Gene/Protein Characteristic Table for KIAA1108
Order Kazusa clone(s) from : Japan || Other countries
Product ID ORK07061
Accession No AB029031
Description TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1
Clone name hh03387s1
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (2576 bp)
Predicted protein sequence (763 aa)
Source Human adult brain
Rouge ID mKIAA1108 by Kazusa Mouse cDNA Project
Note We replaced hh03387, former representative clones for KIAA1108 with hh03387s1. (2002/5/10)
Features of the cloned cDNA sequence
Description

Length: 2576 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 284 bp
Genome contig ID gi89161207f_37605809
PolyA signal sequence
(AATAAA,-21)
+----*----+----*----+----*----+----
ATGGCGTGGACGTGAATAAATGCAACTTATGTTTT
Flanking genome sequence
(209828 - 209877)
----+----*----+----*----+----*----+----*----+----*
CTTGTTGGTTCCTTTTTGAGTGTCACTGTGTTTGTAAAGAGCATTCACAA

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 4 f 37705809 37815635 14 100.0 Perfect prediction
Features of the protein sequence
Description

Length: 763 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
AAH53648 0 100.0 TBC1D1 protein ...
Homo sapiens
AAH14529 0 100.0 TBC1D1 protein ...
Homo sapiens
EAW92889 0 100.0 hCG39018 [Homo ...
Homo sapiens
Q86TI0 0 100.0 TBC1 domain fam...
Homo sapiens
AAH50321 0 99.9 TBC1 (tre-2/USP...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB011175 3.5e-82 52.3 KIAA0603
D13644 4.3e-13 26.9 KIAA0019
AB028978 1.1e-10 24.7 KIAA1055
AB020689 1.9e-10 27.4 KIAA0882
AB014576 6.3e-09 24.0 KIAA0676
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR000195 392 611 PF00566 RabGAP/TBC
HMMSmart IPR000195 392 612 SM00164 RabGAP/TBC
ProfileScan IPR000195 395 589 PS50086 RabGAP/TBC
ScanRegExp IPR001220 121 127 PS00307 Legume lectin
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f CTCCAACTTGCAATTCAGGGG
Primer_r GCATTTATTCACGTCCACGCC
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 4
Experimental conditions
Panel name UniGene
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
Order Kazusa clone(s) from : Japan || Other countries
Back to the HUGE Protein Database homepage
Send a message to office AT kazusa.or.jp