LHX9 ORF clone pFN21AB7962

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KOP HaloTag ORF List Flexi search

Halotag ORF Clone pFN21AB7962

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Clone info.

Species

human

Clone Name

pFN21AB7962 Sequence (with vector) Restriction Map

Product ID

FHC20752

ORF Sequence

DNA sequence (1191 bp)
Protein sequence (397 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

Gene

KIBB7962

Symbol

LHX9

Description

LIM homeobox 9, transcript variant 1

Original Clone ID

cs00462

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

Cell image

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 1191 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 397 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS1393.1 1.5e-95 100.0 LHX9 CCDS30962.1 2.1e-90 100.0 LHX9 CCDS6853.1 8.2e-33 70.3 LHX2 CCDS10290.1 7.5e-14 37.3 ISL2 CCDS43314.1 2e-12 34.5 ISL1 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR001781 71 128 PF00412 Zinc finger IPR001781 133 188 PF00412 Zinc finger IPR001356 268 324 PF00046 Homeobox HMMSmart IPR001781 70 123 SM00132 Zinc finger IPR001781 132 186 SM00132 Zinc finger IPR001356 267 329 SM00389 Homeobox ProfileScan IPR001781 69 130 PS50023 Zinc finger IPR001781 131 193 PS50023 Zinc finger IPR001356 265 325 PS50071 Homeobox
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_064589 397 606066 100.0 100.0 NP_001014434 388 606066 100.0 95.5 XP_011508083 403 606066 100.0 95.5 XP_016857338 378 606066 100.0 95.2 NP_004780 406 603759 70.3 95.2 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AB7962 Download

>KIBB7962  1191 bp
ATGGAAATAGTGGGGTGCCGAGCAGAAGACAACTCGTGTCCTTTCCGCCCCCCAGCCATG
CTCTTTCACGGGATCTCCGGAGGCCACATCCAAGGCATCATGGAGGAGATGGAGCGCAGA
TCCAAGACTGAGGCCCGTCTGGCCAAAGGCGCCCAGCTCAACGGCCGCGACGCGGGCATG
CCCCCGCTCAGCCCGGAGAAGCCCGCCCTGTGCGCCGGCTGCGGGGGCAAGATCTCGGAC
AGGTACTATCTGCTGGCTGTGGACAAACAGTGGCATCTGAGATGCCTGAAGTGCTGTGAA
TGTAAGCTGGCCCTCGAGTCCGAGCTCACCTGCTTTGCCAAGGACGGTAGCATTTACTGC
AAGGAGGATTACTACAGAAGGTTCTCTGTGCAGAGATGTGCCCGCTGCCACCTTGGCATT
TCCGCCTCGGAGATGGTCATGCGCGCCCGAGACTCTGTCTACCACCTGAGCTGCTTCACC
TGCTCCACTTGCAACAAGACTCTGACCACGGGCGACCATTTCGGCATGAAGGACAGCCTG
GTGTACTGCCGCGCCCACTTCGAGACCCTCTTGCAAGGAGAGTATCCACCGCAGCTGAGC
TACACGGAGCTGGCGGCCAAGAGCGGCGGCCTGGCCCTGCCTTACTTCAACGGTACGGGC
ACCGTGCAGAAAGGGCGGCCCCGGAAGCGGAAGAGCCCAGCGCTGGGAGTGGACATCGTC
AATTACAACTCAGGTTGTAATGAGAATGAGGCAGACCACTTGGACCGGGACCAGCAGCCT
TATCCACCCTCGCAGAAGACCAAGCGCATGCGAACCTCTTTCAAGCATCACCAGCTCCGG
ACCATGAAATCCTACTTTGCCATCAACCACAACCCGGATGCCAAGGACCTCAAGCAGCTT
GCCCAGAAAACAGGTCTGACCAAAAGAGTTTTGCAGGTTTGGTTCCAAAACGCACGAGCC
AAATTCAGAAGGAACCTTTTGCGGCAGGAGAATGGGGGTGTTGATAAAGCTGACGGCACG
TCGCTTCCGGCCCCGCCCTCAGCAGACAGCGGAGCTCTCACTCCACCCGGCACTGCGACC
ACTTTAACAGACCTGACCAATCCCACTATCACTGTAGTGACATCCGTGACCTCTAACATG
GACAGCCACGAATCCGGAAGCCCCTCACAAACTACCTTAACAAACCTTTTC

ORF Protein

Cloned ORF protein sequence for pFN21AB7962 Download

>KIBB7962  397 aa
MEIVGCRAEDNSCPFRPPAMLFHGISGGHIQGIMEEMERRSKTEARLAKGAQLNGRDAGM
PPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYC
KEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSL
VYCRAHFETLLQGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIV
NYNSGCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL
AQKTGLTKRVLQVWFQNARAKFRRNLLRQENGGVDKADGTSLPAPPSADSGALTPPGTAT
TLTDLTNPTITVVTSVTSNMDSHESGSPSQTTLTNLF

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AB7962 Download

>pFN21AB7962  5896 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGGAAATAGTGGGGTGCCGAGCAGAAGACAACTC
GTGTCCTTTCCGCCCCCCAGCCATGCTCTTTCACGGGATCTCCGGAGGCCACATCCAAGG
CATCATGGAGGAGATGGAGCGCAGATCCAAGACTGAGGCCCGTCTGGCCAAAGGCGCCCA
GCTCAACGGCCGCGACGCGGGCATGCCCCCGCTCAGCCCGGAGAAGCCCGCCCTGTGCGC
CGGCTGCGGGGGCAAGATCTCGGACAGGTACTATCTGCTGGCTGTGGACAAACAGTGGCA
TCTGAGATGCCTGAAGTGCTGTGAATGTAAGCTGGCCCTCGAGTCCGAGCTCACCTGCTT
TGCCAAGGACGGTAGCATTTACTGCAAGGAGGATTACTACAGAAGGTTCTCTGTGCAGAG
ATGTGCCCGCTGCCACCTTGGCATTTCCGCCTCGGAGATGGTCATGCGCGCCCGAGACTC
TGTCTACCACCTGAGCTGCTTCACCTGCTCCACTTGCAACAAGACTCTGACCACGGGCGA
CCATTTCGGCATGAAGGACAGCCTGGTGTACTGCCGCGCCCACTTCGAGACCCTCTTGCA
AGGAGAGTATCCACCGCAGCTGAGCTACACGGAGCTGGCGGCCAAGAGCGGCGGCCTGGC
CCTGCCTTACTTCAACGGTACGGGCACCGTGCAGAAAGGGCGGCCCCGGAAGCGGAAGAG
CCCAGCGCTGGGAGTGGACATCGTCAATTACAACTCAGGTTGTAATGAGAATGAGGCAGA
CCACTTGGACCGGGACCAGCAGCCTTATCCACCCTCGCAGAAGACCAAGCGCATGCGAAC
CTCTTTCAAGCATCACCAGCTCCGGACCATGAAATCCTACTTTGCCATCAACCACAACCC
GGATGCCAAGGACCTCAAGCAGCTTGCCCAGAAAACAGGTCTGACCAAAAGAGTTTTGCA
GGTTTGGTTCCAAAACGCACGAGCCAAATTCAGAAGGAACCTTTTGCGGCAGGAGAATGG
GGGTGTTGATAAAGCTGACGGCACGTCGCTTCCGGCCCCGCCCTCAGCAGACAGCGGAGC
TCTCACTCCACCCGGCACTGCGACCACTTTAACAGACCTGACCAATCCCACTATCACTGT
AGTGACATCCGTGACCTCTAACATGGACAGCCACGAATCCGGAAGCCCCTCACAAACTAC
CTTAACAAACCTTTTCGTTTAAACGAATTCGGGCTCGGTACCCGGGGATCCTCTAGAGTC
GACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGG
CTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCGGCCGCTTCGAGCAGAC
ATGATAAGATACATTGATGAGTTTGGACAAACCACAACTAGAATGCAGTGAAAAAAATGC
TTTATTTGTGAAATTTGTGATGCTATTGCTTTATTTGTAACCATTATAAGCTGCAATAAA
CAAGTTAACAACAACAATTGCATTCATTTTATGTTTCAGGTTCAGGGGGAGATGTGGGAG
GTTTTTTTAAGCAAGTAAAACCTCTACAAATGTGGTAAAATCGAATTCTAATGGATCCTC
TTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAG
CACCGTTTCTGCGGACTGGCTTTCTACGTAATGGTTTCTTAGACGTCAGGTGGCACTTTT
CGGGGAAATGTGCGCGGAACCCCTATTTGTTTATTTTTCTAAATACATTCAAATATGTAT
CCGCTCATGAGACAATAACCCTGATAAATGCTTCAATAATATTGAAAAAGGAAGAGTATG
AGTATTCAACATTTCCGTGTCGCCCTTATTCCCTTTTTTGCGGCATTTTGCCTTCCTGTT
TTTGCTCACCCAGAAACGCTGGTGAAAGTAAAAGATGCTGAAGATCAGTTGGGTGCACGA
GTGGGTTACATCGAACTGGATCTCAACAGCGGTAAGATCCTTGAGAGTTTTCGCCCCGAA
GAACGTTTTCCAATGATGAGCACTTTCAAAGTTCTGCTATGTGGCGCGGTATTATCCCGT
ATTGACGCCGGGCAAGAGCAACTCGGTCGCCGCATACACTATTCTCAGAATGACTTGGTT
GAGTACTCACCAGTCACAGAAAAGCATCTTACGGATGGCATGACAGTAAGAGAATTATGC
AGTGCTGCCATAACCATGAGTGATAACACTGCGGCCAACTTACTTCTGACAACTATCGGA
GGACCGAAGGAGCTAACCGCTTTTTTGCACAACATGGGGGATCATGTAACTCGCCTTGAT
CGTTGGGAACCGGAGCTGAATGAAGCCATACCAAACGACGAGCGTGACACCACGATGCCT
GTAGCAATGGCAACAACGTTGCGCAAACTATTAACTGGCGAACTACTTACTCTAGCTTCC
CGGCAACAATTAATAGACTGGATGGAGGCGGATAAAGTTGCAGGACCACTTCTGCGCTCG
GCCCTTCCGGCTGGCTGGTTTATTGCTGATAAATCTGGAGCCGGTGAGCGTGGGTCTCGC
GGTATCATTGCAGCACTGGGGCCAGATGGTAAGCCCTCCCGTATCGTAGTTATCTACACG
ACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCA
CTGATTAAGCATTGGTAATTCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTC
ACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGT
GAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCC
ATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAA
ACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTC
CTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGG
CGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGC
TGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATC
GTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACA
GGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACT
ACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCG
GAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTT
TTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCT
TTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGA
GATTATCAAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACG
CTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAG
TGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATC
AGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGT
GATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTA
CTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCG
TAGAGGATCGAGATCT