Gene/Protein Characteristic Table for KIAA1322
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Product ID ORK00802
Accession No AB037743
Description TBC1 domain family, member 14, transcript variant 1
Clone name fh13826
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (4832 bp)
Predicted protein sequence (702 aa)
Flexi ORF Clone FXC00802
Source Human fetal brain
Rouge ID mKIAA1322 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 4832 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 2721 bp
Genome contig ID gi89161207f_6875999
PolyA signal sequence
(AATAAA,-24)
+----*----+----*----+----*----+----
TGGTTTTATTAAATAAAAGTCAATGTAAAATTGTT
Flanking genome sequence
(209744 - 209793)
----+----*----+----*----+----*----+----*----+----*
ACTTATGTTCACCATCGTTTGTTTAAAGTTGAAGTTCTCACTTTGAGCAT

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 4 f 6975999 7085741 13 99.3 Terminal No-hit
Features of the protein sequence
Description

Length: 702 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
XP_526514 0 99.7 TBC1 domain fam...
Pan troglodytes
XP_001118829 0 98.9 similar to TBC1...
Macaca mulatta
BAG10032 0 100.0 TBC1 domain fam...
synthetic construct
Q9P2M4 0 99.9 TBC1 domain fam...
Homo sapiens
AAH41167 0 99.9 TBC1 domain fam...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB011180 1.4e-93 70.6 KIAA0608
D13644 7.7e-10 26.9 KIAA0019
AB029031 6.1e-09 20.8 KIAA1108
AB011175 1.3e-08 21.2 KIAA0603
AB028978 5.9e-07 23.4 KIAA1055
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR000195 409 641 PF00566 RabGAP/TBC
HMMSmart IPR000195 407 643 SM00164 RabGAP/TBC
ProfileScan IPR000195 410 620 PS50086 RabGAP/TBC
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f GCTGTTGGCAAGTGTAGAGGC
Primer_r TGTGAAGTGGAGTGTGCAGAC
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 4
Experimental conditions
Panel name GeneBridge 4
Primer_f GCTGTTGGCAAGTGTAGAGGC
Primer_r TGTGAAGTGGAGTGTGCAGAC
PCR product length 103 bp
PCR conditions 95 °C15 sec66 °C60 sec30 cycles
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