MATN1 ORF clone pFN21AE1942

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KOP HaloTag ORF List Flexi search

Halotag ORF Clone pFN21AE1942

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Clone info.

Species

human

Clone Name

pFN21AE1942 Sequence (with vector) Restriction Map

Product ID

FHC20178

ORF Sequence

DNA sequence (1488 bp)
Protein sequence (496 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

Gene

KIEE1942

Symbol

MATN1

Alias : CMP, CRTM

Description

matrilin 1, cartilage matrix protein

Original Clone ID

cs02842

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 1488 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 496 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS336.1 1.7e-173 100.0 MATN1 CCDS46226.1 1.6e-46 54.0 MATN3 CCDS13348.1 2.1e-42 45.0 MATN4 CCDS46607.1 2.1e-40 47.5 MATN4 CCDS83309.1 3.2e-39 46.2 MATN2 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition FPrintScan NULL 274 291 PR00453 NULL NULL 313 327 PR00453 NULL NULL 379 387 PR00453 NULL HMMPfam IPR002035 41 211 PF00092 von Willebrand factor IPR013091 227 262 PF07645 EGF calcium-binding IPR002035 275 443 PF00092 von Willebrand factor IPR019466 450 495 PF10393 Matrilin HMMSmart IPR002035 39 218 SM00327 von Willebrand factor IPR006210 226 263 SM00181 Epidermal growth factor-like IPR001881 231 263 SM00179 EGF-like calcium-binding IPR002035 273 452 SM00327 von Willebrand factor ProfileScan IPR002035 41 216 PS50234 von Willebrand factor IPR002035 275 447 PS50234 von Willebrand factor
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_002370 496 115437 100.0 100.0 NP_085095 499 603897 51.2 97.6 XP_016883604 493 603897 51.6 94.6 XP_016883602 575 603897 45.0 88.5 XP_005260654 581 603897 45.0 88.5 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AE1942 Download

>KIEE1942  1488 bp
ATGAGGGTCCTCTCTGGCACTAGCCTCATGCTCTGCAGCCTGCTGCTGCTGCTCCAGGCC
CTGTGCAGCCCTGGCCTCGCCCCCCAGTCCAGAGGCCATCTCTGCCGGACGCGGCCCACA
GACCTGGTGTTTGTTGTCGACAGCTCTCGCAGCGTTCGGCCTGTTGAATTTGAGAAAGTG
AAGGTATTCCTGTCCCAGGTCATCGAGTCGCTGGACGTGGGGCCCAATGCCACCCGGGTG
GGCATGGTCAACTATGCCAGCACCGTGAAGCAGGAGTTCTCGCTGCGGGCTCATGTCTCC
AAGGCCGCACTGCTGCAGGCTGTGCGCCGTATCCAGCCGCTGTCCACAGGCACCATGACC
GGCCTGGCCATCCAGTTCGCTATCACCAAAGCCTTCGGCGATGCAGAGGGTGGTCGTTCC
AGGTCCCCTGACATCAGCAAGGTGGTCATCGTGGTGACAGACGGGAGGCCCCAGGACAGC
GTGCAGGACGTGTCTGCGCGGGCCCGGGCCAGCGGCGTCGAGCTGTTCGCCATCGGAGTG
GGCAGCGTGGACAAGGCCACGCTGCGGCAGATCGCCAGCGAGCCGCAGGACGAACACGTC
GATTACGTGGAGAGCTACAGCGTCATCGAGAAGCTGTCCAGGAAGTTCCAGGAGGCCTTC
TGCGTGGTGTCAGACCTGTGCGCCACAGGGGACCATGACTGTGAGCAGGTGTGCATCAGC
TCCCCCGGTTCCTACACCTGCGCCTGCCACGAGGGCTTCACTCTGAACAGCGACGGCAAG
ACCTGCAATGTCTGCAGTGGTGGTGGTGGCAGCTCGGCCACTGACCTGGTCTTCCTCATT
GACGGATCCAAGAGTGTGAGGCCAGAGAACTTTGAGCTGGTGAAGAAGTTCATCAGTCAG
ATCGTGGATACGCTGGACGTGTCAGACAAGCTGGCCCAGGTGGGGCTGGTGCAGTACTCA
AGCTCTGTGCGCCAGGAGTTCCCCCTGGGTCGCTTCCACACCAAGAAGGACATCAAGGCG
GCTGTGCGGAATATGTCCTACATGGAGAAGGGCACAATGACTGGGGCTGCTCTCAAGTAC
CTCATTGACAATTCCTTCACTGTGTCCAGTGGGGCTAGGCCCGGGGCCCAGAAGGTGGGC
ATTGTCTTCACTGATGGCCGGAGCCAGGACTACATTAATGATGCTGCCAAGAAGGCCAAA
GACCTCGGCTTTAAGATGTTTGCTGTGGGTGTGGGCAATGCCGTGGAGGATGAGCTGAGG
GAAATAGCCTCAGAGCCTGTGGCAGAGCACTACTTCTACACGGCTGACTTCAAGACCATC
AACCAGATAGGCAAGAAGTTGCAGAAGAAGATCTGTGTGGAGGAAGACCCGTGTGCCTGC
GAGTCCCTGGTGAAATTCCAAGCCAAAGTGGAGGGGCTGCTGCAGGCCCTGACCAGGAAA
CTGGAAGCTGTGAGTAAGCGGCTGGCCATCCTGGAGAACACAGTTGTC

ORF Protein

Cloned ORF protein sequence for pFN21AE1942 Download

>KIEE1942  496 aa
MRVLSGTSLMLCSLLLLLQALCSPGLAPQSRGHLCRTRPTDLVFVVDSSRSVRPVEFEKV
KVFLSQVIESLDVGPNATRVGMVNYASTVKQEFSLRAHVSKAALLQAVRRIQPLSTGTMT
GLAIQFAITKAFGDAEGGRSRSPDISKVVIVVTDGRPQDSVQDVSARARASGVELFAIGV
GSVDKATLRQIASEPQDEHVDYVESYSVIEKLSRKFQEAFCVVSDLCATGDHDCEQVCIS
SPGSYTCACHEGFTLNSDGKTCNVCSGGGGSSATDLVFLIDGSKSVRPENFELVKKFISQ
IVDTLDVSDKLAQVGLVQYSSSVRQEFPLGRFHTKKDIKAAVRNMSYMEKGTMTGAALKY
LIDNSFTVSSGARPGAQKVGIVFTDGRSQDYINDAAKKAKDLGFKMFAVGVGNAVEDELR
EIASEPVAEHYFYTADFKTINQIGKKLQKKICVEEDPCACESLVKFQAKVEGLLQALTRK
LEAVSKRLAILENTVV

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AE1942 Download

>pFN21AE1942  6193 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGAGGGTCCTCTCTGGCACTAGCCTCATGCTCTG
CAGCCTGCTGCTGCTGCTCCAGGCCCTGTGCAGCCCTGGCCTCGCCCCCCAGTCCAGAGG
CCATCTCTGCCGGACGCGGCCCACAGACCTGGTGTTTGTTGTCGACAGCTCTCGCAGCGT
TCGGCCTGTTGAATTTGAGAAAGTGAAGGTATTCCTGTCCCAGGTCATCGAGTCGCTGGA
CGTGGGGCCCAATGCCACCCGGGTGGGCATGGTCAACTATGCCAGCACCGTGAAGCAGGA
GTTCTCGCTGCGGGCTCATGTCTCCAAGGCCGCACTGCTGCAGGCTGTGCGCCGTATCCA
GCCGCTGTCCACAGGCACCATGACCGGCCTGGCCATCCAGTTCGCTATCACCAAAGCCTT
CGGCGATGCAGAGGGTGGTCGTTCCAGGTCCCCTGACATCAGCAAGGTGGTCATCGTGGT
GACAGACGGGAGGCCCCAGGACAGCGTGCAGGACGTGTCTGCGCGGGCCCGGGCCAGCGG
CGTCGAGCTGTTCGCCATCGGAGTGGGCAGCGTGGACAAGGCCACGCTGCGGCAGATCGC
CAGCGAGCCGCAGGACGAACACGTCGATTACGTGGAGAGCTACAGCGTCATCGAGAAGCT
GTCCAGGAAGTTCCAGGAGGCCTTCTGCGTGGTGTCAGACCTGTGCGCCACAGGGGACCA
TGACTGTGAGCAGGTGTGCATCAGCTCCCCCGGTTCCTACACCTGCGCCTGCCACGAGGG
CTTCACTCTGAACAGCGACGGCAAGACCTGCAATGTCTGCAGTGGTGGTGGTGGCAGCTC
GGCCACTGACCTGGTCTTCCTCATTGACGGATCCAAGAGTGTGAGGCCAGAGAACTTTGA
GCTGGTGAAGAAGTTCATCAGTCAGATCGTGGATACGCTGGACGTGTCAGACAAGCTGGC
CCAGGTGGGGCTGGTGCAGTACTCAAGCTCTGTGCGCCAGGAGTTCCCCCTGGGTCGCTT
CCACACCAAGAAGGACATCAAGGCGGCTGTGCGGAATATGTCCTACATGGAGAAGGGCAC
AATGACTGGGGCTGCTCTCAAGTACCTCATTGACAATTCCTTCACTGTGTCCAGTGGGGC
TAGGCCCGGGGCCCAGAAGGTGGGCATTGTCTTCACTGATGGCCGGAGCCAGGACTACAT
TAATGATGCTGCCAAGAAGGCCAAAGACCTCGGCTTTAAGATGTTTGCTGTGGGTGTGGG
CAATGCCGTGGAGGATGAGCTGAGGGAAATAGCCTCAGAGCCTGTGGCAGAGCACTACTT
CTACACGGCTGACTTCAAGACCATCAACCAGATAGGCAAGAAGTTGCAGAAGAAGATCTG
TGTGGAGGAAGACCCGTGTGCCTGCGAGTCCCTGGTGAAATTCCAAGCCAAAGTGGAGGG
GCTGCTGCAGGCCCTGACCAGGAAACTGGAAGCTGTGAGTAAGCGGCTGGCCATCCTGGA
GAACACAGTTGTCGTTTAAACGAATTCGGGCTCGGTACCCGGGGATCCTCTAGAGTCGAC
CTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTG
CTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCGGCCGCTTCGAGCAGACATG
ATAAGATACATTGATGAGTTTGGACAAACCACAACTAGAATGCAGTGAAAAAAATGCTTT
ATTTGTGAAATTTGTGATGCTATTGCTTTATTTGTAACCATTATAAGCTGCAATAAACAA
GTTAACAACAACAATTGCATTCATTTTATGTTTCAGGTTCAGGGGGAGATGTGGGAGGTT
TTTTTAAGCAAGTAAAACCTCTACAAATGTGGTAAAATCGAATTCTAATGGATCCTCTTT
GCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCAC
CGTTTCTGCGGACTGGCTTTCTACGTAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGG
GGAAATGTGCGCGGAACCCCTATTTGTTTATTTTTCTAAATACATTCAAATATGTATCCG
CTCATGAGACAATAACCCTGATAAATGCTTCAATAATATTGAAAAAGGAAGAGTATGAGT
ATTCAACATTTCCGTGTCGCCCTTATTCCCTTTTTTGCGGCATTTTGCCTTCCTGTTTTT
GCTCACCCAGAAACGCTGGTGAAAGTAAAAGATGCTGAAGATCAGTTGGGTGCACGAGTG
GGTTACATCGAACTGGATCTCAACAGCGGTAAGATCCTTGAGAGTTTTCGCCCCGAAGAA
CGTTTTCCAATGATGAGCACTTTCAAAGTTCTGCTATGTGGCGCGGTATTATCCCGTATT
GACGCCGGGCAAGAGCAACTCGGTCGCCGCATACACTATTCTCAGAATGACTTGGTTGAG
TACTCACCAGTCACAGAAAAGCATCTTACGGATGGCATGACAGTAAGAGAATTATGCAGT
GCTGCCATAACCATGAGTGATAACACTGCGGCCAACTTACTTCTGACAACTATCGGAGGA
CCGAAGGAGCTAACCGCTTTTTTGCACAACATGGGGGATCATGTAACTCGCCTTGATCGT
TGGGAACCGGAGCTGAATGAAGCCATACCAAACGACGAGCGTGACACCACGATGCCTGTA
GCAATGGCAACAACGTTGCGCAAACTATTAACTGGCGAACTACTTACTCTAGCTTCCCGG
CAACAATTAATAGACTGGATGGAGGCGGATAAAGTTGCAGGACCACTTCTGCGCTCGGCC
CTTCCGGCTGGCTGGTTTATTGCTGATAAATCTGGAGCCGGTGAGCGTGGGTCTCGCGGT
ATCATTGCAGCACTGGGGCCAGATGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACG
GGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTG
ATTAAGCATTGGTAATTCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACT
CAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAG
CAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATA
GGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACC
CGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTG
TTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGC
TTTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGG
GCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTC
TTGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGA
TTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACG
GCTACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAA
AAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTG
TTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTT
CTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGAT
TATCAAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTG
GATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGG
GGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGG
CGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGAT
CGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTG
TCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAG
AGGATCGAGATCT