FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1583.ptfa, 1033 aa
 vs ./tmplib.26680 library

1767984 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 6.3016+/-0.00558; mu= 13.5262+/- 0.373
 mean_var=168.7603+/-42.454, 0's: 0 Z-trim: 1  B-trim: 89 in 1/35
 Lambda= 0.0987

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1786  ( 405 res)   mbp11245                   ( 405)  239   46 1.1e-05


>>mKIAA1786  ( 405 res)   mbp11245                        (405 aa)
 initn: 329 init1: 115 opt: 239  Z-score: 194.4  bits: 46.2 E(): 1.1e-05
Smith-Waterman score: 520;  29.000% identity (33.143% ungapped) in 400 aa overlap (54-413:8-397)

            30        40        50        60        70        80   
mKIAA1 PRGPYGAWFCLLVALALEVVRVSSNHDTLDPIYLPVALELLDAPEHFRVQQVGHYPPANS
                                     : :::..... :: : : ......    :.
mKIAA1                        LQRFSSLPAYLPAGFHVTDAEEAFFLKEANQDLMRNA
                                      10        20        30       

            90       100         110        120             130    
mKIAA1 SLASRSETFLLMQPWPRAQ--PLLRASYPPFATQQVVP-PRVTEP------HRRPVPWDV
       :: .:: :...     :::  : . ::: ::.....::   .  :      .: :  : .
mKIAA1 SLQARSATLFIH----RAQSPPAINASYGPFSVEKTVPWDFLLMPTPFGNMERFPFNWRL
        40            50        60        70        80        90   

          140       150       160         170       180       190  
mKIAA1 RAVSVEAAVTPAEPYARVLFHLKGQDWPPG-PGS-LPCARLHATHPAGTAHRACRFQPSL
       ..  .....   .: ...::.. :. :  . ::. :::... :   :  .  .::.: . 
mKIAA1 KSHILDSSIFSNRPKVQTLFYVTGMGWDENDPGDDLPCVKMFAFPEAREVAASCRLQGAP
           100       110       120       130       140       150   

            200                    210       220       230         
mKIAA1 GACVVELQFPSHWFSQS-------------ATTRAELAYTLEPAGEGPGGCGLGTE----
       : ::.::..  .:::..             . :  :: ..: ::.:. : : :  :    
mKIAA1 GLCVAELELLPEWFSSGLDLEPQEEIPALLGGTAMELYFALYPANEA-GQCPLEEEGKWE
           160       170       180       190       200        210  

                240           250        260       270       280   
mKIAA1 -------EEPREQALP----VGGVELHP-EDPPQYQEVPLDEAVTLRAPDVPMRPGQLFT
              ::: . .::    .:.: ..: .:  ... : ::. :.:  :   .: :.  :
mKIAA1 NNIHSEQEEP-QPVLPARERIGSVVVYPTQDDLRWSLVTLDDNVALSIPLNLIREGDTAT
            220        230       240       250       260       270 

           290       300       310       320       330       340   
mKIAA1 ATLLLRHNFTASLLTLRIKVKKGLQVIAARPAQPTLWTAKLDRFKGSKHHTSLITCHRAG
         . :  .  :  .:::::.  :... :.: ..   :... .  . . . :....:    
mKIAA1 FLVSLTSGSLAEKFTLRIKAAAGVKITAVRVSHEDQWAVQEEIEQDGTQTTAVLSCMGHH
             280       290       300       310       320       330 

           350       360       370       380       390       400   
mKIAA1 PAGPDSSPLELSEFLWVDFAVENSTGGGVAVTRPVTWQLEYPGQAPEAEKDKMVWEILVS
       :   . .   . :.: :::.:.::..  .: .. .:::.:::  . .. .. .: ::..:
mKIAA1 PDTQSRANGSFYEILQVDFGVDNSSS--LAGAQQITWQVEYP--VEDSMSELFVSEIFIS
             340       350         360       370         380       

           410       420       430       440       450       460   
mKIAA1 ERDIRALIPLAKAEELVNTAPLTGVPQRIPVRLVTVDSGGALEEVTEHIGCESANTQVLQ
       .  . ...::.                                                 
mKIAA1 QTTFVGIVPLTMVRKQGS                                          
       390       400                                               




1033 residues in 1 query   sequences
1767984 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:48:49 2006 done: Mon Mar 27 10:48:50 2006
 Scan time:  1.040 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]