ROUGE

Gene/Protein Characteristic Table for mKIAA1583

Link to : HUGE \| InGAP \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK173207
Description :	heat shock 70kDa protein 5 binding protein 1.
Clone Name :	mbh02738 [Vector Info]
Source :	Mouse brain

Features of the cloned DNA sequence	Description

Length: 3473 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 275 bp

Genome contig ID gi65553144r_9954331
PolyA signal sequence
(AATAAA,-21)
+----*----+----*----+----*----+----
ACTGTTGGGTACAGAATAAATGAGAAAAGAATGGG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
CATAGCTGGTACTGCTGTGACACTCTCTGTCAGGGTGGGTGGAGACCATT

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA1583 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA1583	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 97..3198
Length: 1033 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q922P8	100.0	Transmembrane p...	Mus musculus
EDM12844	96.4	rCG47487, isofo...	Rattus norvegicus
Q80WF4	95.7	Transmembrane p...	Rattus norvegicus
XP_522023	87.4	transmembrane p...	Pan troglodytes
Q24JP5	87.4	Transmembrane p...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	ROUGE_ID
AK220418	1.1e-05	29.0	mKIAA1786

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

None - - - - -

Search method	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 26 48 GPYGAWFCLLVALALEVVRVSSN

858 880 GMYALLGIFCLAILIFLVNGVVF

Method	From	To	amino acid sequence
SOSUI	26	48	GPYGAWFCLLVALALEVVRVSSN
858	880	GMYALLGIFCLAILIFLVNGVVF

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	275 bp
Genome contig ID	gi65553144r_9954331
PolyA signal sequence (AATAAA,-21)	+--------+--------+----*----+---- ACTGTTGGGTACAGAATAAATGAGAAAAGAATGGG
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* CATAGCTGGTACTGCTGTGACACTCTCTGTCAGGGTGGGTGGAGACCATT

Gene/Protein Characteristic Table for mKIAA1583

Features of the cloned DNA sequence

Features of the protein sequence