# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/msk07057.fasta.nr -Q ../query/mKIAA1177.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1177, 366 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7920697 sequences Expectation_n fit: rho(ln(x))= 5.3795+/-0.000183; mu= 8.8569+/- 0.010 mean_var=76.9434+/-14.944, 0's: 44 Z-trim: 50 B-trim: 0 in 0/67 Lambda= 0.146214 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|149015557|gb|EDL74938.1| XPA binding protein 2, ( 367) 2417 519.1 5.6e-145 gi|149015558|gb|EDL74939.1| XPA binding protein 2, ( 750) 2417 519.4 9.8e-145 gi|25091545|sp|Q9DCD2.1|SYF1_MOUSE RecName: Full=P ( 855) 2417 519.4 1.1e-144 gi|25091510|sp|Q99PK0.1|SYF1_RAT RecName: Full=Pre ( 855) 2417 519.4 1.1e-144 gi|18204681|gb|AAH21341.1| XPA binding protein 2 [ ( 855) 2412 518.4 2.3e-144 gi|74219245|dbj|BAE26756.1| unnamed protein produc ( 855) 2397 515.2 2e-143 gi|73986880|ref|XP_868264.1| PREDICTED: similar to ( 832) 2381 511.8 2.1e-142 gi|73986874|ref|XP_542113.2| PREDICTED: similar to ( 852) 2381 511.8 2.1e-142 gi|73986876|ref|XP_868258.1| PREDICTED: similar to ( 854) 2381 511.8 2.1e-142 gi|73986878|ref|XP_854173.1| PREDICTED: similar to ( 867) 2381 511.8 2.1e-142 gi|109123174|ref|XP_001090436.1| PREDICTED: XPA bi ( 858) 2380 511.6 2.4e-142 gi|14250630|gb|AAH08778.1| XAB2 protein [Homo sapi ( 635) 2377 510.9 3e-142 gi|51491295|emb|CAH18708.1| hypothetical protein [ ( 706) 2377 510.9 3.3e-142 gi|25091548|sp|Q9HCS7.2|SYF1_HUMAN RecName: Full=P ( 855) 2377 511.0 3.8e-142 gi|10566459|dbj|BAB15807.1| XAB2 [Homo sapiens] ( 855) 2377 511.0 3.8e-142 gi|110665580|gb|ABG81436.1| XPA binding protein 2 ( 855) 2376 510.8 4.4e-142 gi|133777470|gb|AAI14737.1| XPA binding protein 2 ( 855) 2376 510.8 4.4e-142 gi|33339562|gb|AAQ14304.1|AF272147_1 crn-related p ( 852) 2371 509.7 9.1e-142 gi|9295341|gb|AAF86951.1|AF226051_1 HCNP [Homo sap ( 855) 2343 503.8 5.5e-140 gi|126323885|ref|XP_001377412.1| PREDICTED: simila ( 862) 2230 480.0 8.2e-133 gi|32451897|gb|AAH54579.1| XPA binding protein 2 [ ( 849) 2037 439.2 1.5e-120 gi|34783757|gb|AAH56771.1| Xab2 protein [Danio rer ( 851) 2030 437.8 4.1e-120 gi|94732244|emb|CAK05397.1| XPA binding protein 2 ( 851) 2030 437.8 4.1e-120 gi|223649058|gb|ACN11287.1| Pre-mRNA-splicing fact ( 851) 1946 420.1 8.8e-115 gi|197246298|gb|AAI68421.1| Unknown (protein for M ( 839) 1803 389.9 1e-105 gi|117558145|gb|AAI27433.1| LOC100036801 protein [ ( 838) 1801 389.5 1.4e-105 gi|210098139|gb|EEA46255.1| hypothetical protein B ( 510) 1789 386.8 5.5e-105 gi|210084389|gb|EEA32918.1| hypothetical protein B ( 856) 1789 386.9 8.2e-105 gi|194212558|ref|XP_001916974.1| PREDICTED: simila ( 765) 1643 356.1 1.4e-95 gi|215509303|gb|EEC18756.1| pre-mRNA splicing fact ( 850) 1587 344.3 5.5e-92 gi|212517889|gb|EEB19718.1| XPA-binding protein, p ( 858) 1582 343.3 1.2e-91 gi|53136500|emb|CAG32579.1| hypothetical protein [ ( 716) 1552 336.9 8e-90 gi|190588088|gb|EDV28130.1| hypothetical protein T ( 833) 1517 329.6 1.5e-87 gi|194176979|gb|EDW90590.1| GE12556 [Drosophila ya ( 882) 1504 326.8 1.1e-86 gi|194125708|gb|EDW47751.1| GM21482 [Drosophila se ( 443) 1492 324.1 3.6e-86 gi|190658925|gb|EDV56138.1| GG20394 [Drosophila er ( 882) 1495 324.9 3.9e-86 gi|7303287|gb|AAF58348.1| CG6197 [Drosophila melan ( 883) 1483 322.4 2.3e-85 gi|194113786|gb|EDW35829.1| GL17467 [Drosophila pe ( 848) 1482 322.2 2.6e-85 gi|54636792|gb|EAL26195.1| GA19432 [Drosophila pse ( 884) 1476 320.9 6.3e-85 gi|91092544|ref|XP_968085.1| PREDICTED: similar to ( 857) 1471 319.9 1.3e-84 gi|193901832|gb|EDW00699.1| GH21027 [Drosophila gr ( 891) 1469 319.4 1.8e-84 gi|194144321|gb|EDW60717.1| GJ21637 [Drosophila vi ( 884) 1464 318.4 3.7e-84 gi|198429938|ref|XP_002128002.1| PREDICTED: simila ( 327) 1448 314.7 1.7e-83 gi|190622408|gb|EDV37932.1| GF13706 [Drosophila an ( 882) 1453 316.1 1.8e-83 gi|194160091|gb|EDW74992.1| GK15972 [Drosophila wi ( 886) 1443 314.0 7.9e-83 gi|221130583|ref|XP_002165263.1| PREDICTED: simila ( 414) 1414 307.6 3e-81 gi|167863389|gb|EDS26772.1| XPA-binding protein 2 ( 862) 1410 307.0 9.7e-81 gi|119589428|gb|EAW69022.1| XPA binding protein 2, ( 743) 1391 302.9 1.4e-79 gi|156553931|ref|XP_001602137.1| PREDICTED: simila ( 841) 1382 301.1 5.7e-79 gi|158594635|gb|EDP33219.1| XPA-binding protein 2, ( 871) 1368 298.1 4.5e-78 >>gi|149015557|gb|EDL74938.1| XPA binding protein 2, iso (367 aa) initn: 2417 init1: 2417 opt: 2417 Z-score: 2759.1 bits: 519.1 E(): 5.6e-145 Smith-Waterman score: 2417; 100.000% identity (100.000% similar) in 366 aa overlap (1-366:2-367) 10 20 30 40 50 mKIAA1 LADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLF ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 MLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLF 10 20 30 40 50 60 60 70 80 90 100 110 mKIAA1 KWPNVSDIWSTYLTKFISRYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 KWPNVSDIWSTYLTKFISRYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGL 70 80 90 100 110 120 120 130 140 150 160 170 mKIAA1 ARHAMAVYDRATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLSDEHAREMC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 ARHAMAVYDRATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLSDEHAREMC 130 140 150 160 170 180 180 190 200 210 220 230 mKIAA1 LRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIREMLRIRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIREMLRIRR 190 200 210 220 230 240 240 250 260 270 280 290 mKIAA1 SVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLAAEAERDQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 SVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLAAEAERDQP 250 260 270 280 290 300 300 310 320 330 340 350 mKIAA1 PRAQSKIFFVRSDASREELAELAQQANPEEIQLGEDEDEDEMDLEPNEVRLEQQSVPAAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 PRAQSKIFFVRSDASREELAELAQQANPEEIQLGEDEDEDEMDLEPNEVRLEQQSVPAAV 310 320 330 340 350 360 360 mKIAA1 FGSLKED ::::::: gi|149 FGSLKED >>gi|149015558|gb|EDL74939.1| XPA binding protein 2, iso (750 aa) initn: 2417 init1: 2417 opt: 2417 Z-score: 2754.7 bits: 519.4 E(): 9.8e-145 Smith-Waterman score: 2417; 100.000% identity (100.000% similar) in 366 aa overlap (1-366:385-750) 10 20 30 mKIAA1 LADLEESLGTFQSTKAVYDRILDLRIATPQ :::::::::::::::::::::::::::::: gi|149 TALPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQ 360 370 380 390 400 410 40 50 60 70 80 90 mKIAA1 IVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFISRYGGRKLERARDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 IVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFISRYGGRKLERARDL 420 430 440 450 460 470 100 110 120 130 140 150 mKIAA1 FEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNIYIKRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 FEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNIYIKRA 480 490 500 510 520 530 160 170 180 190 200 210 mKIAA1 AEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 AEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRT 540 550 560 570 580 590 220 230 240 250 260 270 mKIAA1 TGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 TGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDL 600 610 620 630 640 650 280 290 300 310 320 330 mKIAA1 APGQSGMDDMKLLEQRAEQLAAEAERDQPPRAQSKIFFVRSDASREELAELAQQANPEEI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 APGQSGMDDMKLLEQRAEQLAAEAERDQPPRAQSKIFFVRSDASREELAELAQQANPEEI 660 670 680 690 700 710 340 350 360 mKIAA1 QLGEDEDEDEMDLEPNEVRLEQQSVPAAVFGSLKED :::::::::::::::::::::::::::::::::::: gi|149 QLGEDEDEDEMDLEPNEVRLEQQSVPAAVFGSLKED 720 730 740 750 >>gi|25091545|sp|Q9DCD2.1|SYF1_MOUSE RecName: Full=Pre-m (855 aa) initn: 2417 init1: 2417 opt: 2417 Z-score: 2753.9 bits: 519.4 E(): 1.1e-144 Smith-Waterman score: 2417; 100.000% identity (100.000% similar) in 366 aa overlap (1-366:490-855) 10 20 30 mKIAA1 LADLEESLGTFQSTKAVYDRILDLRIATPQ :::::::::::::::::::::::::::::: gi|250 TALPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQ 460 470 480 490 500 510 40 50 60 70 80 90 mKIAA1 IVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFISRYGGRKLERARDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|250 IVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFISRYGGRKLERARDL 520 530 540 550 560 570 100 110 120 130 140 150 mKIAA1 FEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNIYIKRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|250 FEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNIYIKRA 580 590 600 610 620 630 160 170 180 190 200 210 mKIAA1 AEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|250 AEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRT 640 650 660 670 680 690 220 230 240 250 260 270 mKIAA1 TGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|250 TGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDL 700 710 720 730 740 750 280 290 300 310 320 330 mKIAA1 APGQSGMDDMKLLEQRAEQLAAEAERDQPPRAQSKIFFVRSDASREELAELAQQANPEEI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|250 APGQSGMDDMKLLEQRAEQLAAEAERDQPPRAQSKIFFVRSDASREELAELAQQANPEEI 760 770 780 790 800 810 340 350 360 mKIAA1 QLGEDEDEDEMDLEPNEVRLEQQSVPAAVFGSLKED :::::::::::::::::::::::::::::::::::: gi|250 QLGEDEDEDEMDLEPNEVRLEQQSVPAAVFGSLKED 820 830 840 850 >>gi|25091510|sp|Q99PK0.1|SYF1_RAT RecName: Full=Pre-mRN (855 aa) initn: 2417 init1: 2417 opt: 2417 Z-score: 2753.9 bits: 519.4 E(): 1.1e-144 Smith-Waterman score: 2417; 100.000% identity (100.000% similar) in 366 aa overlap (1-366:490-855) 10 20 30 mKIAA1 LADLEESLGTFQSTKAVYDRILDLRIATPQ :::::::::::::::::::::::::::::: gi|250 TALPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQ 460 470 480 490 500 510 40 50 60 70 80 90 mKIAA1 IVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFISRYGGRKLERARDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|250 IVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFISRYGGRKLERARDL 520 530 540 550 560 570 100 110 120 130 140 150 mKIAA1 FEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNIYIKRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|250 FEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNIYIKRA 580 590 600 610 620 630 160 170 180 190 200 210 mKIAA1 AEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|250 AEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRT 640 650 660 670 680 690 220 230 240 250 260 270 mKIAA1 TGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|250 TGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDL 700 710 720 730 740 750 280 290 300 310 320 330 mKIAA1 APGQSGMDDMKLLEQRAEQLAAEAERDQPPRAQSKIFFVRSDASREELAELAQQANPEEI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|250 APGQSGMDDMKLLEQRAEQLAAEAERDQPPRAQSKIFFVRSDASREELAELAQQANPEEI 760 770 780 790 800 810 340 350 360 mKIAA1 QLGEDEDEDEMDLEPNEVRLEQQSVPAAVFGSLKED :::::::::::::::::::::::::::::::::::: gi|250 QLGEDEDEDEMDLEPNEVRLEQQSVPAAVFGSLKED 820 830 840 850 >>gi|18204681|gb|AAH21341.1| XPA binding protein 2 [Mus (855 aa) initn: 2412 init1: 2412 opt: 2412 Z-score: 2748.2 bits: 518.4 E(): 2.3e-144 Smith-Waterman score: 2412; 99.727% identity (100.000% similar) in 366 aa overlap (1-366:490-855) 10 20 30 mKIAA1 LADLEESLGTFQSTKAVYDRILDLRIATPQ :::::::::::::::::::::::::::::: gi|182 TALPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQ 460 470 480 490 500 510 40 50 60 70 80 90 mKIAA1 IVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFISRYGGRKLERARDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|182 IVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFISRYGGRKLERARDL 520 530 540 550 560 570 100 110 120 130 140 150 mKIAA1 FEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNIYIKRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|182 FEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNIYIKRA 580 590 600 610 620 630 160 170 180 190 200 210 mKIAA1 AEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRT ::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::: gi|182 AEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRTRAIYSFCSQICDPRT 640 650 660 670 680 690 220 230 240 250 260 270 mKIAA1 TGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|182 TGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDL 700 710 720 730 740 750 280 290 300 310 320 330 mKIAA1 APGQSGMDDMKLLEQRAEQLAAEAERDQPPRAQSKIFFVRSDASREELAELAQQANPEEI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|182 APGQSGMDDMKLLEQRAEQLAAEAERDQPPRAQSKIFFVRSDASREELAELAQQANPEEI 760 770 780 790 800 810 340 350 360 mKIAA1 QLGEDEDEDEMDLEPNEVRLEQQSVPAAVFGSLKED :::::::::::::::::::::::::::::::::::: gi|182 QLGEDEDEDEMDLEPNEVRLEQQSVPAAVFGSLKED 820 830 840 850 >>gi|74219245|dbj|BAE26756.1| unnamed protein product [M (855 aa) initn: 2397 init1: 2397 opt: 2397 Z-score: 2731.1 bits: 515.2 E(): 2e-143 Smith-Waterman score: 2397; 99.727% identity (99.727% similar) in 366 aa overlap (1-366:490-855) 10 20 30 mKIAA1 LADLEESLGTFQSTKAVYDRILDLRIATPQ :::::::::::::::::::::::::::::: gi|742 TALPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQ 460 470 480 490 500 510 40 50 60 70 80 90 mKIAA1 IVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFISRYGGRKLERARDL ::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::: gi|742 IVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDICSTYLTKFISRYGGRKLERARDL 520 530 540 550 560 570 100 110 120 130 140 150 mKIAA1 FEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNIYIKRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 FEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNIYIKRA 580 590 600 610 620 630 160 170 180 190 200 210 mKIAA1 AEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 AEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRT 640 650 660 670 680 690 220 230 240 250 260 270 mKIAA1 TGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 TGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDL 700 710 720 730 740 750 280 290 300 310 320 330 mKIAA1 APGQSGMDDMKLLEQRAEQLAAEAERDQPPRAQSKIFFVRSDASREELAELAQQANPEEI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 APGQSGMDDMKLLEQRAEQLAAEAERDQPPRAQSKIFFVRSDASREELAELAQQANPEEI 760 770 780 790 800 810 340 350 360 mKIAA1 QLGEDEDEDEMDLEPNEVRLEQQSVPAAVFGSLKED :::::::::::::::::::::::::::::::::::: gi|742 QLGEDEDEDEMDLEPNEVRLEQQSVPAAVFGSLKED 820 830 840 850 >>gi|73986880|ref|XP_868264.1| PREDICTED: similar to XPA (832 aa) initn: 2381 init1: 2381 opt: 2381 Z-score: 2713.1 bits: 511.8 E(): 2.1e-142 Smith-Waterman score: 2381; 98.361% identity (99.727% similar) in 366 aa overlap (1-366:467-832) 10 20 30 mKIAA1 LADLEESLGTFQSTKAVYDRILDLRIATPQ :::::::::::::::::::::::::::::: gi|739 TALPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQ 440 450 460 470 480 490 40 50 60 70 80 90 mKIAA1 IVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFISRYGGRKLERARDL ::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::: gi|739 IVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDL 500 510 520 530 540 550 100 110 120 130 140 150 mKIAA1 FEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNIYIKRA :::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::: gi|739 FEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRA 560 570 580 590 600 610 160 170 180 190 200 210 mKIAA1 AEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRT :::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::: gi|739 AEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECRLGEIDRARAIYSFCSQICDPRT 620 630 640 650 660 670 220 230 240 250 260 270 mKIAA1 TGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 TGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDL 680 690 700 710 720 730 280 290 300 310 320 330 mKIAA1 APGQSGMDDMKLLEQRAEQLAAEAERDQPPRAQSKIFFVRSDASREELAELAQQANPEEI ::::::::::::::::::::::::::::: ::::::.::::::::::::::::::::::: gi|739 APGQSGMDDMKLLEQRAEQLAAEAERDQPSRAQSKILFVRSDASREELAELAQQANPEEI 740 750 760 770 780 790 340 350 360 mKIAA1 QLGEDEDEDEMDLEPNEVRLEQQSVPAAVFGSLKED .::::::::::::::::::::::::::::::::::: gi|739 ELGEDEDEDEMDLEPNEVRLEQQSVPAAVFGSLKED 800 810 820 830 >>gi|73986874|ref|XP_542113.2| PREDICTED: similar to XPA (852 aa) initn: 2381 init1: 2381 opt: 2381 Z-score: 2712.9 bits: 511.8 E(): 2.1e-142 Smith-Waterman score: 2381; 98.361% identity (99.727% similar) in 366 aa overlap (1-366:487-852) 10 20 30 mKIAA1 LADLEESLGTFQSTKAVYDRILDLRIATPQ :::::::::::::::::::::::::::::: gi|739 TALPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQ 460 470 480 490 500 510 40 50 60 70 80 90 mKIAA1 IVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFISRYGGRKLERARDL ::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::: gi|739 IVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDL 520 530 540 550 560 570 100 110 120 130 140 150 mKIAA1 FEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNIYIKRA :::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::: gi|739 FEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRA 580 590 600 610 620 630 160 170 180 190 200 210 mKIAA1 AEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRT :::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::: gi|739 AEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECRLGEIDRARAIYSFCSQICDPRT 640 650 660 670 680 690 220 230 240 250 260 270 mKIAA1 TGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 TGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDL 700 710 720 730 740 750 280 290 300 310 320 330 mKIAA1 APGQSGMDDMKLLEQRAEQLAAEAERDQPPRAQSKIFFVRSDASREELAELAQQANPEEI ::::::::::::::::::::::::::::: ::::::.::::::::::::::::::::::: gi|739 APGQSGMDDMKLLEQRAEQLAAEAERDQPSRAQSKILFVRSDASREELAELAQQANPEEI 760 770 780 790 800 810 340 350 360 mKIAA1 QLGEDEDEDEMDLEPNEVRLEQQSVPAAVFGSLKED .::::::::::::::::::::::::::::::::::: gi|739 ELGEDEDEDEMDLEPNEVRLEQQSVPAAVFGSLKED 820 830 840 850 >>gi|73986876|ref|XP_868258.1| PREDICTED: similar to XPA (854 aa) initn: 2381 init1: 2381 opt: 2381 Z-score: 2712.9 bits: 511.8 E(): 2.1e-142 Smith-Waterman score: 2381; 98.361% identity (99.727% similar) in 366 aa overlap (1-366:489-854) 10 20 30 mKIAA1 LADLEESLGTFQSTKAVYDRILDLRIATPQ :::::::::::::::::::::::::::::: gi|739 RVWGRVGVYYFDGSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQ 460 470 480 490 500 510 40 50 60 70 80 90 mKIAA1 IVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFISRYGGRKLERARDL ::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::: gi|739 IVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDL 520 530 540 550 560 570 100 110 120 130 140 150 mKIAA1 FEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNIYIKRA :::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::: gi|739 FEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRA 580 590 600 610 620 630 160 170 180 190 200 210 mKIAA1 AEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRT :::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::: gi|739 AEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECRLGEIDRARAIYSFCSQICDPRT 640 650 660 670 680 690 220 230 240 250 260 270 mKIAA1 TGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 TGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDL 700 710 720 730 740 750 280 290 300 310 320 330 mKIAA1 APGQSGMDDMKLLEQRAEQLAAEAERDQPPRAQSKIFFVRSDASREELAELAQQANPEEI ::::::::::::::::::::::::::::: ::::::.::::::::::::::::::::::: gi|739 APGQSGMDDMKLLEQRAEQLAAEAERDQPSRAQSKILFVRSDASREELAELAQQANPEEI 760 770 780 790 800 810 340 350 360 mKIAA1 QLGEDEDEDEMDLEPNEVRLEQQSVPAAVFGSLKED .::::::::::::::::::::::::::::::::::: gi|739 ELGEDEDEDEMDLEPNEVRLEQQSVPAAVFGSLKED 820 830 840 850 >>gi|73986878|ref|XP_854173.1| PREDICTED: similar to XPA (867 aa) initn: 2381 init1: 2381 opt: 2381 Z-score: 2712.8 bits: 511.8 E(): 2.1e-142 Smith-Waterman score: 2381; 98.361% identity (99.727% similar) in 366 aa overlap (1-366:502-867) 10 20 30 mKIAA1 LADLEESLGTFQSTKAVYDRILDLRIATPQ :::::::::::::::::::::::::::::: gi|739 TALPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQ 480 490 500 510 520 530 40 50 60 70 80 90 mKIAA1 IVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFISRYGGRKLERARDL ::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::: gi|739 IVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDL 540 550 560 570 580 590 100 110 120 130 140 150 mKIAA1 FEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNIYIKRA :::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::: gi|739 FEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRA 600 610 620 630 640 650 160 170 180 190 200 210 mKIAA1 AEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRT :::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::: gi|739 AEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECRLGEIDRARAIYSFCSQICDPRT 660 670 680 690 700 710 220 230 240 250 260 270 mKIAA1 TGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 TGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDL 720 730 740 750 760 770 280 290 300 310 320 330 mKIAA1 APGQSGMDDMKLLEQRAEQLAAEAERDQPPRAQSKIFFVRSDASREELAELAQQANPEEI ::::::::::::::::::::::::::::: ::::::.::::::::::::::::::::::: gi|739 APGQSGMDDMKLLEQRAEQLAAEAERDQPSRAQSKILFVRSDASREELAELAQQANPEEI 780 790 800 810 820 830 340 350 360 mKIAA1 QLGEDEDEDEMDLEPNEVRLEQQSVPAAVFGSLKED .::::::::::::::::::::::::::::::::::: gi|739 ELGEDEDEDEMDLEPNEVRLEQQSVPAAVFGSLKED 840 850 860 366 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Fri Mar 13 02:01:57 2009 done: Fri Mar 13 02:08:07 2009 Total Scan time: 845.500 Total Display time: 0.110 Function used was FASTA [version 34.26.5 April 26, 2007]