ROUGE

Gene/Protein Characteristic Table for mKIAA1177

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK002890
Description :	XPA-binding protein 2.
Clone Name :	msk07057 [Vector Info]
Source :	Mouse adult spleen

Features of the cloned DNA sequence	Description

Length: 1171 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA1177 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA1177	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 1..1101
Length: 366 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
EDL74938	5.6e-145	100.0	XPA binding pro...	Rattus norvegicus
EDL74939	9.8e-145	100.0	XPA binding pro...	Rattus norvegicus
Q9DCD2	1.1e-144	100.0	Pre-mRNA-splici...	Mus musculus
Q99PK0	1.1e-144	100.0	Pre-mRNA-splici...	Rattus norvegicus
AAH21341	2.3e-144	99.7	XPA binding pro...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	ROUGE_ID
AK129080	4.2e-05	22.0	mKIAA0185

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMSmart IPR003107 9 41 SM00386 RNA-processing protein

IPR003107 43 77 SM00386 RNA-processing protein

IPR003107 82 116 SM00386 RNA-processing protein

IPR003107 190 224 SM00386 RNA-processing protein

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

- - - -

Search method	interpro_ID	From	To	Entry	Definition
HMMSmart	IPR003107	9	41	SM00386	RNA-processing protein
IPR003107	43	77	SM00386	RNA-processing protein
IPR003107	82	116	SM00386	RNA-processing protein
IPR003107	190	224	SM00386	RNA-processing protein

Method	From	To	amino acid sequence
-	-	-	-

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Gene/Protein Characteristic Table for mKIAA1177

Features of the cloned DNA sequence

Features of the protein sequence