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SpecieshumanProduct IDFXC01726Cloning SiteSgfI-PmeIGeneKIBB3232SymbolLRRN2
Alias : FIGLER7, GAC1, LRANK1, LRRN5Descriptionleucine rich repeat neuronal 2, transcript variant 1Original Clone IDfk08334
Length: 2139 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 713 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS1448.1 6.8e-193 99.9 LRRN2 CCDS33685.1 1.7e-84 55.7 LRRN1 CCDS5754.1 7.7e-83 52.1 LRRN3 CCDS10446.1 3.3e-13 30.0 IGFALS CCDS53982.1 3.4e-13 30.0 IGFALS
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition HMMPfam IPR001611 94 113 PF00560 Leucine-rich repeat IPR001611 142 164 PF00560 Leucine-rich repeat IPR001611 312 334 PF00560 Leucine-rich repeat IPR013098 430 514 PF07679 Immunoglobulin I-set HMMSmart NULL 92 113 SM00365 NULL IPR003591 92 115 SM00369 Leucine-rich repeat IPR003591 116 139 SM00369 Leucine-rich repeat NULL 140 166 SM00365 NULL IPR003591 140 163 SM00369 Leucine-rich repeat IPR003591 164 187 SM00369 Leucine-rich repeat IPR003591 188 211 SM00369 Leucine-rich repeat IPR003591 212 235 SM00369 Leucine-rich repeat NULL 236 262 SM00365 NULL IPR003591 236 259 SM00369 Leucine-rich repeat IPR003591 260 283 SM00369 Leucine-rich repeat IPR003591 309 333 SM00369 Leucine-rich repeat IPR003591 334 357 SM00369 Leucine-rich repeat IPR000483 369 421 SM00082 Cysteine-rich flanking region IPR003599 430 515 SM00409 Immunoglobulin subtype IPR003598 436 504 SM00408 Immunoglobulin subtype 2 ProfileScan IPR001611 94 115 PS51450 Leucine-rich repeat IPR001611 118 139 PS51450 Leucine-rich repeat IPR001611 142 163 PS51450 Leucine-rich repeat IPR001611 166 187 PS51450 Leucine-rich repeat IPR001611 190 211 PS51450 Leucine-rich repeat IPR001611 214 235 PS51450 Leucine-rich repeat IPR001611 238 259 PS51450 Leucine-rich repeat IPR001611 262 283 PS51450 Leucine-rich repeat IPR001611 311 333 PS51450 Leucine-rich repeat IPR007110 422 511 PS50835 Immunoglobulin-like
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 1 MRLLVAPLLLAWVAGATATVPVV 23 PRIMARY 23 2 59 FLTAVPPALPAGTQTLLLQSNSI 81 SECONDARY 23
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) XP_011507368 713 605492 99.9 100.0 NP_006329 713 605492 99.9 100.0 XP_005244884 713 605492 99.9 100.0 NP_963924 713 605492 99.9 100.0 XP_016855539 713 605492 99.9 100.0 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KB3232 Download>KIBB3232 2139 bp ATGAGGCTTCTCGTGGCCCCACTCTTGCTAGCTTGGGTGGCTGGTGCCACTGCCACTGTG CCCGTGGTACCCTGGCATGTTCCCTGCCCCCCTCAGTGTGCCTGCCAGATCCGGCCCTGG TATACGCCCCGCTCGTCCTACCGCGAGGCTACCACTGTGGACTGCAATGACCTATTCCTG ACGGCAGTCCCCCCGGCACTCCCCGCAGGCACACAGACCCTGCTCCTGCAGAGCAACAGC ATTGTCCGTGTGGACCAGAGTGAGCTGGGCTACCTGGCCAATCTCACAGAGCTGGACCTG TCCCAGAACAGCTTTTCGGATGCCCGAGACTGTGATTTCCATGCCCTGCCCCAGCTGCTG AGCCTGCACCTAGAGGAGAACCAGCTGACCCGGCTGGAGGACCACAGCTTTGCAGGGCTG GCCAGCCTACAGGAACTCTATCTCAACCACAACCAGCTCTACCGCATCGCCCCCAGGGCC TTTTCTGGCCTCAGCAACTTGCTGCGGCTGCACCTCAACTCCAACCTCCTGAGGGCCATT GACAGCCGCTGGTTTGAAATGCTGCCCAACTTGGAGATACTCATGATTGGCGGCAACAAG GTAGATGCCATCCTGGACATGAACTTCCGGCCCCTGGCCAACCTGCGTAGCCTGGTGCTA GCAGGCATGAACCTGCGGGAGATCTCCGACTATGCCCTGGAGGGGCTGCAAAGCCTGGAG AGCCTCTCCTTCTATGACAACCAGCTGGCCCGGGTGCCCAGGCGGGCACTGGAACAGGTG CCCGGGCTCAAGTTCCTAGACCTCAACAAGAACCCGCTCCAGCGGGTAGGGCCGGGGGAC TTTGCCAACATGCTGCACCTTAAGGAGCTGGGACTGAACAACATGGAGGAGCTGGTCTCC ATCGACAAGTTTGCCCTGGTGAACCTCCCCGAGCTGACCAAGCTGGACATCACCAATAAC CCACGGCTGTCCTTCATCCACCCCCGCGCCTTCCACCACCTGCCCCAGATGGAGACCCTC ATGCTCAACAACAACGCTCTCAGTGCCTTGCACCAGCAGACGGTGGAGTCCCTGCCCAAC CTGCAGGAGGTAGGTCTCCACGGCAACCCCATCCGCTGTGACTGTGTCATCCGCTGGGCC AATGCCACGGGCACCCGTGTCCGCTTCATCGAGCCGCAATCCACCCTGTGTGCGGAGCCT CCGGACCTCCAGCGCCTCCCGGTCCGTGAGGTGCCCTTCCGGGAGATGACGGACCACTGT TTGCCCCTCATCTCCCCACGAAGCTTCCCCCCAAGCCTCCAGGTAGCCAGTGGAGAGAGC ATGGTGCTGCATTGCCGGGCACTGGCCGAACCCGAACCCGAGATCTACTGGGTCACTCCA GCTGGGCTTCGACTGACACCTGCCCATGCAGGCAGGAGGTACCGGGTGTACCCCGAGGGG ACCCTGGAGCTGCGGAGGGTGACAGCAGAAGAGGCAGGGCTATACACCTGTGTGGCCCAG AACCTGGTGGGGGCTGACACTAAGACGGTTAGTGTGGTTGTGGGCCGTGCTCTCCTCCAG CCAGGCAGGGACGAAGGACAGGGGCTGGAGCTCCGGGTGCAGGAGACCCACCCCTATCAC ATCCTGCTATCTTGGGTCACCCCACCCAACACAGTGTCCACCAACCTCACCTGGTCCAGT GCCTCCTCCCTCCGGGGCCAGGGGGCCACAGCTCTGGCCCGCCTGCCTCGGGGAACCCAC AGCTACAACATTACCCGCCTCCTTCAGGCCACGGAGTACTGGGCCTGCCTGCAAGTGGCC TTTGCTGATGCCCACACCCAGTTGGCTTGTGTATGGGCCAGGACCAAAGAGGCCACTTCT TGCCACAGAGCCTTAGGGGATCGTCCTGGGCTCATTGCCATCCTGGCTCTCGCTGTCCTT CTCCTGGCAGCTGGGCTAGCGGCCCACCTTGGCACAGGCCAACCCAGGAAGGGTGTGGGT GGGAGGCGGCCTCTCCCTCCAGCCTGGGCTTTCTGGGGCTGGAGTGCCCCTTCTGTCCGG GTTGTGTCTGCTCCCCTCGTCCTGCCCTGGAATCCAGGGAGGAAGCTGCCCAGATCCTCA GAAGGGGAGACACTGTTGCCACCATTGTCTCAAAATTCT
Cloned ORF protein sequence for pF1KB3232 Download>KIBB3232 713 aa MRLLVAPLLLAWVAGATATVPVVPWHVPCPPQCACQIRPWYTPRSSYREATTVDCNDLFL TAVPPALPAGTQTLLLQSNSIVRVDQSELGYLANLTELDLSQNSFSDARDCDFHALPQLL SLHLEENQLTRLEDHSFAGLASLQELYLNHNQLYRIAPRAFSGLSNLLRLHLNSNLLRAI DSRWFEMLPNLEILMIGGNKVDAILDMNFRPLANLRSLVLAGMNLREISDYALEGLQSLE SLSFYDNQLARVPRRALEQVPGLKFLDLNKNPLQRVGPGDFANMLHLKELGLNNMEELVS IDKFALVNLPELTKLDITNNPRLSFIHPRAFHHLPQMETLMLNNNALSALHQQTVESLPN LQEVGLHGNPIRCDCVIRWANATGTRVRFIEPQSTLCAEPPDLQRLPVREVPFREMTDHC LPLISPRSFPPSLQVASGESMVLHCRALAEPEPEIYWVTPAGLRLTPAHAGRRYRVYPEG TLELRRVTAEEAGLYTCVAQNLVGADTKTVSVVVGRALLQPGRDEGQGLELRVQETHPYH ILLSWVTPPNTVSTNLTWSSASSLRGQGATALARLPRGTHSYNITRLLQATEYWACLQVA FADAHTQLACVWARTKEATSCHRALGDRPGLIAILALAVLLLAAGLAAHLGTGQPRKGVG GRRPLPPAWAFWGWSAPSVRVVSAPLVLPWNPGRKLPRSSEGETLLPPLSQNS
Nucleotide Sequence (with vector) for pF1KB3232 Download>pF1KB3232 5252 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGAGGCTTCTC GTGGCCCCACTCTTGCTAGCTTGGGTGGCTGGTGCCACTGCCACTGTGCCCGTGGTACCC TGGCATGTTCCCTGCCCCCCTCAGTGTGCCTGCCAGATCCGGCCCTGGTATACGCCCCGC TCGTCCTACCGCGAGGCTACCACTGTGGACTGCAATGACCTATTCCTGACGGCAGTCCCC CCGGCACTCCCCGCAGGCACACAGACCCTGCTCCTGCAGAGCAACAGCATTGTCCGTGTG GACCAGAGTGAGCTGGGCTACCTGGCCAATCTCACAGAGCTGGACCTGTCCCAGAACAGC TTTTCGGATGCCCGAGACTGTGATTTCCATGCCCTGCCCCAGCTGCTGAGCCTGCACCTA GAGGAGAACCAGCTGACCCGGCTGGAGGACCACAGCTTTGCAGGGCTGGCCAGCCTACAG GAACTCTATCTCAACCACAACCAGCTCTACCGCATCGCCCCCAGGGCCTTTTCTGGCCTC AGCAACTTGCTGCGGCTGCACCTCAACTCCAACCTCCTGAGGGCCATTGACAGCCGCTGG TTTGAAATGCTGCCCAACTTGGAGATACTCATGATTGGCGGCAACAAGGTAGATGCCATC CTGGACATGAACTTCCGGCCCCTGGCCAACCTGCGTAGCCTGGTGCTAGCAGGCATGAAC CTGCGGGAGATCTCCGACTATGCCCTGGAGGGGCTGCAAAGCCTGGAGAGCCTCTCCTTC TATGACAACCAGCTGGCCCGGGTGCCCAGGCGGGCACTGGAACAGGTGCCCGGGCTCAAG TTCCTAGACCTCAACAAGAACCCGCTCCAGCGGGTAGGGCCGGGGGACTTTGCCAACATG CTGCACCTTAAGGAGCTGGGACTGAACAACATGGAGGAGCTGGTCTCCATCGACAAGTTT GCCCTGGTGAACCTCCCCGAGCTGACCAAGCTGGACATCACCAATAACCCACGGCTGTCC TTCATCCACCCCCGCGCCTTCCACCACCTGCCCCAGATGGAGACCCTCATGCTCAACAAC AACGCTCTCAGTGCCTTGCACCAGCAGACGGTGGAGTCCCTGCCCAACCTGCAGGAGGTA GGTCTCCACGGCAACCCCATCCGCTGTGACTGTGTCATCCGCTGGGCCAATGCCACGGGC ACCCGTGTCCGCTTCATCGAGCCGCAATCCACCCTGTGTGCGGAGCCTCCGGACCTCCAG CGCCTCCCGGTCCGTGAGGTGCCCTTCCGGGAGATGACGGACCACTGTTTGCCCCTCATC TCCCCACGAAGCTTCCCCCCAAGCCTCCAGGTAGCCAGTGGAGAGAGCATGGTGCTGCAT TGCCGGGCACTGGCCGAACCCGAACCCGAGATCTACTGGGTCACTCCAGCTGGGCTTCGA CTGACACCTGCCCATGCAGGCAGGAGGTACCGGGTGTACCCCGAGGGGACCCTGGAGCTG CGGAGGGTGACAGCAGAAGAGGCAGGGCTATACACCTGTGTGGCCCAGAACCTGGTGGGG GCTGACACTAAGACGGTTAGTGTGGTTGTGGGCCGTGCTCTCCTCCAGCCAGGCAGGGAC GAAGGACAGGGGCTGGAGCTCCGGGTGCAGGAGACCCACCCCTATCACATCCTGCTATCT TGGGTCACCCCACCCAACACAGTGTCCACCAACCTCACCTGGTCCAGTGCCTCCTCCCTC CGGGGCCAGGGGGCCACAGCTCTGGCCCGCCTGCCTCGGGGAACCCACAGCTACAACATT ACCCGCCTCCTTCAGGCCACGGAGTACTGGGCCTGCCTGCAAGTGGCCTTTGCTGATGCC CACACCCAGTTGGCTTGTGTATGGGCCAGGACCAAAGAGGCCACTTCTTGCCACAGAGCC TTAGGGGATCGTCCTGGGCTCATTGCCATCCTGGCTCTCGCTGTCCTTCTCCTGGCAGCT GGGCTAGCGGCCCACCTTGGCACAGGCCAACCCAGGAAGGGTGTGGGTGGGAGGCGGCCT CTCCCTCCAGCCTGGGCTTTCTGGGGCTGGAGTGCCCCTTCTGTCCGGGTTGTGTCTGCT CCCCTCGTCCTGCCCTGGAATCCAGGGAGGAAGCTGCCCAGATCCTCAGAAGGGGAGACA CTGTTGCCACCATTGTCTCAAAATTCTGTTTAAACGAATTCGAGCTCGGTACCCGGGGAT CCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGA AGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAA ACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCA TAAAACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTT TGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCA CCGTTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGA GTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTT GGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGG GGATCAAGATCTGATCAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGA TTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAA CAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTT CTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGG CTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAA GCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCAC CTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTT GATCCGGCTACCTGCCCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACT CGGATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCG CCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTG ACTCATGGCGATGCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTC ATCGACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGT GATATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATC GCCGCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCG GGACTCTGGGGTTCGAAATGACCGACCAAGCGACGCCCAACCGGACTATAAAAGGATCTA GGTGAAGATCCTTTTTGATAATCTCATGACCAAAATCCCTTAACGTGAGTTTTCGTTCCA CTGAGCGTCAGACCCCGTAGAAAAGATCAAAGGATCTTCTTGAAATCCTTTTTTTCTGCG CGTAATCTGCTGCTTGCAAACAAAAAAACCACCGCTACCAGCGGTGGTTTGTTTGCCGGA TCAAGAGCTACCAACTCTTTTTCCGAAGGTAACTGGCTTCAGCAGAGCGCAGATACCAAA TACTGTCCTTCTAGTGTAGCCGTAGTTAGGCCACCACTTCAAGAACTCTGTAGCACCGCC TACATACCTCGCTCTGCTAATCCTGTTACCAGTGGCTGCTGCCAGTGGCGATAAGTCGTG TCTTACCGGGTTGGACTCAAGACGATAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAAC GGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCT ACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCC GGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTG GTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATG CTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCT GGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGA TAACCGTATTACCGCCTTTGAGTGAGCTGATACCGGAAATACAGGAACGCACGCTGGATG GCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGT AATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCG ATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCG CTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTG CCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGA TCGAGATCTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACA GAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGT GAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCA GGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTT TGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGA AGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTA AGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTT TTCTAAATACATTCAAATATGTATCCGCTCAT
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