Gene/Protein Characteristic Table for KIAA0618
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Product ID ORK05613
Accession No AB014518
Description POM121 transmembrane nucleoporin
Clone name hg03971
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (7011 bp)
Predicted protein sequence (1052 aa)
Source Human adult brain
Rouge ID mKIAA0618 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 7011 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 2970 bp
Genome contig ID gi89161213f_71887872
PolyA signal sequence
(AATAAA,-18)
+----*----+----*----+----*----+----
GCAGGACATGCCTTGTTAATAAAACGTTTACAAGC
Flanking genome sequence
(172045 - 172094)
----+----*----+----*----+----*----+----*----+----*
AGTATGCTTGGTAAAAGTCTTCGCCGTTCTCTAGTCTCAATAAACCAGAG

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 7 f 71987872 72059915 16 99.2 Perfect prediction
Ensembl gnome browser 7 r 74880858 74995379 18 97.4 Perfect prediction
Features of the protein sequence
Description

Length: 1052 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q96HA1 0 99.9 Nuclear envelop...
Homo sapiens
A8CG34 0 97.1 Nuclear envelop...
Homo sapiens
AAH08794 0 99.9 POM121 membrane...
Homo sapiens
BAF85237 0 99.7 unnamed protein...
Homo sapiens
XP_001110260 0 93.2 nuclear pore me...
Macaca mulatta
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
D14689 5.5e-06 26.1 KIAA0023
AB029037 0.00073 27.8 KIAA1114
AB051468 0.00082 23.9 KIAA1681
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Expression profile
Description

RT-PCR
RT-PCR-ELISA
Experimental conditions
Primer_f CCGACCCATGCAGAAATAGGC
Primer_r CCTTCTGCCCTACCATGTTGC
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 7
Experimental conditions
Panel name GeneBridge 4
Primer_f CCGACCCATGCAGAAATAGGC
Primer_r CCTTCTGCCCTACCATGTTGC
PCR product length 141 bp
PCR conditions 95 °C15 sec66 °C60 sec30 cycles
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