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SpecieshumanProduct IDFXC10743Cloning SiteSgfI-PmeIGeneKIEE0070SymbolGP5
Alias : CD42d, GPVDescriptionglycoprotein V (platelet)Original Clone IDoc00770
Length: 1680 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 560 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS3307.1 2.3e-141 100.0 GP5 CCDS3306.1 9.1e-31 34.2 LRRC15 CCDS46984.1 9.2e-31 34.2 LRRC15 CCDS33920.1 1.2e-16 32.7 CPN2 CCDS75111.1 2.9e-14 27.0 SLIT2
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition FPrintScan NULL 172 185 PR00019 NULL NULL 241 254 PR00019 NULL HMMPfam IPR001611 99 118 PF00560 Leucine-rich repeat IPR001611 171 190 PF00560 Leucine-rich repeat HMMSmart IPR003591 73 96 SM00369 Leucine-rich repeat IPR003591 97 120 SM00369 Leucine-rich repeat IPR003591 121 144 SM00369 Leucine-rich repeat IPR003591 145 168 SM00369 Leucine-rich repeat IPR003591 169 192 SM00369 Leucine-rich repeat IPR003591 194 216 SM00369 Leucine-rich repeat IPR003591 217 240 SM00369 Leucine-rich repeat IPR003591 241 264 SM00369 Leucine-rich repeat IPR003591 266 288 SM00369 Leucine-rich repeat IPR003591 289 312 SM00369 Leucine-rich repeat IPR003591 313 337 SM00369 Leucine-rich repeat IPR003591 338 361 SM00369 Leucine-rich repeat IPR003591 362 385 SM00369 Leucine-rich repeat IPR003591 386 409 SM00369 Leucine-rich repeat IPR000483 421 473 SM00082 Cysteine-rich flanking region ProfileScan IPR001611 99 120 PS51450 Leucine-rich repeat IPR001611 123 144 PS51450 Leucine-rich repeat IPR001611 147 168 PS51450 Leucine-rich repeat IPR001611 171 193 PS51450 Leucine-rich repeat IPR001611 195 216 PS51450 Leucine-rich repeat IPR001611 219 240 PS51450 Leucine-rich repeat IPR001611 243 264 PS51450 Leucine-rich repeat IPR001611 267 288 PS51450 Leucine-rich repeat IPR001611 291 312 PS51450 Leucine-rich repeat IPR001611 340 361 PS51450 Leucine-rich repeat IPR001611 364 385 PS51450 Leucine-rich repeat IPR001611 388 409 PS51450 Leucine-rich repeat
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 4 GTLLCAVLGLLRAQPFPCPPACK 26 SECONDARY 23 2 525 YFLLLAVQAMITVIIVFAMIKIG 547 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_004479 560 173511 100.0 100.0 XP_005269337 545 603104 32.7 85.0 NP_001278917 545 603104 32.7 85.0 NP_001073982 545 603104 32.7 85.0 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KE0070 Download>KIEE0070 1680 bp ATGCTGAGGGGGACTCTACTGTGCGCGGTGCTCGGGCTTCTGCGCGCCCAGCCCTTCCCC TGTCCGCCAGCTTGCAAGTGTGTCTTCCGGGACGCCGCGCAGTGCTCGGGGGGCGACGTG GCGCGCATCTCCGCGCTAGGCCTGCCCACCAACCTCACGCACATCCTGCTCTTCGGAATG GGCCGCGGCGTCCTGCAGAGCCAGAGCTTCAGCGGCATGACCGTCCTGCAGCGCCTCATG ATCTCCGACAGCCACATTTCCGCCGTTGCCCCCGGCACCTTCAGTGACCTGATAAAACTG AAAACCCTGAGGCTGTCGCGCAACAAAATCACGCATCTTCCAGGTGCGCTGCTGGATAAG ATGGTGCTCCTGGAGCAGTTGTTTTTGGACCACAATGCGCTAAGGGGCATTGACCAAAAC ATGTTTCAGAAACTGGTTAACCTGCAGGAGCTCGCTCTGAACCAGAATCAGCTCGATTTC CTTCCTGCCAGTCTCTTCACGAATCTGGAGAACCTGAAGTTGTTGGATTTATCGGGAAAC AACCTGACCCACCTGCCCAAGGGGTTGCTTGGAGCACAGGCTAAGCTCGAGAGACTTCTG CTCCACTCGAACCGCCTTGTGTCTCTGGATTCGGGGCTGTTGAACAGCCTGGGCGCCCTG ACGGAGCTGCAGTTCCACCGAAATCACATCCGTTCCATCGCACCCGGGGCCTTCGACCGG CTCCCAAACCTCAGTTCTTTGACGCTTTCGAGAAACCACCTTGCGTTTCTCCCCTCTGCG CTCTTTCTTCATTCGCACAATCTGACTCTGTTGACTCTGTTCGAGAACCCGCTGGCAGAG CTCCCGGGGGTGCTCTTCGGGGAGATGGGGGGCCTGCAGGAGCTGTGGCTGAACCGCACC CAGCTGCGCACCCTGCCCGCCGCCGCCTTCCGCAACCTGAGCCGCCTGCGGTACTTAGGG GTGACTCTGAGCCCGCGGCTGAGCGCGCTTCCGCAGGGCGCCTTCCAGGGCCTTGGCGAG CTCCAGGTGCTCGCCCTGCACTCCAACGGCCTGACCGCCCTCCCCGACGGCTTGCTGCGC GGCCTCGGCAAGCTGCGCCAGGTGTCCCTGCGCCGCAACAGGCTGCGCGCCCTGCCCCGT GCCCTCTTCCGCAATCTCAGCAGCCTGGAGAGCGTCCAGCTCGACCACAACCAGCTGGAG ACCCTGCCTGGCGACGTGTTTGGGGCTCTGCCCCGGCTGACGGAGGTCCTGTTGGGGCAC AACTCCTGGCGCTGCGACTGTGGCCTGGGGCCCTTCCTGGGGTGGCTGCGGCAGCACCTA GGCCTCGTGGGCGGGGAAGAGCCCCCACGGTGCGCAGGCCCTGGGGCGCACGCCGGCCTG CCGCTCTGGGCCCTGCCGGGGGGTGACGCGGAGTGCCCGGGCCCCCGGGGCCCGCCTCCC CGCCCCGCTGCGGACAGCTCCTCGGAAGCCCCTGTCCACCCAGCCTTGGCTCCCAACAGC TCAGAACCCTGGGTGTGGGCCCAGCCGGTGACCACGGGCAAAGGTCAAGATCATAGTCCG TTCTGGGGGTTTTATTTTCTGCTTTTAGCTGTTCAGGCCATGATCACCGTGATCATCGTG TTTGCTATGATTAAAATTGGCCAACTCTTTCGAAAATTAATCAGAGAGAGAGCCCTTGGG
Cloned ORF protein sequence for pF1KE0070 Download>KIEE0070 560 aa MLRGTLLCAVLGLLRAQPFPCPPACKCVFRDAAQCSGGDVARISALGLPTNLTHILLFGM GRGVLQSQSFSGMTVLQRLMISDSHISAVAPGTFSDLIKLKTLRLSRNKITHLPGALLDK MVLLEQLFLDHNALRGIDQNMFQKLVNLQELALNQNQLDFLPASLFTNLENLKLLDLSGN NLTHLPKGLLGAQAKLERLLLHSNRLVSLDSGLLNSLGALTELQFHRNHIRSIAPGAFDR LPNLSSLTLSRNHLAFLPSALFLHSHNLTLLTLFENPLAELPGVLFGEMGGLQELWLNRT QLRTLPAAAFRNLSRLRYLGVTLSPRLSALPQGAFQGLGELQVLALHSNGLTALPDGLLR GLGKLRQVSLRRNRLRALPRALFRNLSSLESVQLDHNQLETLPGDVFGALPRLTEVLLGH NSWRCDCGLGPFLGWLRQHLGLVGGEEPPRCAGPGAHAGLPLWALPGGDAECPGPRGPPP RPAADSSSEAPVHPALAPNSSEPWVWAQPVTTGKGQDHSPFWGFYFLLLAVQAMITVIIV FAMIKIGQLFRKLIRERALG
Nucleotide Sequence (with vector) for pF1KE0070 Download>pF1KE0070 4793 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGCTGAGGGGG ACTCTACTGTGCGCGGTGCTCGGGCTTCTGCGCGCCCAGCCCTTCCCCTGTCCGCCAGCT TGCAAGTGTGTCTTCCGGGACGCCGCGCAGTGCTCGGGGGGCGACGTGGCGCGCATCTCC GCGCTAGGCCTGCCCACCAACCTCACGCACATCCTGCTCTTCGGAATGGGCCGCGGCGTC CTGCAGAGCCAGAGCTTCAGCGGCATGACCGTCCTGCAGCGCCTCATGATCTCCGACAGC CACATTTCCGCCGTTGCCCCCGGCACCTTCAGTGACCTGATAAAACTGAAAACCCTGAGG CTGTCGCGCAACAAAATCACGCATCTTCCAGGTGCGCTGCTGGATAAGATGGTGCTCCTG GAGCAGTTGTTTTTGGACCACAATGCGCTAAGGGGCATTGACCAAAACATGTTTCAGAAA CTGGTTAACCTGCAGGAGCTCGCTCTGAACCAGAATCAGCTCGATTTCCTTCCTGCCAGT CTCTTCACGAATCTGGAGAACCTGAAGTTGTTGGATTTATCGGGAAACAACCTGACCCAC CTGCCCAAGGGGTTGCTTGGAGCACAGGCTAAGCTCGAGAGACTTCTGCTCCACTCGAAC CGCCTTGTGTCTCTGGATTCGGGGCTGTTGAACAGCCTGGGCGCCCTGACGGAGCTGCAG TTCCACCGAAATCACATCCGTTCCATCGCACCCGGGGCCTTCGACCGGCTCCCAAACCTC AGTTCTTTGACGCTTTCGAGAAACCACCTTGCGTTTCTCCCCTCTGCGCTCTTTCTTCAT TCGCACAATCTGACTCTGTTGACTCTGTTCGAGAACCCGCTGGCAGAGCTCCCGGGGGTG CTCTTCGGGGAGATGGGGGGCCTGCAGGAGCTGTGGCTGAACCGCACCCAGCTGCGCACC CTGCCCGCCGCCGCCTTCCGCAACCTGAGCCGCCTGCGGTACTTAGGGGTGACTCTGAGC CCGCGGCTGAGCGCGCTTCCGCAGGGCGCCTTCCAGGGCCTTGGCGAGCTCCAGGTGCTC GCCCTGCACTCCAACGGCCTGACCGCCCTCCCCGACGGCTTGCTGCGCGGCCTCGGCAAG CTGCGCCAGGTGTCCCTGCGCCGCAACAGGCTGCGCGCCCTGCCCCGTGCCCTCTTCCGC AATCTCAGCAGCCTGGAGAGCGTCCAGCTCGACCACAACCAGCTGGAGACCCTGCCTGGC GACGTGTTTGGGGCTCTGCCCCGGCTGACGGAGGTCCTGTTGGGGCACAACTCCTGGCGC TGCGACTGTGGCCTGGGGCCCTTCCTGGGGTGGCTGCGGCAGCACCTAGGCCTCGTGGGC GGGGAAGAGCCCCCACGGTGCGCAGGCCCTGGGGCGCACGCCGGCCTGCCGCTCTGGGCC CTGCCGGGGGGTGACGCGGAGTGCCCGGGCCCCCGGGGCCCGCCTCCCCGCCCCGCTGCG GACAGCTCCTCGGAAGCCCCTGTCCACCCAGCCTTGGCTCCCAACAGCTCAGAACCCTGG GTGTGGGCCCAGCCGGTGACCACGGGCAAAGGTCAAGATCATAGTCCGTTCTGGGGGTTT TATTTTCTGCTTTTAGCTGTTCAGGCCATGATCACCGTGATCATCGTGTTTGCTATGATT AAAATTGGCCAACTCTTTCGAAAATTAATCAGAGAGAGAGCCCTTGGGGTTTAAACGAAT TCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGC TGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGC ATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTAT ATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACT GCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCT GACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCT TTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCT GGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCG CCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAGACAGGATGACGGTCGTTT CGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTA TTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTG TCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAA CTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCT GTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGG CAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCA ATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCATTCGACCACCAAGCGAAACAT CGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGAC GAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCG GATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTGCCGAATATCATGGTGGAA AATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAG GACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGC TTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTT CTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAATGACCGACCAAGCGACGCCCA ACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGC AGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTT GCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAG TCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTC CCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCC TTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGT CGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTT ATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGC AGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAA GTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAA GCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGG TAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGA AGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGG GATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAA TACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGC TTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATAC GGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTAC CTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTAT GGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCA CGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGATACAGATTAAATCAGAACG CAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGA CCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCA TGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGG CCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGG GAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCAT AAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTC TACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCAT
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