGAGTCTGTAACAACTCCTGGATAAGG
AAGAATAGCACAATGGTTAACTCTGAGGACATATTTCTTCTTTTGTGTCTGAAGGTGGAT
AATCATTTCAATCTCTTGACCACCTCCCCAGTGTTTCCTCACTACATAGAGAAACCTCTG
GGCCGGGTTGGTGTGTTTCTTGATTTTGAAAGTGGAAGTGTGAGTTTTTTGAATGTCACC
AAGAGTTCCCTCATATGGAGTTACCCAGCTGGCTCCTTAACTTTTCCTGTCAGGCCTTTC
TTTTACACTGGCCACAGA

ORF Protein

Cloned ORF protein sequence for pFN21AE3958 Download

>KIEE3958  446 aa
MDSDFSHAFQKELTCVICLNYLVDPVTICCGHSFCRPCLCLSWEEAQSPANCPACREPSP
KMDFKTNILLKNLVTIARKASLWQFLSSEKQICGTHRQTKKMFCDMDKSLLCLLCSNSQE
HGAHKHHPIEEAAEEHREKLLKQMRILWKKIQENQRNLYEEGRTAFLWRGNVVLRAQMIR
NEYRKLHPVLHKEEKQHLERLNKEYQEIFQQLQRSWVKMDQKSKHLKEMYQELMEMCHKP
DVELLQDLGDIVARSESVLLHMPQPVNPELTAGPITGLVYRLNRFRVEISFHFEVTNHNI
RLFEDVRSWMFRRGPLNSDRSDYFAAWGARVFSFGKHYWELDVDNSCDWALGVCNNSWIR
KNSTMVNSEDIFLLLCLKVDNHFNLLTTSPVFPHYIEKPLGRVGVFLDFESGSVSFLNVT
KSSLIWSYPAGSLTFPVRPFFYTGHR

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AE3958 Download

>pFN21AE3958  6043 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGGACTCAGACTTCTCACATGCCTTCCAGAAGGA
ACTCACCTGCGTCATCTGTTTGAACTACCTGGTAGACCCTGTCACCATCTGCTGTGGGCA
CAGCTTCTGTAGGCCCTGTCTCTGCCTTTCGTGGGAGGAAGCCCAAAGTCCTGCAAACTG
CCCTGCATGCAGGGAACCATCACCGAAAATGGACTTCAAAACCAATATTCTTCTGAAGAA
TTTAGTGACCATTGCCAGAAAAGCCAGTCTCTGGCAATTCCTGAGCTCTGAGAAACAAAT
ATGTGGGACCCATAGGCAAACAAAGAAGATGTTCTGTGACATGGACAAGAGTCTCCTCTG
CTTGCTGTGCTCCAACTCTCAGGAGCACGGGGCTCACAAACACCATCCCATCGAAGAGGC
AGCTGAGGAACACCGGGAGAAACTCTTAAAGCAAATGAGGATTTTATGGAAAAAGATTCA
AGAAAATCAGAGAAATCTATATGAGGAGGGAAGAACAGCCTTCCTCTGGAGGGGCAATGT
GGTTTTACGGGCACAGATGATCAGGAATGAGTATAGGAAGCTGCATCCGGTTCTCCATAA
GGAAGAAAAACAACATTTAGAGAGACTGAACAAGGAATACCAAGAGATTTTTCAGCAACT
CCAGAGAAGTTGGGTCAAAATGGATCAAAAGAGTAAACACTTGAAAGAAATGTATCAGGA
ACTAATGGAAATGTGTCATAAACCAGATGTGGAGCTGCTCCAGGATTTGGGAGACATCGT
GGCAAGGAGTGAGTCCGTGCTGCTGCACATGCCCCAGCCTGTGAATCCAGAGCTCACTGC
AGGACCCATCACTGGACTGGTGTACAGGCTCAACCGCTTCCGAGTGGAAATTTCCTTCCA
TTTTGAAGTAACCAATCACAATATCAGGCTCTTTGAGGATGTGAGAAGTTGGATGTTTAG
ACGTGGACCTTTGAATTCTGACAGATCTGACTATTTTGCTGCATGGGGAGCCAGGGTCTT
CTCCTTTGGGAAACACTACTGGGAGCTGGATGTGGACAACTCTTGTGACTGGGCTCTGGG
AGTCTGTAACAACTCCTGGATAAGGAAGAATAGCACAATGGTTAACTCTGAGGACATATT
TCTTCTTTTGTGTCTGAAGGTGGATAATCATTTCAATCTCTTGACCACCTCCCCAGTGTT
TCCTCACTACATAGAGAAACCTCTGGGCCGGGTTGGTGTGTTTCTTGATTTTGAAAGTGG
AAGTGTGAGTTTTTTGAATGTCACCAAGAGTTCCCTCATATGGAGTTACCCAGCTGGCTC
CTTAACTTTTCCTGTCAGGCCTTTCTTTTACACTGGCCACAGAGTTTAAACGAATTCGGG
CTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTA
ACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAAC
CCCTTGGGGCGGCCGCTTCGAGCAGACATGATAAGATACATTGATGAGTTTGGACAAACC
ACAACTAGAATGCAGTGAAAAAAATGCTTTATTTGTGAAATTTGTGATGCTATTGCTTTA
TTTGTAACCATTATAAGCTGCAATAAACAAGTTAACAACAACAATTGCATTCATTTTATG
TTTCAGGTTCAGGGGGAGATGTGGGAGGTTTTTTTAAGCAAGTAAAACCTCTACAAATGT
GGTAAAATCGAATTCTAATGGATCCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCC
CAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTAATG
GTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAATGTGCGCGGAACCCCTATTTGTTTA
TTTTTCTAAATACATTCAAATATGTATCCGCTCATGAGACAATAACCCTGATAAATGCTT
CAATAATATTGAAAAAGGAAGAGTATGAGTATTCAACATTTCCGTGTCGCCCTTATTCCC
TTTTTTGCGGCATTTTGCCTTCCTGTTTTTGCTCACCCAGAAACGCTGGTGAAAGTAAAA
GATGCTGAAGATCAGTTGGGTGCACGAGTGGGTTACATCGAACTGGATCTCAACAGCGGT
AAGATCCTTGAGAGTTTTCGCCCCGAAGAACGTTTTCCAATGATGAGCACTTTCAAAGTT
CTGCTATGTGGCGCGGTATTATCCCGTATTGACGCCGGGCAAGAGCAACTCGGTCGCCGC
ATACACTATTCTCAGAATGACTTGGTTGAGTACTCACCAGTCACAGAAAAGCATCTTACG
GATGGCATGACAGTAAGAGAATTATGCAGTGCTGCCATAACCATGAGTGATAACACTGCG
GCCAACTTACTTCTGACAACTATCGGAGGACCGAAGGAGCTAACCGCTTTTTTGCACAAC
ATGGGGGATCATGTAACTCGCCTTGATCGTTGGGAACCGGAGCTGAATGAAGCCATACCA
AACGACGAGCGTGACACCACGATGCCTGTAGCAATGGCAACAACGTTGCGCAAACTATTA
ACTGGCGAACTACTTACTCTAGCTTCCCGGCAACAATTAATAGACTGGATGGAGGCGGAT
AAAGTTGCAGGACCACTTCTGCGCTCGGCCCTTCCGGCTGGCTGGTTTATTGCTGATAAA
TCTGGAGCCGGTGAGCGTGGGTCTCGCGGTATCATTGCAGCACTGGGGCCAGATGGTAAG
CCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAAT
AGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAATTCGAAATGACCGAC
CAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAAT
CAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTA
AAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAA
ATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTC
CCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGT
CCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCA
GTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCG
ACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTAT
CGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTA
CAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCT
GCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAAC
AAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAA
AAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAA
ACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTT
TATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCAT
GAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCA
TAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTG
TTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACA
ATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGC
AGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCT