hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/msk/msk07057/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1177  ( 366 res)   msk07057

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
HAT      HAT (Half-A-TPR) repeats                        77.5    1.6e-18   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
HAT        1/4       9    41 ..     1    34 []    12.3       27
HAT        2/4      43    77 ..     1    34 []    15.1      9.9
HAT        3/4      82   116 ..     1    34 []    32.3  6.5e-05
HAT        4/4     190   224 ..     1    34 []    19.5     0.49

Alignments of top-scoring domains:
HAT: domain 1 of 4, from 9 to 41: score 12.3, E = 27
                   *->gdieraRkiyeralekfpdksvdlWlkYaefEer<-*
                      g ++   ++y+r l+      +++ + Ya+f+e+   
   mKIAA1177     9    GTFQSTKAVYDRILDLRI-ATPQIVINYAMFLEE    41   

HAT: domain 2 of 4, from 43 to 77: score 15.1, E = 9.9
                   *->gdieraRkiyeralekfp.dksvdlWlkYaefEer<-*
                      +++e+  k yer++  f   ++ d+W  Y+   ++   
   mKIAA1177    43    KYFEESFKAYERGISLFKwPNVSDIWSTYLTKFIS    77   

HAT: domain 3 of 4, from 82 to 116: score 32.3, E = 6.5e-05
                   *->gdieraRkiyeralekfp.dksvdlWlkYaefEer<-*
                      ++ eraR+++e+al+ +p+ + + l+l Ya++Ee+   
   mKIAA1177    82    RKLERARDLFEQALDGCPpKYAKTLYLLYAQLEEE    116  

HAT: domain 4 of 4, from 190 to 224: score 19.5, E = 0.49
                   *->gdieraRkiyeralekfp.dksvdlWlkYaefEer<-*
                      g+i+raR+iy  +   + + +   +W+ + +fE r   
   mKIAA1177   190    GEIDRARAIYSFCSQICDpRTTGAFWQTWKDFEVR    224  

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