FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1177.ptfa, 366 aa
 vs ./tmplib.26680 library

1768651 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.9608+/-0.00485; mu= 13.0827+/- 0.325
 mean_var=108.6209+/-24.220, 0's: 0 Z-trim: 1  B-trim: 25 in 1/35
 Lambda= 0.1231

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0185  ( 1866 res)   mpf00482                  (1866)  190   45 4.2e-05


>>mKIAA0185  ( 1866 res)   mpf00482                       (1866 aa)
 initn: 103 init1:  77 opt: 190  Z-score: 183.9  bits: 45.0 E(): 4.2e-05
Smith-Waterman score: 190;  22.041% identity (24.434% ungapped) in 245 aa overlap (1-235:1583-1813)

                                                10        20       
mKIAA1                               LADLEESL---GTFQSTKAVYDRILDLRIA
                                     :. .::.:   :    .   .::..     
mKIAA0 SDSEDEQLHQAKKKKGKKERELEKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPN
           1560      1570      1580      1590      1600      1610  

        30        40        50           60        70        80    
mKIAA1 TPQIVINYAMFLEEHKYFEESFKAYERG---ISLFKWPNVSDIWSTYLTKFISRYGGRKL
       .  . ..:  :  .   .:..  . ::.   ::. .  .  ..: . :. . . ::..  
mKIAA0 SSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLN-LENMYGSQ--
           1620      1630      1640      1650      1660            

           90       100        110       120       130       140   
mKIAA1 ERARDLFEQALDGCPP-KYAKTLYLLYAQLEEEWGLARHAMAVYDRATRAVEPAQQYDMF
       :    .::.:..   : :    :  .:.. :.     ..:  .:.:  .  .  .     
mKIAA0 ESLTKVFERAVQYNEPLKVFLHLADIYTKSEKY----KEAGELYNRMLKRFRQEKA----
    1670      1680      1690      1700          1710      1720     

           150          160       170       180       190       200
mKIAA1 NIYIKRAAEIYGVTH---TRGIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIYS
        ..:: .: . : ..   .. . :.:.: :  ..  .. ..::..: .::...::.::. 
mKIAA0 -VWIKYGAFVLGRSQAGASHRVLQRALECLPAKEHVDVIVKFAQLEFQLGDVERAKAIFE
             1730      1740      1750      1760      1770      1780

              210       220       230       240       250       260
mKIAA1 FCSQICDPRTTGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQATYNTQVNFMASQMLKVS
         .    :. : . :... :. ..::.. ..:....                        
mKIAA0 -NTLSTYPKRTDV-WSVYIDMTIKHGSQTAVRDIFERVIHLSLAPKRMKFFFKRYLDYEK
              1790       1800      1810      1820      1830        

              270       280       290       300       310       320
mKIAA1 GSATGTVSDLAPGQSGMDDMKLLEQRAEQLAAEAERDQPPRAQSKIFFVRSDASREELAE
                                                                   
mKIAA0 QHGTEKDVQAVKAKALEYVEAKSSALED                                
     1840      1850      1860                                      




366 residues in 1 query   sequences
1768651 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:37:50 2006 done: Mon Mar 27 10:37:50 2006
 Scan time:  0.590 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]