FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB7962, 397 aa 1>>>pF1KB7962 397 - 397 aa - 397 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.1897+/-0.000879; mu= 10.4861+/- 0.054 mean_var=228.0644+/-52.720, 0's: 0 Z-trim(113.1): 157 B-trim: 507 in 1/49 Lambda= 0.084927 statistics sampled from 13571 (13754) to 13571 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.422), width: 16 Scan time: 3.160 The best scores are: opt bits E(32554) CCDS1393.1 LHX9 gene_id:56956|Hs108|chr1 ( 397) 2730 347.3 1.5e-95 CCDS30962.1 LHX9 gene_id:56956|Hs108|chr1 ( 388) 2590 330.1 2.1e-90 CCDS6853.1 LHX2 gene_id:9355|Hs108|chr9 ( 406) 1029 138.9 8.2e-33 CCDS10290.1 ISL2 gene_id:64843|Hs108|chr15 ( 359) 514 75.7 7.5e-14 CCDS43314.1 ISL1 gene_id:3670|Hs108|chr5 ( 349) 475 70.9 2e-12 CCDS8678.1 LMO3 gene_id:55885|Hs108|chr12 ( 145) 451 67.5 9.1e-12 CCDS58211.1 LMO3 gene_id:55885|Hs108|chr12 ( 156) 451 67.5 9.5e-12 CCDS58212.1 LMO3 gene_id:55885|Hs108|chr12 ( 163) 451 67.5 9.8e-12 CCDS6995.1 LHX3 gene_id:8022|Hs108|chr9 ( 402) 457 68.8 1e-11 CCDS6994.1 LHX3 gene_id:8022|Hs108|chr9 ( 397) 454 68.4 1.3e-11 CCDS1338.1 LHX4 gene_id:89884|Hs108|chr1 ( 390) 451 68.0 1.7e-11 CCDS44534.1 LMO1 gene_id:4004|Hs108|chr11 ( 156) 440 66.2 2.4e-11 CCDS58118.1 LMO1 gene_id:4004|Hs108|chr11 ( 155) 438 65.9 2.9e-11 CCDS56583.1 LHX6 gene_id:26468|Hs108|chr9 ( 363) 436 66.2 5.7e-11 CCDS56584.1 LHX6 gene_id:26468|Hs108|chr9 ( 366) 436 66.2 5.7e-11 CCDS6837.2 LHX6 gene_id:26468|Hs108|chr9 ( 377) 436 66.2 5.8e-11 CCDS6838.2 LHX6 gene_id:26468|Hs108|chr9 ( 392) 436 66.2 6e-11 CCDS713.1 LMO4 gene_id:8543|Hs108|chr1 ( 165) 426 64.5 8.2e-11 >>CCDS1393.1 LHX9 gene_id:56956|Hs108|chr1 (397 aa) initn: 2730 init1: 2730 opt: 2730 Z-score: 1829.0 bits: 347.3 E(32554): 1.5e-95 Smith-Waterman score: 2730; 100.0% identity (100.0% similar) in 397 aa overlap (1-397:1-397) 10 20 30 40 50 60 pF1KB7 MEIVGCRAEDNSCPFRPPAMLFHGISGGHIQGIMEEMERRSKTEARLAKGAQLNGRDAGM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 MEIVGCRAEDNSCPFRPPAMLFHGISGGHIQGIMEEMERRSKTEARLAKGAQLNGRDAGM 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 PPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 PPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 KEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 KEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB7 VYCRAHFETLLQGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 VYCRAHFETLLQGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB7 NYNSGCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 NYNSGCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB7 AQKTGLTKRVLQVWFQNARAKFRRNLLRQENGGVDKADGTSLPAPPSADSGALTPPGTAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 AQKTGLTKRVLQVWFQNARAKFRRNLLRQENGGVDKADGTSLPAPPSADSGALTPPGTAT 310 320 330 340 350 360 370 380 390 pF1KB7 TLTDLTNPTITVVTSVTSNMDSHESGSPSQTTLTNLF ::::::::::::::::::::::::::::::::::::: CCDS13 TLTDLTNPTITVVTSVTSNMDSHESGSPSQTTLTNLF 370 380 390 >>CCDS30962.1 LHX9 gene_id:56956|Hs108|chr1 (388 aa) initn: 2590 init1: 2590 opt: 2590 Z-score: 1736.4 bits: 330.1 E(32554): 2.1e-90 Smith-Waterman score: 2590; 100.0% identity (100.0% similar) in 379 aa overlap (19-397:10-388) 10 20 30 40 50 60 pF1KB7 MEIVGCRAEDNSCPFRPPAMLFHGISGGHIQGIMEEMERRSKTEARLAKGAQLNGRDAGM :::::::::::::::::::::::::::::::::::::::::: CCDS30 MLNGTTLEAAMLFHGISGGHIQGIMEEMERRSKTEARLAKGAQLNGRDAGM 10 20 30 40 50 70 80 90 100 110 120 pF1KB7 PPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 PPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYC 60 70 80 90 100 110 130 140 150 160 170 180 pF1KB7 KEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 KEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSL 120 130 140 150 160 170 190 200 210 220 230 240 pF1KB7 VYCRAHFETLLQGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 VYCRAHFETLLQGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIV 180 190 200 210 220 230 250 260 270 280 290 300 pF1KB7 NYNSGCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 NYNSGCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 240 250 260 270 280 290 310 320 330 340 350 360 pF1KB7 AQKTGLTKRVLQVWFQNARAKFRRNLLRQENGGVDKADGTSLPAPPSADSGALTPPGTAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 AQKTGLTKRVLQVWFQNARAKFRRNLLRQENGGVDKADGTSLPAPPSADSGALTPPGTAT 300 310 320 330 340 350 370 380 390 pF1KB7 TLTDLTNPTITVVTSVTSNMDSHESGSPSQTTLTNLF ::::::::::::::::::::::::::::::::::::: CCDS30 TLTDLTNPTITVVTSVTSNMDSHESGSPSQTTLTNLF 360 370 380 >>CCDS6853.1 LHX2 gene_id:9355|Hs108|chr9 (406 aa) initn: 1824 init1: 930 opt: 1029 Z-score: 702.6 bits: 138.9 E(32554): 8.2e-33 Smith-Waterman score: 1891; 70.3% identity (85.5% similar) in 407 aa overlap (20-397:1-406) 10 20 30 40 50 pF1KB7 MEIVGCRAEDNSCPFRPPAMLFHGISGGHIQGIMEEMERRSKTEARLAKGAQLNG-RDAG ::::..:: ...:...::.::.:.:: ..: : .. CCDS68 MLFHSLSGPEVHGVIDEMDRRAKSEAPAISSAIDRGDTETT 10 20 30 40 60 70 80 90 100 110 pF1KB7 MPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY :: .: .. ::::::::::::::::::::::::.:::::::::: ::::::::.:::::: CCDS68 MPSISSDRAALCAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIY 50 60 70 80 90 100 120 130 140 150 160 170 pF1KB7 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDS :::::::::::::::::::::::::::::::: ::::.::::.:::: :::::::::::: CCDS68 CKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDS 110 120 130 140 150 160 180 190 200 210 220 pF1KB7 LVYCRAHFETLLQGEYPPQLSYTELAA--------KSGGLA--------LPYFNGTGTVQ ::::: :::.::::::: .......:: ::.::. :::.::.:::: CCDS68 LVYCRLHFEALLQGEYPAHFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQ 170 180 190 200 210 220 230 240 250 260 270 280 pF1KB7 KGRPRKRKSPALGVDIVNYNSG--CNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRT ::::::::::. :.:.. ::.. ::::.:.:::::: ::: :::::::::::::::::: CCDS68 KGRPRKRKSPGPGADLAAYNAALSCNENDAEHLDRDQ-PYPSSQKTKRMRTSFKHHQLRT 230 240 250 260 270 280 290 300 310 320 330 340 pF1KB7 MKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENGGVDKADGTS :::::::::::::::::::::::::::::::::::::::::::::::::: ::::. .. CCDS68 MKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENTGVDKSTDAA 290 300 310 320 330 340 350 360 370 380 390 pF1KB7 L----PAPPSAD--SGALTPPGTATTLTDLTNPTI----TVVTSVTSNMDSHESGSPSQT : :. :... ...:.: .: :::::::.::. .:.::: .:...:: ::::: CCDS68 LQTGTPSGPASELSNASLSPSSTPTTLTDLTSPTLPTVTSVLTSVPGNLEGHEPHSPSQT 350 360 370 380 390 400 pF1KB7 TLTNLF :::::: CCDS68 TLTNLF >>CCDS10290.1 ISL2 gene_id:64843|Hs108|chr15 (359 aa) initn: 412 init1: 250 opt: 514 Z-score: 362.1 bits: 75.7 E(32554): 7.5e-14 Smith-Waterman score: 621; 37.3% identity (62.4% similar) in 287 aa overlap (60-342:14-267) 30 40 50 60 70 80 pF1KB7 IQGIMEEMERRSKTEARLAKGAQLNGRDAGMPPLSPEKP--ALCAGCGGKISDRYYL-LA : : .:: :.:.:::..: :.. : .. CCDS10 MVDIIFHYPFLGAMGDHSKKKPGTAMCVGCGSQIHDQFILRVS 10 20 30 40 90 100 110 120 130 140 pF1KB7 VDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMV : .:: :::: ::. :. :::..::. :::.:: : :.. .::.:..:.:.:..: CCDS10 PDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYVRLFGI-KCAKCQVGFSSSDLV 50 60 70 80 90 100 150 160 170 180 190 200 pF1KB7 MRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPPQLSYTELAA :::::::::. :: ::.:.. : ::.:.... . ::: ::. . . CCDS10 MRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADHGLLLE-------RAAAGSP 110 120 130 140 150 210 220 230 240 250 260 pF1KB7 KSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIVNYNSGCNENEADHLDRDQQPYPPSQK .: : :: : . : :. ::: :. .. ..: CCDS10 RSPG-PLPGARGLHLPDAGSGRQ---PAL---------------RPHVHKQ------TEK 160 170 180 190 270 280 290 300 310 320 pF1KB7 TKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAK-FRRN : :.:: ....::.:... .: : ::: .::.. :::. ::..::::: : : ... CCDS10 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKKS 200 210 220 230 240 250 330 340 350 360 370 380 pF1KB7 LLRQENGGVDKADGTSLPAPPSADSGALTPPGTATTLTDLTNPTITVVTSVTSNMDSHES .: .. ...: ::: CCDS10 ILMKQLQQQQHSDKTSLQGLTGTPLVAGSPIRHENAVQGSAVEVQTYQPPWKALSEFALQ 260 270 280 290 300 310 >>CCDS43314.1 ISL1 gene_id:3670|Hs108|chr5 (349 aa) initn: 421 init1: 259 opt: 475 Z-score: 336.4 bits: 70.9 E(32554): 2e-12 Smith-Waterman score: 604; 34.5% identity (61.7% similar) in 313 aa overlap (57-356:3-281) 30 40 50 60 70 80 pF1KB7 GGHIQGIMEEMERRSKTEARLAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYL-L : : :: . . .::.:::..: :.: : . CCDS43 MGDMGDPPKKKRLISLCVGCGNQIHDQYILRV 10 20 30 90 100 110 120 130 140 pF1KB7 AVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEM . : .:: :::: ::. :. :::..::. :::.:: : ... .::.: .:.: ... CCDS43 SPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYIRLYGI-KCAKCSIGFSKNDF 40 50 60 70 80 90 150 160 170 180 190 200 pF1KB7 VMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPPQLSYTELA :::::..:::. :: : .:.. : ::.:..... ..::: ... : : CCDS43 VMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVV------------ERA 100 110 120 130 210 220 230 240 250 260 pF1KB7 AKSGGLALPYFNGTGTVQ-KGRPRKRKSPALGVDIVNYNSGCNENEADHLDRDQQPYPPS . ..: : .. . .: ..: . ..::: :. . :: CCDS43 SLGAGDPLSPLHPARPLQMAAEPISARQPAL---------------RPHVHK--QP---- 140 150 160 170 270 280 290 300 310 320 pF1KB7 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAK-FR .:: :.:: ....::.:... .: : ::: .::.. :::. ::..::::: : : . CCDS43 EKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 180 190 200 210 220 230 330 340 350 360 370 pF1KB7 RNLLR---QENGGVDKAD-----GTSLPA--PPSADSGALTPPGTATTLTDLTNPTITVV :... :.. ::.. :: . : : :.: . : CCDS43 RSIMMKQLQQQQPNDKTNIQGMTGTPMVAASPERHDGGLQANPVEVQSYQPPWKVLSDFA 240 250 260 270 280 290 380 390 pF1KB7 TSVTSNMDSHESGSPSQTTLTNLF CCDS43 LQSDIDQPAFQQLVNFSEGGPGSNSTGSEVASMSSQLPDTPNSMVASPIEA 300 310 320 330 340 >>CCDS8678.1 LMO3 gene_id:55885|Hs108|chr12 (145 aa) initn: 404 init1: 227 opt: 451 Z-score: 324.7 bits: 67.5 E(32554): 9.1e-12 Smith-Waterman score: 451; 46.9% identity (70.3% similar) in 145 aa overlap (60-199:1-144) 30 40 50 60 70 80 pF1KB7 IQGIMEEMERRSKTEARLAKGAQLNGRDAGMPPLSPE-KPALCAGCGGKISDRYYLLAVD : ..:. :: ::::. ::.::: : :.: CCDS86 MLSVQPDTKPKGCAGCNRKIKDRYLLKALD 10 20 30 90 100 110 120 130 140 pF1KB7 KQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRFSVQ-RCARCHLGISASEM : :: :::: :.:.:. : : ..: . : :..:: : :.: :: : : : :: CCDS86 KYWHEDCLKCACCDCRLG-EVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEM 40 50 60 70 80 150 160 170 180 190 200 pF1KB7 VMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGE-YPPQLSYTEL ::::.:.::::.::.:. ::. . .::.: .:.... :.. .: :. : : ::. CCDS86 VMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR 90 100 110 120 130 140 210 220 230 240 250 260 pF1KB7 AAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIVNYNSGCNENEADHLDRDQQPYPPS >>CCDS58211.1 LMO3 gene_id:55885|Hs108|chr12 (156 aa) initn: 404 init1: 227 opt: 451 Z-score: 324.4 bits: 67.5 E(32554): 9.5e-12 Smith-Waterman score: 451; 46.9% identity (70.3% similar) in 145 aa overlap (60-199:12-155) 30 40 50 60 70 80 pF1KB7 IQGIMEEMERRSKTEARLAKGAQLNGRDAGMPPLSPE-KPALCAGCGGKISDRYYLLAVD : ..:. :: ::::. ::.::: : :.: CCDS58 MQKKEKSFGIQMLSVQPDTKPKGCAGCNRKIKDRYLLKALD 10 20 30 40 90 100 110 120 130 140 pF1KB7 KQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRFSVQ-RCARCHLGISASEM : :: :::: :.:.:. : : ..: . : :..:: : :.: :: : : : :: CCDS58 KYWHEDCLKCACCDCRLG-EVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEM 50 60 70 80 90 100 150 160 170 180 190 200 pF1KB7 VMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGE-YPPQLSYTEL ::::.:.::::.::.:. ::. . .::.: .:.... :.. .: :. : : ::. CCDS58 VMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR 110 120 130 140 150 210 220 230 240 250 260 pF1KB7 AAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIVNYNSGCNENEADHLDRDQQPYPPS >>CCDS58212.1 LMO3 gene_id:55885|Hs108|chr12 (163 aa) initn: 380 init1: 227 opt: 451 Z-score: 324.2 bits: 67.5 E(32554): 9.8e-12 Smith-Waterman score: 451; 46.9% identity (70.3% similar) in 145 aa overlap (60-199:19-162) 30 40 50 60 70 80 pF1KB7 IQGIMEEMERRSKTEARLAKGAQLNGRDAGMPPLSPE-KPALCAGCGGKISDRYYLLAVD : ..:. :: ::::. ::.::: : :.: CCDS58 MLMEGGRAAAARNVSSIQMLSVQPDTKPKGCAGCNRKIKDRYLLKALD 10 20 30 40 90 100 110 120 130 140 pF1KB7 KQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRFSVQ-RCARCHLGISASEM : :: :::: :.:.:. : : ..: . : :..:: : :.: :: : : : :: CCDS58 KYWHEDCLKCACCDCRLG-EVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEM 50 60 70 80 90 100 150 160 170 180 190 200 pF1KB7 VMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGE-YPPQLSYTEL ::::.:.::::.::.:. ::. . .::.: .:.... :.. .: :. : : ::. CCDS58 VMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR 110 120 130 140 150 160 210 220 230 240 250 260 pF1KB7 AAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIVNYNSGCNENEADHLDRDQQPYPPS >>CCDS6995.1 LHX3 gene_id:8022|Hs108|chr9 (402 aa) initn: 561 init1: 183 opt: 457 Z-score: 323.8 bits: 68.8 E(32554): 1e-11 Smith-Waterman score: 481; 34.4% identity (54.5% similar) in 299 aa overlap (37-332:1-225) 10 20 30 40 50 60 pF1KB7 RAEDNSCPFRPPAMLFHGISGGHIQGIMEEMERRSKT-EARLAKGAQLN-GRDAGMPPLS :: :.. :: . :..: . : : CCDS69 MEARGELGPARESAGGDLLLALLARRADLR 10 20 30 70 80 90 100 110 120 pF1KB7 PEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDY : : ::::: .: ::. : :.:..:: .:::: .:. : . ::.. :.:::.:. CCDS69 REIP-LCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAER--CFSRGESVYCKDDF 40 50 60 70 80 130 140 150 160 170 180 pF1KB7 YRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKDSLVYC ..::.. .:: :.::: ...: ::.: :::: ::.: .:.. :.:::.: :.:: . : CCDS69 FKRFGT-KCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVC 90 100 110 120 130 140 190 200 210 220 230 240 pF1KB7 RAHFETLLQGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIVNYN .: .:: : : .: .:: ::: CCDS69 KADYETAKQRE-------AEATAK------------------RPR--------------- 150 160 250 260 270 280 290 300 pF1KB7 SGCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQK :.. .::.:.:: . . .: . .::... CCDS69 ----------------------------TTITAKQLETLKSAYNTSPKPARHVREQLSSE 170 180 190 310 320 330 340 350 360 pF1KB7 TGLTKRVLQVWFQNARAKFRRNLLRQENGGVDKADGTSLPAPPSADSGALTPPGTATTLT ::: ::.:::::: ::: .: :... : CCDS69 TGLDMRVVQVWFQNRRAKEKR--LKKDAGRQRWGQYFRNMKRSRGGSKSDKDSVQEGQDS 200 210 220 230 240 250 >>CCDS6994.1 LHX3 gene_id:8022|Hs108|chr9 (397 aa) initn: 561 init1: 183 opt: 454 Z-score: 321.9 bits: 68.4 E(32554): 1.3e-11 Smith-Waterman score: 478; 35.1% identity (55.2% similar) in 268 aa overlap (66-332:27-220) 40 50 60 70 80 90 pF1KB7 EMERRSKTEARLAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRC : : ::::: .: ::. : :.:..:: .: CCDS69 MLLETGLERDRARPGAAAVCTLGGTREIP-LCAGCDQHILDRFILKALDRHWHSKC 10 20 30 40 50 100 110 120 130 140 150 pF1KB7 LKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYH ::: .:. : . ::.. :.:::.:...::.. .:: :.::: ...: ::.: ::: CCDS69 LKCSDCHTPLAER--CFSRGESVYCKDDFFKRFGT-KCAACQLGIPPTQVVRRAQDFVYH 60 70 80 90 100 110 160 170 180 190 200 210 pF1KB7 LSCFTCSTCNKTLTTGDHFG-MKDSLVYCRAHFETLLQGEYPPQLSYTELAAKSGGLALP : ::.: .:.. :.:::.: :.:: . :.: .:: : : .: .:: CCDS69 LHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQRE-------AEATAK------- 120 130 140 150 220 230 240 250 260 270 pF1KB7 YFNGTGTVQKGRPRKRKSPALGVDIVNYNSGCNENEADHLDRDQQPYPPSQKTKRMRTSF ::: :.. CCDS69 -----------RPR-------------------------------------------TTI 160 280 290 300 310 320 330 pF1KB7 KHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENGGV .::.:.:: . . .: . .::...::: ::.:::::: ::: .: :... : CCDS69 TAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKR--LKKDAGRQ 170 180 190 200 210 220 340 350 360 370 380 390 pF1KB7 DKADGTSLPAPPSADSGALTPPGTATTLTDLTNPTITVVTSVTSNMDSHESGSPSQTTLT CCDS69 RWGQYFRNMKRSRGGSKSDKDSVQEGQDSDAEVSFPDEPSLAEMGPANGLYGSLGEPTQA 230 240 250 260 270 280 397 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 05:31:09 2016 done: Sun Nov 6 05:31:09 2016 Total Scan time: 3.160 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]